Wall clock time and date at job start Wed Apr 1 2020 04:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38723 * 120.05884 * 359.72201 * 3 2 1 5 5 C 1.38145 * 119.94323 * 179.77076 * 4 3 2 6 6 C 1.38260 * 120.05692 * 0.50972 * 5 4 3 7 7 C 1.50706 * 119.94706 * 179.76915 * 6 5 4 8 8 N 1.46504 * 109.46991 * 269.97688 * 7 6 5 9 9 N 1.40063 * 126.04496 * 90.02312 * 8 7 6 10 10 C 1.30849 * 108.37002 * 179.97438 * 9 8 7 11 11 C 1.39758 * 108.32709 * 0.02562 * 10 9 8 12 12 C 1.35258 * 126.04073 * 269.71166 * 8 7 6 13 13 N 1.39465 * 126.22262 * 0.02562 * 12 8 7 14 14 C 1.34781 * 120.00483 * 180.02562 * 13 12 8 15 15 O 1.21290 * 119.99470 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00162 * 179.97438 * 14 13 12 17 17 S 1.80997 * 109.46802 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00104 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99301 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00410 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99805 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00261 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47246 * 89.99531 * 22 20 18 24 24 H 1.48497 * 109.47258 * 210.00073 * 22 20 18 25 25 H 1.48508 * 109.46915 * 329.99907 * 22 20 18 26 26 C 1.38268 * 120.10972 * 359.74026 * 6 5 4 27 27 C 1.38139 * 120.05510 * 0.02562 * 26 6 5 28 28 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 30 30 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 31 31 H 1.08001 * 120.02769 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.97076 * 180.25587 * 5 4 3 33 33 H 1.09001 * 109.46891 * 29.97509 * 7 6 5 34 34 H 1.08994 * 109.47121 * 149.97471 * 7 6 5 35 35 H 1.08004 * 125.83792 * 180.02562 * 10 9 8 36 36 H 1.07998 * 126.08932 * 180.02562 * 11 10 9 37 37 H 0.97004 * 120.00070 * 359.97438 * 13 12 8 38 38 H 1.08995 * 109.47324 * 299.99680 * 16 14 13 39 39 H 1.08998 * 109.47304 * 60.00008 * 16 14 13 40 40 H 0.96994 * 120.00013 * 179.97438 * 21 20 18 41 41 H 1.08008 * 119.97007 * 179.97438 * 26 6 5 42 42 H 1.08001 * 120.02451 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2915 2.3751 -0.0058 5 6 1.9210 3.6048 -0.0010 6 6 3.3018 3.6758 -0.0011 7 6 3.9860 5.0186 -0.0011 8 7 4.2082 5.4535 -1.3824 9 7 3.3243 6.2126 -2.1597 10 6 3.8675 6.4027 -3.3348 11 6 5.1147 5.7723 -3.3496 12 6 5.3057 5.1978 -2.1304 13 7 6.4275 4.4738 -1.7273 14 6 7.4561 4.2947 -2.5796 15 8 7.4059 4.7628 -3.6974 16 6 8.6684 3.5129 -2.1437 17 16 9.8646 3.4485 -3.5005 18 6 11.1424 2.5053 -2.7375 19 1 11.0257 2.1614 -1.7204 20 6 12.2989 2.2043 -3.4435 21 7 12.4409 2.6230 -4.6833 22 14 13.6532 1.2037 -2.6348 23 1 13.4198 -0.2409 -2.8878 24 1 14.9672 1.5996 -3.2021 25 1 13.6492 1.4569 -1.1715 26 6 4.0560 2.5170 -0.0005 27 6 3.4313 1.2849 -0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2129 2.3201 -0.0099 32 1 1.3341 4.5114 -0.0014 33 1 3.3578 5.7465 0.5124 34 1 4.9437 4.9384 0.5131 35 1 3.4272 6.9526 -4.1535 36 1 5.8063 5.7495 -4.1788 37 1 6.4677 4.0998 -0.8332 38 1 9.1233 3.9989 -1.2807 39 1 8.3700 2.4997 -1.8746 40 1 13.2492 2.4130 -5.1766 41 1 5.1345 2.5751 -0.0009 42 1 4.0209 0.3801 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603621628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:57 Heat of formation + Delta-G solvation = 20.990419 kcal Electronic energy + Delta-G solvation = -26665.757824 eV Core-core repulsion = 22738.907939 eV Total energy + Delta-G solvation = -3926.849885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.57116 -41.13744 -40.50537 -38.72541 -36.07648 -34.63079 -34.56119 -32.17223 -31.74156 -31.04614 -29.27392 -28.50660 -27.63579 -26.65517 -23.90869 -23.31412 -22.84009 -21.74357 -21.02505 -19.89071 -19.28262 -18.92369 -17.78527 -17.33483 -17.19413 -16.86133 -16.71450 -16.60010 -16.37724 -15.92386 -15.61591 -15.25321 -15.05894 -14.79513 -14.73195 -14.53744 -14.47510 -14.06188 -13.78694 -13.58701 -13.17176 -13.11981 -12.94686 -12.88411 -12.72020 -12.62696 -12.09829 -12.05206 -11.82564 -11.80213 -11.65042 -11.12699 -10.99996 -10.27748 -10.06328 -9.99790 -9.25835 -9.14012 -8.65132 -8.33378 -6.11029 0.13657 0.29866 0.66308 0.99687 1.37432 1.44276 1.52956 1.55704 1.62915 2.01138 2.14365 2.27436 2.30809 2.75273 3.01625 3.24104 3.49738 3.65070 3.68607 3.79682 3.87331 4.14420 4.20870 4.26209 4.31087 4.34187 4.40786 4.43395 4.47230 4.54980 4.60795 4.65243 4.69433 4.92440 4.98458 5.13255 5.15398 5.27708 5.44699 5.46838 5.68126 5.76455 5.92162 6.21305 6.22525 6.35319 6.75200 6.96751 7.08773 8.75579 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.002533 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.903059 B =11050.035826 C =12939.194343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.123 3.877 4 C -0.214 4.214 5 C -0.054 4.054 6 C -0.161 4.161 7 C 0.170 3.830 8 N -0.376 5.376 9 N -0.304 5.304 10 C 0.061 3.939 11 C -0.313 4.313 12 C 0.310 3.690 13 N -0.632 5.632 14 C 0.543 3.457 15 O -0.519 6.519 16 C -0.125 4.125 17 S -0.142 6.142 18 C -0.544 4.544 19 H 0.087 0.913 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.996 3.004 23 H -0.269 1.269 24 H -0.281 1.281 25 H -0.256 1.256 26 C -0.066 4.066 27 C -0.171 4.171 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.210 0.790 36 H 0.148 0.852 37 H 0.425 0.575 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.271 0.729 41 H 0.141 0.859 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.693 -0.116 15.793 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.078 3.922 4 C -0.232 4.232 5 C -0.072 4.072 6 C -0.163 4.163 7 C 0.051 3.949 8 N -0.164 5.164 9 N -0.126 5.126 10 C -0.125 4.125 11 C -0.345 4.345 12 C 0.089 3.911 13 N -0.283 5.283 14 C 0.329 3.671 15 O -0.392 6.392 16 C -0.276 4.276 17 S 0.085 5.915 18 C -0.692 4.692 19 H 0.105 0.895 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.818 3.182 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.180 1.180 26 C -0.085 4.085 27 C -0.189 4.189 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.227 0.773 36 H 0.166 0.834 37 H 0.264 0.736 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.080 0.920 41 H 0.159 0.841 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.567 0.634 14.676 29.487 hybrid contribution 1.467 -1.354 1.021 2.242 sum -24.100 -0.720 15.697 28.771 Atomic orbital electron populations 1.23355 0.76332 1.05639 1.02306 1.86068 1.23620 1.26962 1.88392 1.19325 0.92725 0.84838 0.95356 1.21469 1.01224 0.91795 1.08748 1.21070 0.93850 0.97849 0.94470 1.19992 0.94463 0.94624 1.07203 1.20784 1.03495 0.93460 0.77192 1.48890 1.11375 1.43394 1.12696 1.77331 1.14803 1.15629 1.04853 1.24119 0.93391 0.98749 0.96207 1.21693 1.02012 1.12109 0.98678 1.18039 0.84306 0.96376 0.92338 1.42694 1.14245 1.53081 1.18242 1.20265 0.83004 0.79491 0.84319 1.90679 1.79351 1.47915 1.21273 1.23327 0.95669 1.03822 1.04821 1.85665 1.15244 1.71811 1.18734 1.23206 1.04137 1.39194 1.02672 0.89501 1.26094 1.00684 0.96982 0.95364 1.70171 1.28533 1.45006 1.11040 0.84979 0.76370 0.78012 0.78797 1.19479 1.20592 1.18020 1.21046 1.00468 0.90952 0.95988 1.20638 0.91955 0.99271 1.07049 0.86390 0.91255 0.92007 0.83357 0.84153 0.85863 0.86244 0.77326 0.83424 0.73599 0.86003 0.86126 0.92042 0.84127 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.23 10.50 -92.48 -0.97 -7.20 16 3 C 0.12 2.37 6.69 22.50 0.15 2.52 16 4 C -0.21 -3.45 9.04 22.36 0.20 -3.25 16 5 C -0.05 -0.87 9.69 22.25 0.22 -0.65 16 6 C -0.16 -2.66 5.46 -19.85 -0.11 -2.77 16 7 C 0.17 2.51 6.38 85.63 0.55 3.06 16 8 N -0.38 -8.64 3.60 -348.70 -1.26 -9.89 16 9 N -0.30 -7.81 12.56 -57.09 -0.72 -8.53 16 10 C 0.06 1.59 12.01 85.21 1.02 2.61 16 11 C -0.31 -9.92 9.65 22.14 0.21 -9.70 16 12 C 0.31 8.62 7.66 131.32 1.01 9.63 16 13 N -0.63 -15.87 5.41 -308.56 -1.67 -17.54 16 14 C 0.54 18.63 7.81 87.66 0.68 19.32 16 15 O -0.52 -22.49 12.99 -3.06 -0.04 -22.53 16 16 C -0.13 -4.45 6.16 71.24 0.44 -4.01 16 17 S -0.14 -7.43 20.57 -56.49 -1.16 -8.59 16 18 C -0.54 -29.61 9.50 67.95 0.65 -28.97 16 19 H 0.09 4.32 7.80 -2.91 -0.02 4.30 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -54.68 13.22 21.65 0.29 -54.39 16 22 Si 1.00 42.32 29.55 68.60 2.03 44.35 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 26 C -0.07 -1.12 9.69 22.25 0.22 -0.91 16 27 C -0.17 -3.30 9.99 22.36 0.22 -3.07 16 28 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.48 7.67 -2.39 -0.02 0.47 16 30 H 0.06 0.53 7.65 -2.39 -0.02 0.52 16 31 H 0.15 1.69 6.30 -2.91 -0.02 1.67 16 32 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.12 1.43 8.08 -2.39 -0.02 1.41 16 34 H 0.12 1.13 7.43 -2.39 -0.02 1.12 16 35 H 0.21 3.95 8.06 -2.91 -0.02 3.92 16 36 H 0.15 5.51 5.83 -2.91 -0.02 5.49 16 37 H 0.42 6.97 7.16 -92.71 -0.66 6.31 16 38 H 0.12 3.73 8.14 -2.40 -0.02 3.71 16 39 H 0.12 3.72 8.14 -2.40 -0.02 3.70 16 40 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.14 1.81 7.27 -2.91 -0.02 1.79 16 42 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -79.01 376.89 3.94 -75.07 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.40 Total: 22.93 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 7.04 Total: -13.69 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -3.36 Total: -90.35 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -1.01 Total: -29.72 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: -7.43 SS G_CDS: -1.16 Total: -8.59 kcal Total: -79.01 3.94 -75.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603621628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.065 kcal (2) G-P(sol) polarization free energy of solvation -79.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds