Wall clock time and date at job start Wed Apr 1 2020 04:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99891 * 2 1 4 4 C 1.53006 * 109.47098 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47095 * 64.99481 * 4 3 2 6 6 C 1.46501 * 119.99975 * 282.83490 * 5 4 3 7 7 C 1.50698 * 109.46979 * 264.96670 * 6 5 4 8 8 H 1.07995 * 120.00287 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99776 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00131 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00230 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46845 * 90.00007 * 11 9 7 13 13 H 1.48494 * 109.47688 * 210.00408 * 11 9 7 14 14 H 1.48503 * 109.46934 * 330.00373 * 11 9 7 15 15 C 1.34773 * 119.99464 * 102.83981 * 5 4 3 16 16 O 1.21598 * 119.99397 * 186.97915 * 15 5 4 17 17 C 1.47531 * 120.00559 * 6.97874 * 15 5 4 18 18 C 1.39710 * 120.19223 * 326.67918 * 17 15 5 19 19 C 1.37781 * 119.90826 * 179.97438 * 18 17 15 20 20 C 1.38544 * 120.30492 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.80943 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.46728 * 0.02562 * 21 20 19 23 23 F 1.39898 * 109.47037 * 120.00146 * 21 20 19 24 24 F 1.39892 * 109.47087 * 240.00086 * 21 20 19 25 25 C 1.38057 * 120.38755 * 0.02562 * 20 19 18 26 26 C 1.38709 * 120.08425 * 359.97438 * 25 20 19 27 27 O 1.35655 * 120.15228 * 180.27764 * 26 25 20 28 28 H 1.08997 * 109.47142 * 300.00031 * 1 2 3 29 29 H 1.09000 * 109.46956 * 60.00755 * 1 2 3 30 30 H 1.09003 * 109.46779 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47715 * 59.99333 * 3 2 1 32 32 H 1.08999 * 109.47066 * 299.99642 * 3 2 1 33 33 H 1.08999 * 109.46861 * 304.99553 * 4 3 2 34 34 H 1.08994 * 109.46742 * 184.99744 * 4 3 2 35 35 H 1.08999 * 109.47287 * 24.96817 * 6 5 4 36 36 H 1.09003 * 109.46645 * 144.97161 * 6 5 4 37 37 H 0.96999 * 119.99952 * 179.97438 * 10 9 7 38 38 H 1.08003 * 120.04375 * 0.02562 * 18 17 15 39 39 H 1.08000 * 119.84831 * 180.02562 * 19 18 17 40 40 H 1.08001 * 119.95968 * 180.02562 * 25 20 19 41 41 H 0.96704 * 113.99910 * 269.72957 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 3.8395 -0.8821 -1.4410 7 6 5.1328 -1.5610 -1.0702 8 1 5.9721 -0.9738 -0.7280 9 6 5.2441 -2.9319 -1.1667 10 7 4.2218 -3.6470 -1.5829 11 14 6.8474 -3.7734 -0.7077 12 1 6.8262 -4.1256 0.7348 13 1 7.0076 -5.0084 -1.5165 14 1 7.9830 -2.8550 -0.9764 15 6 4.5061 1.3244 -2.2312 16 8 4.7539 0.8333 -3.3156 17 6 4.7860 2.7521 -1.9866 18 6 3.9616 3.4943 -1.1373 19 6 4.2287 4.8272 -0.9127 20 6 5.3117 5.4361 -1.5257 21 6 5.5932 6.8948 -1.2725 22 9 4.6336 7.4092 -0.3941 23 9 6.8649 7.0328 -0.7060 24 9 5.5428 7.5962 -2.4818 25 6 6.1339 4.7147 -2.3680 26 6 5.8799 3.3719 -2.6056 27 8 6.6902 2.6604 -3.4286 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8515 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.0370 -1.2573 -0.8058 36 1 3.6052 -1.0921 -2.4847 37 1 4.3003 -4.6114 -1.6512 38 1 3.1164 3.0237 -0.6570 39 1 3.5910 5.3999 -0.2557 40 1 6.9765 5.1962 -2.8420 41 1 6.4145 2.6687 -4.3555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611453887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:02 Heat of formation + Delta-G solvation = -212.468085 kcal Electronic energy + Delta-G solvation = -31357.078262 eV Core-core repulsion = 26403.202494 eV Total energy + Delta-G solvation = -4953.875768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.42431 -47.94637 -47.87289 -40.68913 -38.57232 -37.55848 -36.95504 -34.96935 -33.05555 -31.95355 -30.38244 -29.63158 -27.65328 -26.38319 -25.93302 -23.40417 -23.22953 -22.67919 -21.96830 -19.57926 -18.87230 -18.74101 -18.68121 -17.37184 -17.10022 -16.52632 -16.41754 -16.12668 -15.60217 -15.15339 -15.01397 -14.80440 -14.76418 -14.74883 -14.45162 -14.31912 -14.25548 -14.04302 -14.03382 -13.79769 -13.69238 -13.05400 -12.67460 -12.44815 -12.16981 -12.11246 -11.94458 -11.78496 -11.39115 -11.31534 -10.93448 -10.88245 -10.68742 -10.40827 -10.11665 -9.63047 -9.48362 -9.36269 -9.04219 -8.99037 -8.34731 -7.70675 -5.97425 -4.01010 0.37986 0.88138 2.35406 2.80206 3.34589 3.38186 3.40770 3.44451 3.53937 3.70092 3.84625 3.93419 4.12263 4.17397 4.49214 4.50506 4.63435 4.74399 4.99770 5.17654 5.21926 5.29629 5.35835 5.37348 5.43843 5.50769 5.51417 5.53909 5.71841 5.80397 5.86536 5.96851 6.15653 6.26134 7.17856 7.34782 7.48330 7.61818 7.64566 8.00019 8.29470 8.35317 8.83804 9.05011 9.62516 11.10685 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.003407 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.774529 B = 8216.316339 C = 9652.503856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.040 3.960 4 C 0.076 3.924 5 N -0.577 5.577 6 C 0.247 3.753 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.546 3.454 16 O -0.523 6.523 17 C -0.113 4.113 18 C -0.103 4.103 19 C -0.093 4.093 20 C -0.158 4.158 21 C 0.510 3.490 22 F -0.176 7.176 23 F -0.175 7.175 24 F -0.176 7.176 25 C -0.104 4.104 26 C 0.163 3.837 27 O -0.475 6.475 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.162 0.838 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 20.922 2.802 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.038 4.038 4 C -0.048 4.048 5 N -0.307 5.307 6 C 0.129 3.871 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.332 3.668 16 O -0.400 6.400 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.160 4.160 21 C 0.456 3.544 22 F -0.157 7.157 23 F -0.156 7.156 24 F -0.157 7.157 25 C -0.123 4.123 26 C 0.116 3.884 27 O -0.287 6.287 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.124 0.876 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.179 0.821 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -3.712 20.156 2.687 20.670 hybrid contribution 0.505 0.049 -0.019 0.508 sum -3.207 20.205 2.668 20.632 Atomic orbital electron populations 1.22734 0.81919 1.02846 0.99120 1.88169 1.18855 1.26107 1.95098 1.23073 0.94842 0.86198 0.99690 1.22356 0.91924 1.00661 0.89838 1.48127 1.58368 1.10805 1.13437 1.19477 0.97604 0.71190 0.98825 1.21448 0.98549 0.91913 1.44554 0.92660 1.24883 0.96592 0.97196 0.95244 1.69944 1.30171 1.06285 1.46839 0.86540 0.83941 0.79001 0.78206 1.20698 1.21139 1.19916 1.17827 0.79276 0.84400 0.85311 1.90757 1.52174 1.73273 1.23775 1.21134 0.95500 0.96527 0.98501 1.22001 1.00538 0.93223 0.96366 1.20937 0.96095 0.94897 0.99134 1.19879 1.00405 0.91817 1.03919 1.18248 0.74287 0.87665 0.74171 1.93168 1.64048 1.88685 1.69832 1.93234 1.40609 1.96553 1.85230 1.93222 1.96085 1.81216 1.45209 1.21089 0.99584 0.93240 0.98404 1.18204 0.88621 0.88266 0.93330 1.84749 1.49620 1.71818 1.22482 0.94628 0.94494 0.89564 0.92593 0.93398 0.89165 0.87573 0.92271 0.94349 0.92858 0.82149 0.83731 0.83842 0.73869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.36 -6.08 8.52 -35.23 -0.30 -6.38 16 3 C 0.04 0.53 5.21 37.16 0.19 0.72 16 4 C 0.08 1.19 5.38 -4.04 -0.02 1.17 16 5 N -0.58 -12.10 2.49 -176.29 -0.44 -12.54 16 6 C 0.25 6.49 4.96 -5.19 -0.03 6.47 16 7 C -0.53 -15.15 9.35 -34.44 -0.32 -15.47 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 11 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.55 11.30 7.25 -12.47 -0.09 11.21 16 16 O -0.52 -12.76 15.50 -13.02 -0.20 -12.96 16 17 C -0.11 -1.76 5.54 -104.85 -0.58 -2.34 16 18 C -0.10 -1.21 7.43 -39.20 -0.29 -1.50 16 19 C -0.09 -0.91 9.41 -39.64 -0.37 -1.28 16 20 C -0.16 -1.67 5.38 -104.57 -0.56 -2.24 16 21 C 0.51 5.05 3.31 36.01 0.12 5.16 16 22 F -0.18 -1.66 15.95 2.25 0.04 -1.62 16 23 F -0.17 -1.85 17.23 2.25 0.04 -1.81 16 24 F -0.18 -1.78 17.23 2.25 0.04 -1.74 16 25 C -0.10 -1.20 9.51 -39.47 -0.38 -1.58 16 26 C 0.16 2.34 6.68 -38.69 -0.26 2.09 16 27 O -0.48 -7.33 12.09 -36.97 -0.45 -7.77 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.59 7.36 -51.93 -0.38 0.21 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.11 1.34 3.82 -52.32 -0.20 1.14 16 35 H 0.06 1.60 6.10 -51.93 -0.32 1.28 16 36 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.16 1.65 3.30 -52.48 -0.17 1.47 16 39 H 0.14 1.03 7.13 -52.49 -0.37 0.65 16 40 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 41 H 0.40 4.68 9.06 45.56 0.41 5.09 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -35.24 358.18 -5.24 -40.48 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.50 Total: 2.14 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -1.57 Total: 5.64 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.30 Total: -38.61 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.95 Total: -27.12 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.11 Total: -5.18 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.24 -5.24 -40.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611453887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.992 kcal (2) G-P(sol) polarization free energy of solvation -35.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds