Wall clock time and date at job start Wed Apr 1 2020 04:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00157 * 2 1 4 4 C 1.53001 * 109.47271 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46870 * 65.00493 * 4 3 2 6 6 C 1.46501 * 119.99949 * 262.49307 * 5 4 3 7 7 C 1.50707 * 109.46912 * 265.01175 * 6 5 4 8 8 H 1.07999 * 120.00035 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99867 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99809 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99773 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46645 * 90.00062 * 11 9 7 13 13 H 1.48497 * 109.47048 * 209.99783 * 11 9 7 14 14 H 1.48498 * 109.47208 * 330.00484 * 11 9 7 15 15 C 1.34776 * 120.00270 * 82.48957 * 5 4 3 16 16 O 1.21688 * 119.99901 * 182.39844 * 15 5 4 17 17 C 1.46695 * 120.00013 * 2.40110 * 15 5 4 18 18 C 1.36916 * 126.13270 * 172.40752 * 17 15 5 19 19 N 1.30583 * 114.03667 * 179.97438 * 18 17 15 20 20 C 1.30302 * 117.32032 * 0.02562 * 19 18 17 21 21 C 1.47875 * 124.74625 * 180.02562 * 20 19 18 22 22 C 1.39488 * 119.74386 * 359.67138 * 21 20 19 23 23 C 1.38423 * 119.05548 * 179.73817 * 22 21 20 24 24 C 1.38768 * 118.51102 * 0.52240 * 23 22 21 25 25 C 1.38373 * 119.39286 * 359.74043 * 24 23 22 26 26 N 1.31655 * 120.91417 * 359.97438 * 25 24 23 27 27 S 1.70925 * 110.50519 * 359.97438 * 20 19 18 28 28 H 1.08991 * 109.47173 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46981 * 299.99804 * 1 2 3 30 30 H 1.09000 * 109.47217 * 59.99083 * 1 2 3 31 31 H 1.09007 * 109.46926 * 60.00299 * 3 2 1 32 32 H 1.08997 * 109.47765 * 300.00679 * 3 2 1 33 33 H 1.08998 * 109.47448 * 305.00469 * 4 3 2 34 34 H 1.08999 * 109.47421 * 185.00008 * 4 3 2 35 35 H 1.09003 * 109.47155 * 25.00618 * 6 5 4 36 36 H 1.08999 * 109.47131 * 145.01190 * 6 5 4 37 37 H 0.97005 * 119.99506 * 180.02562 * 10 9 7 38 38 H 1.08004 * 122.97834 * 359.97438 * 18 17 15 39 39 H 1.07998 * 120.47615 * 359.97438 * 22 21 20 40 40 H 1.07999 * 120.74698 * 180.26032 * 23 22 21 41 41 H 1.08000 * 120.30226 * 179.70964 * 24 23 22 42 42 H 1.08001 * 119.54146 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2646 -0.8717 -1.2949 7 6 5.7400 -1.0948 -1.0834 8 1 6.3974 -0.2515 -0.9319 9 6 6.2505 -2.3757 -1.0834 10 7 5.4500 -3.4025 -1.2685 11 14 8.0793 -2.6521 -0.8220 12 1 8.3537 -2.8091 0.6290 13 1 8.5020 -3.8805 -1.5415 14 1 8.8360 -1.4865 -1.3455 15 6 4.1175 1.3139 -2.3619 16 8 4.4417 0.7910 -3.4118 17 6 3.8801 2.7604 -2.3055 18 6 4.1250 3.6585 -3.3096 19 7 3.8249 4.8922 -3.0045 20 6 3.3427 5.1137 -1.8144 21 6 2.9483 6.4422 -1.2987 22 6 3.0916 7.5692 -2.1080 23 6 2.7129 8.8051 -1.6128 24 6 2.2132 8.8759 -0.3201 25 6 2.1032 7.7182 0.4298 26 7 2.4652 6.5538 -0.0666 27 16 3.2284 3.6534 -0.9335 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8508 0.5684 0.8426 34 1 3.9785 2.1765 0.0902 35 1 3.7042 -1.3789 -0.5095 36 1 3.9722 -1.2714 -2.2659 37 1 5.8091 -4.3036 -1.2681 38 1 4.5303 3.3719 -4.2688 39 1 3.4889 7.4784 -3.1082 40 1 2.8081 9.6950 -2.2173 41 1 1.9134 9.8259 0.0969 42 1 1.7151 7.7706 1.4363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609137037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:07 Heat of formation + Delta-G solvation = -6.461639 kcal Electronic energy + Delta-G solvation = -27521.633261 eV Core-core repulsion = 23593.592965 eV Total energy + Delta-G solvation = -3928.040296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41910 -41.02923 -40.11383 -38.81795 -36.71883 -34.92272 -33.74516 -33.27070 -31.60829 -30.77715 -29.05263 -27.40323 -27.12842 -25.29482 -24.49214 -24.28548 -23.89995 -21.92458 -20.43110 -19.45242 -18.64784 -18.26596 -17.94359 -17.35214 -17.12420 -16.87979 -16.79086 -16.52211 -16.36369 -16.14628 -15.79954 -15.51264 -15.33085 -14.82137 -14.65465 -14.60344 -14.21156 -14.04912 -13.78447 -13.55822 -13.20752 -13.07691 -12.85549 -12.79732 -12.58141 -12.51745 -12.23212 -12.14523 -11.75075 -11.16940 -11.04939 -10.91413 -10.82869 -10.72444 -10.62309 -10.44175 -10.24500 -9.71450 -9.38966 -8.21671 -6.36425 -1.22989 0.02930 0.17001 0.32187 0.52274 1.36458 1.39898 1.43604 1.50552 2.02874 2.15579 2.40294 2.49079 2.76917 2.85591 3.07935 3.42001 3.70537 3.76674 3.90561 4.00821 4.03562 4.09984 4.10951 4.14167 4.19432 4.34887 4.49443 4.53792 4.56000 4.69669 4.83995 4.85126 4.91692 5.05308 5.13885 5.22662 5.24261 5.46766 5.68892 5.76960 6.04188 6.21085 6.38873 6.53884 6.71260 6.83147 7.12312 7.34665 8.85979 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003056 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.306984 B = 9161.316519 C =10096.874288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.041 3.959 4 C 0.094 3.906 5 N -0.586 5.586 6 C 0.276 3.724 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.011 3.989 10 N -0.925 5.925 11 Si 0.968 3.032 12 H -0.262 1.262 13 H -0.279 1.279 14 H -0.275 1.275 15 C 0.577 3.423 16 O -0.575 6.575 17 C -0.328 4.328 18 C 0.121 3.879 19 N -0.480 5.480 20 C 0.039 3.961 21 C 0.149 3.851 22 C -0.129 4.129 23 C -0.076 4.076 24 C -0.143 4.143 25 C 0.098 3.902 26 N -0.496 5.496 27 S 0.321 5.679 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.106 0.894 32 H 0.048 0.952 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.035 0.965 36 H -0.004 1.004 37 H 0.268 0.732 38 H 0.190 0.810 39 H 0.142 0.858 40 H 0.172 0.828 41 H 0.180 0.820 42 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.505 27.356 7.458 30.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.037 4.037 4 C -0.030 4.030 5 N -0.315 5.315 6 C 0.156 3.844 7 C -0.585 4.585 8 H 0.070 0.930 9 C -0.189 4.189 10 N -0.564 5.564 11 Si 0.792 3.208 12 H -0.186 1.186 13 H -0.205 1.205 14 H -0.200 1.200 15 C 0.364 3.636 16 O -0.457 6.457 17 C -0.453 4.453 18 C -0.040 4.040 19 N -0.196 5.196 20 C -0.230 4.230 21 C 0.013 3.987 22 C -0.153 4.153 23 C -0.101 4.101 24 C -0.164 4.164 25 C -0.061 4.061 26 N -0.207 5.207 27 S 0.583 5.417 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.053 0.947 36 H 0.014 0.986 37 H 0.077 0.923 38 H 0.207 0.793 39 H 0.160 0.840 40 H 0.190 0.810 41 H 0.197 0.803 42 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -11.621 26.129 8.137 29.732 hybrid contribution 1.285 -0.215 -1.823 2.240 sum -10.336 25.914 6.314 28.605 Atomic orbital electron populations 1.22927 0.79518 1.03569 1.01023 1.88016 1.21551 1.27806 1.95527 1.23326 0.92564 0.85528 1.02298 1.22159 0.94013 0.98765 0.88107 1.48008 1.63967 1.10505 1.09002 1.18749 0.94983 0.74679 0.96019 1.21696 0.94007 0.92717 1.50125 0.93014 1.25830 1.03112 0.95429 0.94499 1.70063 1.37153 0.99197 1.50034 0.85414 0.78955 0.77539 0.78885 1.18645 1.20455 1.19951 1.17187 0.77697 0.84690 0.83978 1.90762 1.50242 1.73617 1.31086 1.26335 1.17879 0.98735 1.02316 1.22390 0.96398 0.85199 0.99988 1.66368 1.15174 1.21265 1.16755 1.25933 1.01512 1.00962 0.94612 1.18448 0.99596 0.89169 0.91506 1.22289 0.98995 0.92625 1.01403 1.22050 0.94168 0.97615 0.96300 1.22795 0.97654 1.01477 0.94441 1.23366 0.94891 0.86472 1.01414 1.67398 1.10933 1.30690 1.11631 1.84093 1.52730 0.93667 1.11182 0.89351 0.91413 0.94035 0.87628 0.93381 0.87269 0.88236 0.94748 0.98613 0.92334 0.79286 0.84020 0.81042 0.80309 0.78926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.86 16 2 O -0.41 -13.90 10.60 -148.98 -1.58 -15.48 16 3 C 0.04 1.16 4.84 71.98 0.35 1.51 16 4 C 0.09 3.23 5.32 86.38 0.46 3.69 16 5 N -0.59 -27.06 2.44 -830.84 -2.02 -29.08 16 6 C 0.28 15.67 5.10 85.63 0.44 16.10 16 7 C -0.55 -32.70 9.35 25.60 0.24 -32.47 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.01 0.63 5.46 84.66 0.46 1.09 16 10 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 11 Si 0.97 46.10 29.54 68.60 2.03 48.13 16 12 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 14 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 15 C 0.58 27.03 7.52 86.45 0.65 27.68 16 16 O -0.58 -32.14 16.53 -4.31 -0.07 -32.22 16 17 C -0.33 -11.93 6.12 24.17 0.15 -11.78 16 18 C 0.12 4.09 11.16 84.57 0.94 5.03 16 19 N -0.48 -14.58 10.01 -191.86 -1.92 -16.50 16 20 C 0.04 1.07 7.16 87.47 0.63 1.69 16 21 C 0.15 3.37 6.75 41.85 0.28 3.65 16 22 C -0.13 -2.29 9.71 22.62 0.22 -2.07 16 23 C -0.08 -0.75 10.17 22.44 0.23 -0.52 16 24 C -0.14 -1.03 10.11 22.43 0.23 -0.81 16 25 C 0.10 1.11 11.18 84.75 0.95 2.06 16 26 N -0.50 -9.71 10.01 -185.05 -1.85 -11.57 16 27 S 0.32 8.68 15.41 -56.49 -0.87 7.81 16 28 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.05 1.39 6.30 -2.74 -0.02 1.37 16 33 H 0.11 3.77 8.01 -2.39 -0.02 3.75 16 34 H 0.10 2.94 4.45 -21.08 -0.09 2.85 16 35 H 0.03 2.00 7.98 -2.39 -0.02 1.98 16 36 H 0.00 -0.28 7.54 -2.39 -0.02 -0.29 16 37 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 38 H 0.19 6.18 8.06 -2.91 -0.02 6.16 16 39 H 0.14 2.58 7.78 -2.91 -0.02 2.56 16 40 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 41 H 0.18 -0.11 8.06 -2.91 -0.02 -0.13 16 42 H 0.19 0.86 8.06 -2.91 -0.02 0.84 16 Total: -1.00 -83.45 373.07 2.43 -81.02 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.97 Total: 8.12 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 7.47 Total: 16.72 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -5.51 Total: -114.11 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -1.65 Total: -47.70 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: 8.68 SS G_CDS: -0.87 Total: 7.81 kcal Total: -83.45 2.43 -81.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609137037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.558 kcal (2) G-P(sol) polarization free energy of solvation -83.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds