Wall clock time and date at job start Wed Apr 1 2020 04:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99891 * 2 1 4 4 C 1.53006 * 109.47098 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47095 * 64.99481 * 4 3 2 6 6 C 1.46501 * 119.99975 * 282.83490 * 5 4 3 7 7 C 1.50698 * 109.46979 * 264.96670 * 6 5 4 8 8 H 1.07995 * 120.00287 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99776 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00131 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00230 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46845 * 90.00007 * 11 9 7 13 13 H 1.48494 * 109.47688 * 210.00408 * 11 9 7 14 14 H 1.48503 * 109.46934 * 330.00373 * 11 9 7 15 15 C 1.34773 * 119.99464 * 102.83981 * 5 4 3 16 16 O 1.21598 * 119.99397 * 186.97915 * 15 5 4 17 17 C 1.47531 * 120.00559 * 6.97874 * 15 5 4 18 18 C 1.39710 * 120.19223 * 326.67918 * 17 15 5 19 19 C 1.37781 * 119.90826 * 179.97438 * 18 17 15 20 20 C 1.38544 * 120.30492 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.80943 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.46728 * 0.02562 * 21 20 19 23 23 F 1.39898 * 109.47037 * 120.00146 * 21 20 19 24 24 F 1.39892 * 109.47087 * 240.00086 * 21 20 19 25 25 C 1.38057 * 120.38755 * 0.02562 * 20 19 18 26 26 C 1.38709 * 120.08425 * 359.97438 * 25 20 19 27 27 O 1.35655 * 120.15228 * 180.27764 * 26 25 20 28 28 H 1.08997 * 109.47142 * 300.00031 * 1 2 3 29 29 H 1.09000 * 109.46956 * 60.00755 * 1 2 3 30 30 H 1.09003 * 109.46779 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47715 * 59.99333 * 3 2 1 32 32 H 1.08999 * 109.47066 * 299.99642 * 3 2 1 33 33 H 1.08999 * 109.46861 * 304.99553 * 4 3 2 34 34 H 1.08994 * 109.46742 * 184.99744 * 4 3 2 35 35 H 1.08999 * 109.47287 * 24.96817 * 6 5 4 36 36 H 1.09003 * 109.46645 * 144.97161 * 6 5 4 37 37 H 0.96999 * 119.99952 * 179.97438 * 10 9 7 38 38 H 1.08003 * 120.04375 * 0.02562 * 18 17 15 39 39 H 1.08000 * 119.84831 * 180.02562 * 19 18 17 40 40 H 1.08001 * 119.95968 * 180.02562 * 25 20 19 41 41 H 0.96704 * 113.99910 * 269.72957 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 3.8395 -0.8821 -1.4410 7 6 5.1328 -1.5610 -1.0702 8 1 5.9721 -0.9738 -0.7280 9 6 5.2441 -2.9319 -1.1667 10 7 4.2218 -3.6470 -1.5829 11 14 6.8474 -3.7734 -0.7077 12 1 6.8262 -4.1256 0.7348 13 1 7.0076 -5.0084 -1.5165 14 1 7.9830 -2.8550 -0.9764 15 6 4.5061 1.3244 -2.2312 16 8 4.7539 0.8333 -3.3156 17 6 4.7860 2.7521 -1.9866 18 6 3.9616 3.4943 -1.1373 19 6 4.2287 4.8272 -0.9127 20 6 5.3117 5.4361 -1.5257 21 6 5.5932 6.8948 -1.2725 22 9 4.6336 7.4092 -0.3941 23 9 6.8649 7.0328 -0.7060 24 9 5.5428 7.5962 -2.4818 25 6 6.1339 4.7147 -2.3680 26 6 5.8799 3.3719 -2.6056 27 8 6.6902 2.6604 -3.4286 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8515 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.0370 -1.2573 -0.8058 36 1 3.6052 -1.0921 -2.4847 37 1 4.3003 -4.6114 -1.6512 38 1 3.1164 3.0237 -0.6570 39 1 3.5910 5.3999 -0.2557 40 1 6.9765 5.1962 -2.8420 41 1 6.4145 2.6687 -4.3555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611453887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:01 Heat of formation + Delta-G solvation = -237.033033 kcal Electronic energy + Delta-G solvation = -31358.143478 eV Core-core repulsion = 26403.202494 eV Total energy + Delta-G solvation = -4954.940984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.19812 -48.70098 -48.66139 -41.90272 -39.88061 -38.82548 -38.03242 -36.53991 -34.98187 -33.31878 -31.49744 -30.88715 -29.31465 -27.52695 -27.12943 -25.09400 -24.24797 -23.90039 -23.20387 -20.88229 -19.96290 -19.51416 -19.48491 -18.72042 -18.42698 -18.23345 -17.66914 -17.28953 -16.82744 -16.70497 -16.23237 -16.11081 -15.99760 -15.56980 -15.54645 -15.31512 -15.27247 -15.08235 -14.98451 -14.80128 -14.76244 -14.33976 -14.24693 -13.64215 -13.53502 -13.31331 -13.08098 -13.07090 -13.02297 -12.75994 -12.57865 -12.46741 -12.19331 -11.95331 -11.81890 -11.69740 -10.80163 -10.63419 -10.49051 -10.32584 -9.96339 -9.45732 -8.19711 -6.33387 -0.64963 -0.04559 1.34832 1.37939 1.48041 1.53141 1.63582 2.08034 2.39907 2.43014 2.59715 2.87610 2.89980 3.10535 3.17990 3.35942 3.42185 3.62466 3.87612 4.03854 4.07950 4.20059 4.24601 4.31955 4.44270 4.55023 4.58708 4.62501 4.78741 4.86067 4.90370 4.94506 4.97036 5.25305 5.31941 5.35527 5.54083 5.85728 6.10105 6.35030 6.63892 6.68310 6.76520 7.23580 7.39667 8.87363 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.003407 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.774529 B = 8216.316339 C = 9652.503856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.039 3.961 4 C 0.069 3.931 5 N -0.585 5.585 6 C 0.269 3.731 7 C -0.545 4.545 8 H 0.045 0.955 9 C 0.011 3.989 10 N -0.925 5.925 11 Si 0.963 3.037 12 H -0.263 1.263 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.538 3.462 16 O -0.578 6.578 17 C -0.138 4.138 18 C -0.094 4.094 19 C -0.072 4.072 20 C -0.152 4.152 21 C 0.519 3.481 22 F -0.169 7.169 23 F -0.178 7.178 24 F -0.176 7.176 25 C -0.096 4.096 26 C 0.146 3.854 27 O -0.499 6.499 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.049 0.951 36 H -0.011 1.011 37 H 0.266 0.734 38 H 0.178 0.822 39 H 0.184 0.816 40 H 0.162 0.838 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 23.814 4.889 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.038 4.038 4 C -0.053 4.053 5 N -0.315 5.315 6 C 0.149 3.851 7 C -0.583 4.583 8 H 0.064 0.936 9 C -0.188 4.188 10 N -0.564 5.564 11 Si 0.788 3.212 12 H -0.188 1.188 13 H -0.203 1.203 14 H -0.202 1.202 15 C 0.327 3.673 16 O -0.459 6.459 17 C -0.142 4.142 18 C -0.111 4.111 19 C -0.090 4.090 20 C -0.153 4.153 21 C 0.465 3.535 22 F -0.150 7.150 23 F -0.159 7.159 24 F -0.157 7.157 25 C -0.115 4.115 26 C 0.100 3.900 27 O -0.312 6.312 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.067 0.933 36 H 0.007 0.993 37 H 0.075 0.925 38 H 0.195 0.805 39 H 0.202 0.798 40 H 0.179 0.821 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -3.871 23.092 4.811 23.903 hybrid contribution 0.504 -0.739 -0.679 1.123 sum -3.367 22.353 4.132 22.980 Atomic orbital electron populations 1.22870 0.79977 1.03048 1.00993 1.88090 1.21201 1.28402 1.95524 1.23200 0.92614 0.85524 1.02432 1.22769 0.94256 1.01606 0.86653 1.48057 1.58794 1.08981 1.15632 1.18807 0.96254 0.74807 0.95281 1.21716 0.99176 0.92587 1.44838 0.93643 1.25776 1.00195 0.97881 0.94963 1.70061 1.32206 1.06714 1.47458 0.85485 0.79182 0.77730 0.78818 1.18796 1.20343 1.20176 1.18618 0.77838 0.86575 0.84310 1.90704 1.54206 1.75080 1.25903 1.20790 0.97973 0.93608 1.01794 1.22077 0.99972 0.93819 0.95263 1.21300 0.95604 0.93893 0.98208 1.20083 1.00053 0.92300 1.02896 1.18024 0.74277 0.87015 0.74222 1.93189 1.63709 1.88519 1.69558 1.93239 1.40882 1.96513 1.85270 1.93233 1.96076 1.81136 1.45302 1.21164 1.00157 0.91834 0.98308 1.18405 0.88702 0.89329 0.93593 1.84699 1.50372 1.72602 1.23551 0.91514 0.93682 0.90411 0.87688 0.92400 0.90657 0.84062 0.93310 0.99325 0.92489 0.80515 0.79840 0.82079 0.72764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -13.74 8.52 -148.98 -1.27 -15.01 16 3 C 0.04 0.96 5.21 71.98 0.37 1.34 16 4 C 0.07 2.10 5.38 86.38 0.46 2.57 16 5 N -0.59 -25.52 2.49 -829.91 -2.07 -27.59 16 6 C 0.27 15.05 4.96 85.63 0.42 15.47 16 7 C -0.54 -32.80 9.35 25.60 0.24 -32.56 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.01 0.65 5.46 84.65 0.46 1.11 16 10 N -0.92 -57.43 13.29 21.45 0.28 -57.15 16 11 Si 0.96 46.63 29.54 68.60 2.03 48.65 16 12 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 15 C 0.54 23.27 7.25 86.69 0.63 23.90 16 16 O -0.58 -30.30 15.50 13.48 0.21 -30.09 16 17 C -0.14 -4.25 5.54 -20.01 -0.11 -4.36 16 18 C -0.09 -1.92 7.43 22.52 0.17 -1.75 16 19 C -0.07 -1.09 9.41 22.23 0.21 -0.88 16 20 C -0.15 -2.64 5.38 -19.83 -0.11 -2.75 16 21 C 0.52 8.25 3.31 71.24 0.24 8.49 16 22 F -0.17 -2.40 15.95 44.97 0.72 -1.69 16 23 F -0.18 -3.16 17.23 44.97 0.77 -2.39 16 24 F -0.18 -2.98 17.23 44.97 0.77 -2.20 16 25 C -0.10 -2.01 9.51 22.34 0.21 -1.79 16 26 C 0.15 4.16 6.68 22.84 0.15 4.32 16 27 O -0.50 -16.00 12.09 -72.20 -0.87 -16.87 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.30 7.36 -2.39 -0.02 1.28 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.14 3.23 3.82 -2.76 -0.01 3.22 16 35 H 0.05 2.80 6.10 -2.39 -0.01 2.79 16 36 H -0.01 -0.74 7.49 -2.39 -0.02 -0.75 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.18 3.00 3.30 -2.91 -0.01 2.99 16 39 H 0.18 1.42 7.13 -2.91 -0.02 1.40 16 40 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 41 H 0.41 10.38 9.06 -74.05 -0.67 9.71 16 Total: -1.00 -82.44 358.18 5.62 -76.82 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.44 Total: 12.53 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 4.60 Total: 14.99 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -1.79 Total: -84.74 kcal Atomic # 8 Polarization: -60.04 SS G_CDS: -1.93 Total: -61.98 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 2.27 Total: -6.28 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -82.44 5.62 -76.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611453887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.217 kcal (2) G-P(sol) polarization free energy of solvation -82.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds