Wall clock time and date at job start Wed Apr 1 2020 04:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00449 * 2 1 4 4 C 1.53005 * 109.47230 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47027 * 65.00024 * 4 3 2 6 6 C 1.46500 * 119.99727 * 262.56575 * 5 4 3 7 7 C 1.50698 * 109.47374 * 274.94400 * 6 5 4 8 8 H 1.08002 * 119.99742 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00131 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00006 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99764 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46782 * 90.00669 * 11 9 7 13 13 H 1.48501 * 109.46918 * 210.00031 * 11 9 7 14 14 H 1.48500 * 109.47249 * 330.00718 * 11 9 7 15 15 C 1.34776 * 120.00049 * 82.57142 * 5 4 3 16 16 O 1.21703 * 120.00008 * 182.57720 * 15 5 4 17 17 C 1.46588 * 119.99734 * 2.57498 * 15 5 4 18 18 C 1.36881 * 126.11966 * 172.55062 * 17 15 5 19 19 N 1.30635 * 114.03721 * 179.73136 * 18 17 15 20 20 C 1.30334 * 117.30191 * 0.50708 * 19 18 17 21 21 C 1.47799 * 124.75181 * 179.76743 * 20 19 18 22 22 C 1.40018 * 120.56042 * 359.70121 * 21 20 19 23 23 C 1.38347 * 118.28988 * 179.97438 * 22 21 20 24 24 C 1.38358 * 119.30928 * 0.02562 * 23 22 21 25 25 N 1.31915 * 121.08170 * 359.97438 * 24 23 22 26 26 C 1.31702 * 121.87760 * 359.70069 * 25 24 23 27 27 S 1.70919 * 110.49517 * 359.51062 * 20 19 18 28 28 H 1.09006 * 109.46992 * 59.99794 * 1 2 3 29 29 H 1.08998 * 109.47448 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47009 * 300.00138 * 1 2 3 31 31 H 1.09000 * 109.47227 * 59.99902 * 3 2 1 32 32 H 1.08995 * 109.47516 * 300.00014 * 3 2 1 33 33 H 1.09006 * 109.46662 * 304.99703 * 4 3 2 34 34 H 1.08998 * 109.46967 * 185.00023 * 4 3 2 35 35 H 1.08994 * 109.47272 * 34.94789 * 6 5 4 36 36 H 1.09006 * 109.46876 * 154.94626 * 6 5 4 37 37 H 0.96997 * 120.00146 * 179.97438 * 10 9 7 38 38 H 1.08003 * 122.98318 * 359.97438 * 18 17 15 39 39 H 1.08001 * 120.85351 * 0.02919 * 22 21 20 40 40 H 1.08006 * 120.35162 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.45980 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.72241 * 180.29112 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1844 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.2620 -0.8719 -1.2977 7 6 5.6796 -1.1158 -0.8483 8 1 6.3049 -0.2842 -0.5586 9 6 6.1786 -2.4005 -0.8080 10 7 7.4155 -2.6134 -0.4154 11 14 5.0972 -3.8387 -1.3098 12 1 5.2518 -4.0900 -2.7652 13 1 5.5022 -5.0502 -0.5525 14 1 3.6782 -3.5191 -1.0106 15 6 4.1173 1.3147 -2.3632 16 8 4.4375 0.7917 -3.4144 17 6 3.8856 2.7610 -2.3048 18 6 4.1293 3.6584 -3.3092 19 7 3.8304 4.8929 -3.0039 20 6 3.3591 5.1160 -1.8094 21 6 2.9730 6.4450 -1.2906 22 6 3.1050 7.5870 -2.0899 23 6 2.7289 8.8072 -1.5573 24 6 2.2396 8.8598 -0.2642 25 7 2.1262 7.7671 0.4661 26 6 2.4648 6.5820 0.0018 27 16 3.2434 3.6554 -0.9293 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8514 0.5680 0.8410 34 1 3.9786 2.1763 0.0889 35 1 3.5752 -1.4001 -0.6364 36 1 4.1364 -1.2356 -2.3176 37 1 7.7665 -3.5172 -0.3867 38 1 4.5294 3.3709 -4.2703 39 1 3.4896 7.5170 -3.0967 40 1 2.8162 9.7093 -2.1446 41 1 1.9456 9.8111 0.1542 42 1 2.3531 5.7095 0.6284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611185206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:11 Heat of formation + Delta-G solvation = -5.474185 kcal Electronic energy + Delta-G solvation = -27579.004461 eV Core-core repulsion = 23651.006984 eV Total energy + Delta-G solvation = -3927.997477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44651 -41.09345 -40.17694 -38.82815 -36.78330 -34.89823 -34.20874 -32.98971 -31.93437 -30.82134 -29.42451 -27.33570 -27.11556 -25.18088 -24.46703 -24.29543 -23.89121 -21.82796 -20.33257 -19.48408 -19.14227 -18.30090 -18.01431 -17.76182 -17.15583 -16.97284 -16.77814 -16.60840 -16.33628 -16.05976 -15.71959 -15.59834 -15.27372 -14.87725 -14.68876 -14.65436 -14.46428 -14.10132 -13.92935 -13.69835 -13.30874 -13.20271 -13.04230 -12.85986 -12.55685 -12.49433 -12.19094 -12.05427 -11.75818 -11.40152 -11.19043 -10.87313 -10.83577 -10.65737 -10.61213 -10.58623 -10.28824 -9.72819 -9.37709 -8.35247 -6.40631 -1.25455 -0.03474 0.11186 0.24466 0.39983 1.33472 1.36317 1.43672 1.46575 1.95841 2.12485 2.30928 2.72873 2.75846 2.80391 2.99299 3.39052 3.46718 3.69315 3.84920 3.89108 3.96214 3.99619 4.08302 4.12045 4.14406 4.36427 4.47799 4.51473 4.58780 4.68327 4.71019 4.84641 4.87428 4.90631 4.91500 5.09951 5.14935 5.37367 5.46124 5.60035 6.17238 6.21014 6.38055 6.48790 6.60241 6.85386 7.03503 7.24846 8.81223 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.003022 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.691291 B = 9263.294945 C =10021.451500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.040 3.960 4 C 0.093 3.907 5 N -0.582 5.582 6 C 0.235 3.765 7 C -0.540 4.540 8 H 0.034 0.966 9 C 0.018 3.982 10 N -0.941 5.941 11 Si 0.941 3.059 12 H -0.276 1.276 13 H -0.273 1.273 14 H -0.241 1.241 15 C 0.579 3.421 16 O -0.576 6.576 17 C -0.325 4.325 18 C 0.126 3.874 19 N -0.489 5.489 20 C 0.050 3.950 21 C -0.101 4.101 22 C -0.038 4.038 23 C -0.163 4.163 24 C 0.112 3.888 25 N -0.500 5.500 26 C 0.122 3.878 27 S 0.291 5.709 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.021 0.979 37 H 0.269 0.731 38 H 0.188 0.812 39 H 0.146 0.854 40 H 0.175 0.825 41 H 0.194 0.806 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.560 22.922 3.375 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.038 4.038 4 C -0.032 4.032 5 N -0.311 5.311 6 C 0.113 3.887 7 C -0.579 4.579 8 H 0.052 0.948 9 C -0.181 4.181 10 N -0.581 5.581 11 Si 0.764 3.236 12 H -0.201 1.201 13 H -0.198 1.198 14 H -0.164 1.164 15 C 0.367 3.633 16 O -0.458 6.458 17 C -0.449 4.449 18 C -0.034 4.034 19 N -0.204 5.204 20 C -0.219 4.219 21 C -0.107 4.107 22 C -0.067 4.067 23 C -0.182 4.182 24 C -0.045 4.045 25 N -0.208 5.208 26 C -0.039 4.039 27 S 0.554 5.446 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.205 0.795 39 H 0.164 0.836 40 H 0.193 0.807 41 H 0.211 0.789 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.782 22.579 4.435 29.081 hybrid contribution 1.074 -1.241 -2.282 2.811 sum -16.708 21.338 2.153 27.186 Atomic orbital electron populations 1.22940 0.79418 1.03649 1.01105 1.87979 1.21567 1.27799 1.95570 1.23363 0.92011 0.85730 1.02718 1.22181 0.94275 0.98800 0.87909 1.47725 1.64207 1.09966 1.09230 1.19360 0.94855 0.77293 0.97203 1.21530 0.97641 0.93549 1.45139 0.94753 1.25738 0.96293 1.01776 0.94267 1.70027 1.16702 1.22611 1.48760 0.85803 0.80642 0.78512 0.78623 1.20118 1.19755 1.16386 1.17186 0.77349 0.84874 0.83913 1.90763 1.50428 1.73614 1.31005 1.26072 1.18612 0.98447 1.01744 1.22416 0.95663 0.85385 0.99928 1.66461 1.15730 1.21069 1.17095 1.26142 1.00232 1.01215 0.94281 1.19039 1.05111 0.89796 0.96723 1.21994 0.93140 0.91376 1.00169 1.22529 0.99368 0.98979 0.97369 1.23602 0.92234 0.97722 0.90937 1.67783 1.16592 0.99021 1.37419 1.23042 0.92812 0.96671 0.91348 1.83740 1.54796 0.94037 1.12044 0.93838 0.89264 0.91555 0.87286 0.92840 0.87362 0.88260 0.92757 0.96081 0.92148 0.79517 0.83594 0.80744 0.78946 0.81314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.79 10.31 -148.98 -1.54 -13.32 16 3 C 0.04 0.95 4.85 71.98 0.35 1.30 16 4 C 0.09 2.88 5.36 86.38 0.46 3.35 16 5 N -0.58 -24.74 2.42 -830.97 -2.01 -26.75 16 6 C 0.23 11.82 4.27 85.63 0.37 12.19 16 7 C -0.54 -32.00 9.94 25.60 0.25 -31.74 16 8 H 0.03 2.24 8.06 -2.91 -0.02 2.22 16 9 C 0.02 1.07 5.47 84.66 0.46 1.53 16 10 N -0.94 -59.50 13.96 21.45 0.30 -59.20 16 11 Si 0.94 45.18 27.47 68.60 1.88 47.07 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 14 H -0.24 -10.65 6.54 99.48 0.65 -10.00 16 15 C 0.58 25.04 7.56 86.42 0.65 25.69 16 16 O -0.58 -29.80 16.37 -4.36 -0.07 -29.87 16 17 C -0.32 -10.74 6.12 24.13 0.15 -10.60 16 18 C 0.13 3.93 11.16 84.55 0.94 4.87 16 19 N -0.49 -13.46 10.11 -191.91 -1.94 -15.40 16 20 C 0.05 1.17 7.14 87.45 0.62 1.80 16 21 C -0.10 -1.90 5.89 -20.00 -0.12 -2.02 16 22 C -0.04 -0.59 9.80 22.73 0.22 -0.37 16 23 C -0.16 -1.61 10.10 22.32 0.23 -1.39 16 24 C 0.11 1.20 11.17 84.71 0.95 2.15 16 25 N -0.50 -8.07 10.35 -194.73 -2.01 -10.09 16 26 C 0.12 2.00 10.74 85.03 0.91 2.91 16 27 S 0.29 6.45 14.60 -56.49 -0.82 5.63 16 28 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.25 6.33 -2.53 -0.02 1.24 16 33 H 0.11 3.52 8.02 -2.38 -0.02 3.50 16 34 H 0.10 2.64 4.42 -21.24 -0.09 2.55 16 35 H 0.05 2.62 6.83 -2.39 -0.02 2.60 16 36 H 0.02 1.15 6.67 -2.38 -0.02 1.13 16 37 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.19 5.71 8.06 -2.91 -0.02 5.69 16 39 H 0.15 2.29 7.87 -2.91 -0.02 2.27 16 40 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 41 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 42 H 0.17 2.12 7.24 -2.91 -0.02 2.10 16 Total: -1.00 -82.78 367.41 2.40 -80.38 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.92 Total: 10.16 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 7.70 Total: 11.40 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -5.67 Total: -111.45 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.61 Total: -43.19 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Atomic # 16 Polarization: 6.45 SS G_CDS: -0.82 Total: 5.63 kcal Total: -82.78 2.40 -80.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611185206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.905 kcal (2) G-P(sol) polarization free energy of solvation -82.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds