Wall clock time and date at job start Wed Apr 1 2020 04:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00449 * 2 1 4 4 C 1.53005 * 109.47230 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47027 * 65.00024 * 4 3 2 6 6 C 1.46500 * 119.99727 * 262.56575 * 5 4 3 7 7 C 1.50698 * 109.47374 * 274.94400 * 6 5 4 8 8 H 1.08002 * 119.99742 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00131 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00006 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99764 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46782 * 90.00669 * 11 9 7 13 13 H 1.48501 * 109.46918 * 210.00031 * 11 9 7 14 14 H 1.48500 * 109.47249 * 330.00718 * 11 9 7 15 15 C 1.34776 * 120.00049 * 82.57142 * 5 4 3 16 16 O 1.21703 * 120.00008 * 182.57720 * 15 5 4 17 17 C 1.46588 * 119.99734 * 2.57498 * 15 5 4 18 18 C 1.36881 * 126.11966 * 172.55062 * 17 15 5 19 19 N 1.30635 * 114.03721 * 179.73136 * 18 17 15 20 20 C 1.30334 * 117.30191 * 0.50708 * 19 18 17 21 21 C 1.47799 * 124.75181 * 179.76743 * 20 19 18 22 22 C 1.40018 * 120.56042 * 359.70121 * 21 20 19 23 23 C 1.38347 * 118.28988 * 179.97438 * 22 21 20 24 24 C 1.38358 * 119.30928 * 0.02562 * 23 22 21 25 25 N 1.31915 * 121.08170 * 359.97438 * 24 23 22 26 26 C 1.31702 * 121.87760 * 359.70069 * 25 24 23 27 27 S 1.70919 * 110.49517 * 359.51062 * 20 19 18 28 28 H 1.09006 * 109.46992 * 59.99794 * 1 2 3 29 29 H 1.08998 * 109.47448 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47009 * 300.00138 * 1 2 3 31 31 H 1.09000 * 109.47227 * 59.99902 * 3 2 1 32 32 H 1.08995 * 109.47516 * 300.00014 * 3 2 1 33 33 H 1.09006 * 109.46662 * 304.99703 * 4 3 2 34 34 H 1.08998 * 109.46967 * 185.00023 * 4 3 2 35 35 H 1.08994 * 109.47272 * 34.94789 * 6 5 4 36 36 H 1.09006 * 109.46876 * 154.94626 * 6 5 4 37 37 H 0.96997 * 120.00146 * 179.97438 * 10 9 7 38 38 H 1.08003 * 122.98318 * 359.97438 * 18 17 15 39 39 H 1.08001 * 120.85351 * 0.02919 * 22 21 20 40 40 H 1.08006 * 120.35162 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.45980 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.72241 * 180.29112 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1844 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.2620 -0.8719 -1.2977 7 6 5.6796 -1.1158 -0.8483 8 1 6.3049 -0.2842 -0.5586 9 6 6.1786 -2.4005 -0.8080 10 7 7.4155 -2.6134 -0.4154 11 14 5.0972 -3.8387 -1.3098 12 1 5.2518 -4.0900 -2.7652 13 1 5.5022 -5.0502 -0.5525 14 1 3.6782 -3.5191 -1.0106 15 6 4.1173 1.3147 -2.3632 16 8 4.4375 0.7917 -3.4144 17 6 3.8856 2.7610 -2.3048 18 6 4.1293 3.6584 -3.3092 19 7 3.8304 4.8929 -3.0039 20 6 3.3591 5.1160 -1.8094 21 6 2.9730 6.4450 -1.2906 22 6 3.1050 7.5870 -2.0899 23 6 2.7289 8.8072 -1.5573 24 6 2.2396 8.8598 -0.2642 25 7 2.1262 7.7671 0.4661 26 6 2.4648 6.5820 0.0018 27 16 3.2434 3.6554 -0.9293 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8514 0.5680 0.8410 34 1 3.9786 2.1763 0.0889 35 1 3.5752 -1.4001 -0.6364 36 1 4.1364 -1.2356 -2.3176 37 1 7.7665 -3.5172 -0.3867 38 1 4.5294 3.3709 -4.2703 39 1 3.4896 7.5170 -3.0967 40 1 2.8162 9.7093 -2.1446 41 1 1.9456 9.8111 0.1542 42 1 2.3531 5.7095 0.6284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611185206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:12 Heat of formation + Delta-G solvation = 20.605248 kcal Electronic energy + Delta-G solvation = -27577.873572 eV Core-core repulsion = 23651.006984 eV Total energy + Delta-G solvation = -3926.866587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59413 -39.84288 -39.00617 -37.67953 -35.20725 -33.47091 -32.72723 -32.27958 -30.41876 -29.66276 -27.80759 -26.38236 -26.01674 -24.18286 -23.42397 -23.04342 -22.65175 -20.41042 -19.27031 -18.18597 -17.47223 -17.01204 -16.93334 -16.72318 -16.16983 -15.86951 -15.63685 -15.33792 -15.12416 -14.81135 -14.57372 -14.22882 -14.00339 -13.97005 -13.64154 -13.44699 -13.35284 -12.62378 -12.49718 -12.39956 -12.21508 -12.01883 -11.64074 -11.53553 -11.19952 -10.99622 -10.53499 -10.50396 -10.18751 -9.96760 -9.92948 -9.88910 -9.70163 -9.58718 -9.39510 -9.24246 -8.59841 -8.56399 -7.88664 -6.10505 -4.10252 -0.26294 0.81336 1.02333 1.05386 1.47691 2.57326 3.30271 3.36034 3.40542 3.42930 3.47589 3.58460 3.67825 3.75851 4.06599 4.39987 4.43246 4.52303 4.60948 4.68330 4.82426 4.99196 5.11941 5.15471 5.19326 5.22074 5.24386 5.27670 5.30863 5.34842 5.39450 5.66100 5.70306 5.76533 5.93815 6.05453 6.19788 6.73835 6.92751 7.14338 7.15408 7.49157 7.50699 7.58134 7.99321 8.40682 8.66077 8.91260 9.49220 11.02499 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.003022 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.691291 B = 9263.294945 C =10021.451500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.036 3.964 4 C 0.102 3.898 5 N -0.573 5.573 6 C 0.220 3.780 7 C -0.535 4.535 8 H 0.075 0.925 9 C 0.075 3.925 10 N -0.896 5.896 11 Si 0.873 3.127 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.261 1.261 15 C 0.583 3.417 16 O -0.522 6.522 17 C -0.275 4.275 18 C 0.115 3.885 19 N -0.471 5.471 20 C 0.036 3.964 21 C -0.073 4.073 22 C -0.031 4.031 23 C -0.172 4.172 24 C 0.106 3.894 25 N -0.479 5.479 26 C 0.121 3.879 27 S 0.220 5.780 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.265 0.735 38 H 0.192 0.808 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.161 0.839 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.746 20.316 2.038 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C -0.042 4.042 4 C -0.025 4.025 5 N -0.302 5.302 6 C 0.100 3.900 7 C -0.574 4.574 8 H 0.093 0.907 9 C -0.127 4.127 10 N -0.534 5.534 11 Si 0.700 3.300 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.368 3.632 16 O -0.400 6.400 17 C -0.400 4.400 18 C -0.043 4.043 19 N -0.185 5.185 20 C -0.234 4.234 21 C -0.078 4.078 22 C -0.060 4.060 23 C -0.192 4.192 24 C -0.051 4.051 25 N -0.187 5.187 26 C -0.040 4.040 27 S 0.481 5.519 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.208 0.792 39 H 0.165 0.835 40 H 0.159 0.841 41 H 0.178 0.822 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.931 19.940 3.040 25.096 hybrid contribution 0.209 -0.769 -1.946 2.103 sum -14.722 19.171 1.095 24.197 Atomic orbital electron populations 1.22745 0.81499 1.02794 0.99575 1.88043 1.19181 1.26631 1.95228 1.23341 0.94548 0.85788 1.00564 1.21867 0.91724 0.98408 0.90488 1.47729 1.63992 1.11175 1.07333 1.19806 0.97206 0.74342 0.98660 1.21322 0.96055 0.94511 1.45470 0.90712 1.24812 0.94891 0.98628 0.94405 1.69889 1.14679 1.21610 1.47261 0.86878 0.81600 0.82235 0.79290 1.19897 1.21055 1.18583 1.16694 0.78629 0.83141 0.84783 1.90823 1.47977 1.71959 1.29228 1.26583 1.14470 1.00450 0.98465 1.22359 0.96877 0.84977 1.00136 1.66375 1.14054 1.21999 1.16056 1.25669 1.02923 0.99995 0.94836 1.18968 1.02750 0.90413 0.95705 1.21806 0.93277 0.90791 1.00165 1.22187 1.00981 0.98728 0.97339 1.22956 0.94082 0.97122 0.90957 1.67704 1.15764 0.98507 1.36682 1.22850 0.93460 0.95918 0.91736 1.84307 1.56457 0.96048 1.15078 0.94380 0.89607 0.94176 0.91718 0.93111 0.86521 0.89978 0.93793 0.94063 0.92495 0.79168 0.83489 0.84060 0.82227 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.37 -5.66 10.31 -35.23 -0.36 -6.02 16 3 C 0.04 0.47 4.85 37.16 0.18 0.65 16 4 C 0.10 1.59 5.36 -4.04 -0.02 1.57 16 5 N -0.57 -11.78 2.42 -176.64 -0.43 -12.21 16 6 C 0.22 5.36 4.27 -5.19 -0.02 5.34 16 7 C -0.54 -15.16 9.94 -34.44 -0.34 -15.50 16 8 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 10 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 11 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 15 C 0.58 12.02 7.56 -12.89 -0.10 11.92 16 16 O -0.52 -12.66 16.37 5.19 0.08 -12.58 16 17 C -0.28 -4.46 6.12 -36.71 -0.22 -4.69 16 18 C 0.11 1.74 11.16 -18.55 -0.21 1.54 16 19 N -0.47 -6.59 10.11 -12.01 -0.12 -6.71 16 20 C 0.04 0.44 7.14 -14.28 -0.10 0.34 16 21 C -0.07 -0.77 5.89 -104.83 -0.62 -1.39 16 22 C -0.03 -0.29 9.80 -38.87 -0.38 -0.67 16 23 C -0.17 -1.19 10.10 -39.50 -0.40 -1.58 16 24 C 0.11 0.79 11.17 -17.47 -0.20 0.59 16 25 N -0.48 -4.66 10.35 -12.90 -0.13 -4.79 16 26 C 0.12 1.16 10.74 -17.12 -0.18 0.98 16 27 S 0.22 2.61 14.60 -107.50 -1.57 1.04 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.64 6.33 -51.71 -0.33 0.32 16 33 H 0.12 1.89 8.02 -51.93 -0.42 1.47 16 34 H 0.08 1.13 4.42 -22.29 -0.10 1.03 16 35 H 0.04 1.05 6.83 -51.93 -0.35 0.70 16 36 H 0.04 1.08 6.67 -51.93 -0.35 0.73 16 37 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.19 2.73 8.06 -52.48 -0.42 2.30 16 39 H 0.15 1.29 7.87 -52.49 -0.41 0.88 16 40 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 41 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.16 1.23 7.24 -52.48 -0.38 0.85 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -35.78 367.41 -7.37 -43.15 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.89 Total: -0.29 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.60 Total: 2.63 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.09 Total: -50.33 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.28 Total: -18.60 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.57 Total: 1.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.78 -7.37 -43.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611185206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.755 kcal (2) G-P(sol) polarization free energy of solvation -35.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds