Wall clock time and date at job start Wed Apr 1 2020 04:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00157 * 2 1 4 4 C 1.53001 * 109.47271 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46870 * 65.00493 * 4 3 2 6 6 C 1.46501 * 119.99949 * 262.49307 * 5 4 3 7 7 C 1.50707 * 109.46912 * 265.01175 * 6 5 4 8 8 H 1.07999 * 120.00035 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99867 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99809 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99773 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46645 * 90.00062 * 11 9 7 13 13 H 1.48497 * 109.47048 * 209.99783 * 11 9 7 14 14 H 1.48498 * 109.47208 * 330.00484 * 11 9 7 15 15 C 1.34776 * 120.00270 * 82.48957 * 5 4 3 16 16 O 1.21688 * 119.99901 * 182.39844 * 15 5 4 17 17 C 1.46695 * 120.00013 * 2.40110 * 15 5 4 18 18 C 1.36916 * 126.13270 * 172.40752 * 17 15 5 19 19 N 1.30583 * 114.03667 * 179.97438 * 18 17 15 20 20 C 1.30302 * 117.32032 * 0.02562 * 19 18 17 21 21 C 1.47875 * 124.74625 * 180.02562 * 20 19 18 22 22 C 1.39488 * 119.74386 * 359.67138 * 21 20 19 23 23 C 1.38423 * 119.05548 * 179.73817 * 22 21 20 24 24 C 1.38768 * 118.51102 * 0.52240 * 23 22 21 25 25 C 1.38373 * 119.39286 * 359.74043 * 24 23 22 26 26 N 1.31655 * 120.91417 * 359.97438 * 25 24 23 27 27 S 1.70925 * 110.50519 * 359.97438 * 20 19 18 28 28 H 1.08991 * 109.47173 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46981 * 299.99804 * 1 2 3 30 30 H 1.09000 * 109.47217 * 59.99083 * 1 2 3 31 31 H 1.09007 * 109.46926 * 60.00299 * 3 2 1 32 32 H 1.08997 * 109.47765 * 300.00679 * 3 2 1 33 33 H 1.08998 * 109.47448 * 305.00469 * 4 3 2 34 34 H 1.08999 * 109.47421 * 185.00008 * 4 3 2 35 35 H 1.09003 * 109.47155 * 25.00618 * 6 5 4 36 36 H 1.08999 * 109.47131 * 145.01190 * 6 5 4 37 37 H 0.97005 * 119.99506 * 180.02562 * 10 9 7 38 38 H 1.08004 * 122.97834 * 359.97438 * 18 17 15 39 39 H 1.07998 * 120.47615 * 359.97438 * 22 21 20 40 40 H 1.07999 * 120.74698 * 180.26032 * 23 22 21 41 41 H 1.08000 * 120.30226 * 179.70964 * 24 23 22 42 42 H 1.08001 * 119.54146 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2646 -0.8717 -1.2949 7 6 5.7400 -1.0948 -1.0834 8 1 6.3974 -0.2515 -0.9319 9 6 6.2505 -2.3757 -1.0834 10 7 5.4500 -3.4025 -1.2685 11 14 8.0793 -2.6521 -0.8220 12 1 8.3537 -2.8091 0.6290 13 1 8.5020 -3.8805 -1.5415 14 1 8.8360 -1.4865 -1.3455 15 6 4.1175 1.3139 -2.3619 16 8 4.4417 0.7910 -3.4118 17 6 3.8801 2.7604 -2.3055 18 6 4.1250 3.6585 -3.3096 19 7 3.8249 4.8922 -3.0045 20 6 3.3427 5.1137 -1.8144 21 6 2.9483 6.4422 -1.2987 22 6 3.0916 7.5692 -2.1080 23 6 2.7129 8.8051 -1.6128 24 6 2.2132 8.8759 -0.3201 25 6 2.1032 7.7182 0.4298 26 7 2.4652 6.5538 -0.0666 27 16 3.2284 3.6534 -0.9335 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8508 0.5684 0.8426 34 1 3.9785 2.1765 0.0902 35 1 3.7042 -1.3789 -0.5095 36 1 3.9722 -1.2714 -2.2659 37 1 5.8091 -4.3036 -1.2681 38 1 4.5303 3.3719 -4.2688 39 1 3.4889 7.4784 -3.1082 40 1 2.8081 9.6950 -2.2173 41 1 1.9134 9.8259 0.0969 42 1 1.7151 7.7706 1.4363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609137037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:08 Heat of formation + Delta-G solvation = 18.926192 kcal Electronic energy + Delta-G solvation = -27520.532362 eV Core-core repulsion = 23593.592965 eV Total energy + Delta-G solvation = -3926.939397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54471 -39.68064 -38.82818 -37.51174 -35.00981 -33.09773 -32.79394 -32.39289 -30.08883 -29.53504 -27.35253 -26.29236 -25.84491 -24.03471 -23.40745 -22.90647 -22.81147 -20.47792 -19.30561 -18.03464 -17.19614 -16.79439 -16.46868 -16.40244 -16.06970 -15.75277 -15.51746 -15.21480 -15.08119 -14.73807 -14.60344 -14.05758 -13.92503 -13.91254 -13.52921 -13.42488 -13.22966 -12.35913 -12.27743 -12.20412 -12.00486 -11.85200 -11.35855 -11.29898 -11.02281 -10.87965 -10.52959 -10.35112 -10.16101 -10.08060 -9.94402 -9.69112 -9.66116 -9.46697 -9.22833 -9.06454 -8.50553 -8.39311 -7.75840 -6.00721 -4.05409 -0.15111 0.89160 1.06917 1.23294 1.71596 2.64333 3.33010 3.38449 3.39579 3.43835 3.53486 3.66664 3.77086 3.90844 4.40619 4.47697 4.48138 4.62577 4.70334 4.83496 4.93188 5.12821 5.14010 5.28597 5.32754 5.34333 5.38892 5.43581 5.43902 5.48881 5.53286 5.69546 5.80089 5.80456 6.02776 6.16289 6.26312 7.05516 7.29473 7.43274 7.47203 7.53115 7.64203 7.95377 8.22169 8.28917 8.80317 9.00425 9.58787 11.07343 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003056 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.306984 B = 9161.316519 C =10096.874288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.037 3.963 4 C 0.101 3.899 5 N -0.578 5.578 6 C 0.254 3.746 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.579 3.421 16 O -0.518 6.518 17 C -0.282 4.282 18 C 0.108 3.892 19 N -0.465 5.465 20 C 0.023 3.977 21 C 0.191 3.809 22 C -0.124 4.124 23 C -0.077 4.077 24 C -0.166 4.166 25 C 0.106 3.894 26 N -0.475 5.475 27 S 0.270 5.730 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.191 0.809 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 23.244 5.079 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.041 4.041 4 C -0.026 4.026 5 N -0.309 5.309 6 C 0.136 3.864 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.364 3.636 16 O -0.395 6.395 17 C -0.408 4.408 18 C -0.052 4.052 19 N -0.181 5.181 20 C -0.246 4.246 21 C 0.054 3.946 22 C -0.147 4.147 23 C -0.103 4.103 24 C -0.187 4.187 25 C -0.053 4.053 26 N -0.185 5.185 27 S 0.530 5.470 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.208 0.792 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.964 22.002 5.708 25.236 hybrid contribution 1.247 0.749 -1.169 1.867 sum -9.716 22.751 4.539 25.152 Atomic orbital electron populations 1.22729 0.81632 1.02769 0.99400 1.88069 1.19056 1.26453 1.95191 1.23302 0.94612 0.85776 1.00444 1.21854 0.91884 0.98194 0.90648 1.48116 1.63742 1.12046 1.06969 1.19388 0.95989 0.71756 0.99303 1.21446 0.93103 0.92488 1.49764 0.92486 1.24904 0.98089 0.95824 0.95115 1.69941 1.34940 0.98673 1.49540 0.86510 0.85188 0.77770 0.78035 1.20646 1.21091 1.19897 1.16716 0.79023 0.82939 0.84954 1.90823 1.47609 1.71878 1.29233 1.26938 1.13594 1.00960 0.99273 1.22290 0.97804 0.84853 1.00224 1.66268 1.13611 1.22280 1.15949 1.25338 1.04430 0.99674 0.95198 1.18491 0.96281 0.89803 0.90063 1.22179 0.98949 0.91890 1.01698 1.21630 0.95346 0.97842 0.95492 1.22295 1.00708 1.00358 0.95372 1.22703 0.95631 0.86931 0.99986 1.67460 1.10359 1.28626 1.12074 1.84587 1.53844 0.95016 1.13554 0.89552 0.94375 0.94469 0.91900 0.93231 0.86970 0.90262 0.93524 0.93881 0.92725 0.79224 0.83485 0.84243 0.84367 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.19 10.60 -35.23 -0.37 -6.56 16 3 C 0.04 0.54 4.84 37.16 0.18 0.72 16 4 C 0.10 1.69 5.32 -4.04 -0.02 1.67 16 5 N -0.58 -12.61 2.44 -176.59 -0.43 -13.04 16 6 C 0.25 6.72 5.10 -5.19 -0.03 6.70 16 7 C -0.53 -15.12 9.35 -34.44 -0.32 -15.44 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 11 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.58 12.69 7.52 -12.85 -0.10 12.59 16 16 O -0.52 -13.33 16.53 5.20 0.09 -13.24 16 17 C -0.28 -4.93 6.12 -36.65 -0.22 -5.16 16 18 C 0.11 1.74 11.16 -18.56 -0.21 1.54 16 19 N -0.47 -7.04 10.01 -11.99 -0.12 -7.16 16 20 C 0.02 0.32 7.16 -14.26 -0.10 0.22 16 21 C 0.19 2.34 6.75 -83.04 -0.56 1.78 16 22 C -0.12 -1.24 9.71 -39.05 -0.38 -1.62 16 23 C -0.08 -0.55 10.17 -39.32 -0.40 -0.95 16 24 C -0.17 -1.04 10.11 -39.34 -0.40 -1.44 16 25 C 0.11 0.83 11.18 -17.58 -0.20 0.64 16 26 N -0.47 -5.32 10.01 -9.84 -0.10 -5.42 16 27 S 0.27 3.74 15.41 -107.50 -1.66 2.08 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.72 6.30 -51.37 -0.32 0.40 16 33 H 0.11 1.89 8.01 -51.93 -0.42 1.47 16 34 H 0.08 1.19 4.45 -22.54 -0.10 1.09 16 35 H 0.05 1.26 7.98 -51.93 -0.41 0.85 16 36 H 0.04 1.29 7.54 -51.93 -0.39 0.89 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.19 2.89 8.06 -52.48 -0.42 2.46 16 39 H 0.15 1.43 7.78 -52.49 -0.41 1.02 16 40 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 42 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -35.48 373.07 -7.97 -43.45 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.98 Total: -1.31 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.74 Total: 4.47 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.09 Total: -51.55 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.29 Total: -19.81 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.66 Total: 2.08 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.48 -7.97 -43.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609137037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.379 kcal (2) G-P(sol) polarization free energy of solvation -35.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds