Wall clock time and date at job start Wed Apr 1 2020 04:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 119.99749 * 2 1 4 4 C 1.40044 * 120.00127 * 180.02562 * 2 1 3 5 5 C 1.39408 * 120.40714 * 359.97438 * 4 2 1 6 6 C 1.38286 * 118.44144 * 180.02562 * 5 4 2 7 7 C 1.39086 * 119.17456 * 359.97438 * 6 5 4 8 8 N 1.39314 * 119.62402 * 180.02562 * 7 6 5 9 9 S 1.65596 * 119.99860 * 180.02562 * 8 7 6 10 10 O 1.42102 * 106.40628 * 178.54122 * 9 8 7 11 11 O 1.42107 * 106.40137 * 311.46262 * 9 8 7 12 12 C 1.76206 * 107.22051 * 65.00074 * 9 8 7 13 13 C 1.38655 * 119.87655 * 269.73033 * 12 9 8 14 14 C 1.38605 * 120.50207 * 179.71955 * 13 12 9 15 15 C 1.37640 * 120.24721 * 0.55004 * 14 13 12 16 16 C 1.40694 * 119.74475 * 359.72973 * 15 14 13 17 17 C 1.41398 * 120.24572 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99788 * 150.21561 * 17 16 15 19 19 C 1.39939 * 119.99973 * 330.21451 * 17 16 15 20 20 N 1.30825 * 119.99948 * 161.72756 * 19 17 16 21 21 Si 1.86805 * 119.99960 * 341.72953 * 19 17 16 22 22 H 1.48501 * 109.47233 * 95.41290 * 21 19 17 23 23 H 1.48503 * 109.47146 * 215.41025 * 21 19 17 24 24 H 1.48498 * 109.46939 * 335.41103 * 21 19 17 25 25 C 1.37593 * 119.87565 * 89.99962 * 12 9 8 26 26 N 1.32319 * 120.74838 * 0.02562 * 7 6 5 27 27 C 1.32003 * 121.69413 * 359.69530 * 26 7 6 28 28 H 1.09002 * 109.47576 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46824 * 239.99311 * 1 2 3 30 30 H 1.09000 * 109.47455 * 120.00058 * 1 2 3 31 31 H 1.08999 * 109.46824 * 90.00421 * 3 2 1 32 32 H 1.09000 * 109.47071 * 209.99890 * 3 2 1 33 33 H 1.08996 * 109.47328 * 330.00662 * 3 2 1 34 34 H 1.07997 * 120.77874 * 359.97438 * 5 4 2 35 35 H 1.07998 * 120.41000 * 179.97438 * 6 5 4 36 36 H 0.96999 * 120.00214 * 0.02562 * 8 7 6 37 37 H 1.08003 * 119.74588 * 359.97438 * 13 12 9 38 38 H 1.08001 * 119.88174 * 180.25467 * 14 13 12 39 39 H 1.08002 * 120.12742 * 179.74646 * 15 14 13 40 40 H 0.97008 * 119.99497 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.12365 * 359.97438 * 25 12 9 42 42 H 1.08003 * 119.62033 * 180.29153 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1652 -1.2128 -0.0005 5 6 1.4768 -2.4250 -0.0005 6 6 2.2089 -3.5982 -0.0005 7 6 3.5981 -3.5304 -0.0011 8 7 4.3449 -4.7065 -0.0016 9 16 5.9994 -4.6366 -0.0016 10 8 6.4579 -5.9812 0.0324 11 8 6.3622 -3.7174 -1.0228 12 6 6.4906 -3.9047 1.5241 13 6 6.6426 -2.5294 1.6130 14 6 7.0229 -1.9394 2.8082 15 6 7.2649 -2.7160 3.9185 16 6 7.1195 -4.1131 3.8384 17 6 7.3649 -4.9209 4.9727 18 1 6.8334 -5.8528 5.0971 19 6 8.2965 -4.5129 5.9340 20 7 8.2771 -5.0429 7.1299 21 14 9.5675 -3.2114 5.5095 22 1 9.0771 -1.8795 5.9462 23 1 10.8436 -3.5209 6.2033 24 1 9.7924 -3.1993 4.0417 25 6 6.7273 -4.7005 2.6212 26 7 4.2184 -2.3617 -0.0011 27 6 3.5514 -1.2225 -0.0066 28 1 -0.3634 1.0277 0.0005 29 1 -0.3633 -0.5140 0.8900 30 1 -0.3634 -0.5138 -0.8900 31 1 2.3791 1.5834 1.0277 32 1 3.1498 1.1385 -0.5138 33 1 1.6083 2.0285 -0.5137 34 1 0.3970 -2.4474 0.0003 35 1 1.7082 -4.5551 -0.0001 36 1 3.8958 -5.5663 -0.0020 37 1 6.4594 -1.9128 0.7454 38 1 7.1343 -0.8668 2.8673 39 1 7.5651 -2.2546 4.8478 40 1 8.9227 -4.7597 7.7963 41 1 6.6121 -5.7719 2.5486 42 1 4.0920 -0.2875 -0.0111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619569642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:25 Heat of formation + Delta-G solvation = 4.308490 kcal Electronic energy + Delta-G solvation = -28050.620070 eV Core-core repulsion = 24123.046802 eV Total energy + Delta-G solvation = -3927.573268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.44142 -37.82522 -37.35206 -36.61698 -35.32550 -34.45601 -33.68232 -32.33769 -30.60540 -30.07758 -29.31781 -28.49622 -25.26965 -24.89909 -23.52392 -22.26777 -21.60271 -20.81346 -19.28333 -18.33532 -18.00103 -17.21770 -16.99141 -16.20202 -15.98694 -15.42390 -15.23982 -15.03999 -14.68989 -14.47226 -14.34339 -14.05248 -13.71638 -13.44836 -13.16612 -13.06276 -12.87920 -12.80293 -12.37547 -12.15733 -12.04108 -11.78410 -11.72482 -11.64556 -11.51872 -11.48112 -11.37169 -10.93432 -10.71326 -10.26422 -10.08087 -9.86575 -9.66016 -9.42558 -9.32409 -9.14357 -8.18629 -7.75474 -7.23184 -6.99977 -4.54616 0.87800 1.23073 1.46178 2.00865 2.53109 2.86876 3.04695 3.16338 3.25043 3.29276 3.85953 3.92290 4.17377 4.27929 4.51664 4.68849 4.73831 4.78539 4.88056 5.04414 5.06756 5.13288 5.25193 5.31675 5.37153 5.46451 5.49288 5.64599 5.86514 5.92890 6.13994 6.20384 6.31709 6.36989 6.55097 6.69828 6.91211 6.95858 6.97317 7.18594 7.19942 7.33667 7.51565 7.70112 7.87844 8.06124 8.26825 8.52155 8.71053 10.02593 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.003622 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.657726 B = 7728.104489 C = 8859.349351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.637 5.637 3 C 0.093 3.907 4 C 0.128 3.872 5 C -0.119 4.119 6 C -0.153 4.153 7 C 0.334 3.666 8 N -1.038 6.038 9 S 2.686 3.314 10 O -0.967 6.967 11 O -0.946 6.946 12 C -0.619 4.619 13 C -0.122 4.122 14 C -0.104 4.104 15 C -0.190 4.190 16 C 0.071 3.929 17 C -0.449 4.449 18 H 0.093 0.907 19 C 0.085 3.915 20 N -0.807 5.807 21 Si 0.905 3.095 22 H -0.269 1.269 23 H -0.287 1.287 24 H -0.243 1.243 25 C -0.108 4.108 26 N -0.469 5.469 27 C 0.081 3.919 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.428 0.572 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.286 0.714 41 H 0.117 0.883 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.182 9.487 -12.046 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.351 5.351 3 C -0.050 4.050 4 C 0.025 3.975 5 C -0.150 4.150 6 C -0.179 4.179 7 C 0.101 3.899 8 N -0.785 5.785 9 S 2.783 3.217 10 O -0.958 6.958 11 O -0.935 6.935 12 C -0.711 4.711 13 C -0.143 4.143 14 C -0.123 4.123 15 C -0.210 4.210 16 C 0.067 3.933 17 C -0.478 4.478 18 H 0.111 0.889 19 C -0.134 4.134 20 N -0.431 5.431 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.214 1.214 24 H -0.166 1.166 25 C -0.129 4.129 26 N -0.182 5.182 27 C -0.082 4.082 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.264 0.736 37 H 0.144 0.856 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.135 0.865 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.603 9.349 -12.485 20.696 hybrid contribution -0.689 0.419 0.959 1.253 sum -14.292 9.768 -11.526 20.798 Atomic orbital electron populations 1.21565 0.79580 1.02358 1.00987 1.46160 1.04690 1.02680 1.81614 1.21682 0.97303 0.84643 1.01393 1.18692 0.92536 0.86523 0.99759 1.20850 0.99991 0.90254 1.03871 1.21294 0.92219 0.99348 1.05007 1.17661 0.88386 0.85430 0.98453 1.53556 1.27432 1.11165 1.86326 1.01962 0.71351 0.73202 0.75227 1.93574 1.77881 1.36235 1.88081 1.93538 1.80087 1.64575 1.55343 1.29702 1.18256 1.04579 1.18577 1.20285 1.04009 0.92024 0.97941 1.20732 1.00137 0.97977 0.93470 1.21329 1.07573 0.94224 0.97869 1.17751 0.91554 0.91726 0.92263 1.19454 1.20258 1.07066 1.01020 0.88877 1.26114 0.98065 0.95907 0.93339 1.69688 1.32172 1.38267 1.02952 0.86408 0.79038 0.80008 0.81479 1.19555 1.21439 1.16625 1.20850 1.03045 0.97711 0.91310 1.67017 1.39873 0.96996 1.14343 1.21973 0.89058 0.95389 1.01761 0.90929 0.92922 0.93021 0.93201 0.91144 0.91571 0.84787 0.84571 0.73608 0.85644 0.88084 0.87789 0.90381 0.86483 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 9.43 59.84 0.56 1.17 16 2 N -0.64 -5.62 3.42 -187.36 -0.64 -6.26 16 3 C 0.09 0.64 10.18 59.85 0.61 1.25 16 4 C 0.13 1.46 6.57 -83.53 -0.55 0.91 16 5 C -0.12 -1.25 9.41 -39.13 -0.37 -1.62 16 6 C -0.15 -1.78 9.93 -39.25 -0.39 -2.17 16 7 C 0.33 5.02 7.34 -154.80 -1.14 3.88 16 8 N -1.04 -15.49 5.86 31.17 0.18 -15.30 16 9 S 2.69 51.29 5.39 -107.50 -0.58 50.71 16 10 O -0.97 -20.09 17.27 -57.17 -0.99 -21.08 16 11 O -0.95 -19.70 16.13 -57.17 -0.92 -20.62 16 12 C -0.62 -13.51 5.77 -39.66 -0.23 -13.74 16 13 C -0.12 -2.60 8.42 -39.29 -0.33 -2.93 16 14 C -0.10 -2.25 10.02 -39.66 -0.40 -2.65 16 15 C -0.19 -4.57 7.18 -38.87 -0.28 -4.85 16 16 C 0.07 1.81 5.10 -106.83 -0.55 1.27 16 17 C -0.45 -12.17 9.57 -37.74 -0.36 -12.53 16 18 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 19 C 0.08 2.22 5.40 -17.34 -0.09 2.13 16 20 N -0.81 -21.44 13.93 55.55 0.77 -20.67 16 21 Si 0.90 20.73 24.52 -169.99 -4.17 16.56 16 22 H -0.27 -5.91 6.71 56.52 0.38 -5.53 16 23 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.24 -5.76 6.86 56.52 0.39 -5.37 16 25 C -0.11 -2.58 9.26 -38.88 -0.36 -2.94 16 26 N -0.47 -7.63 6.28 -12.23 -0.08 -7.71 16 27 C 0.08 1.08 10.38 -17.33 -0.18 0.90 16 28 H 0.07 0.31 7.79 -51.93 -0.40 -0.09 16 29 H 0.05 0.32 7.99 -51.93 -0.41 -0.10 16 30 H 0.05 0.29 7.99 -51.93 -0.41 -0.13 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.48 6.21 -51.93 -0.32 0.16 16 33 H 0.07 0.32 7.92 -51.93 -0.41 -0.09 16 34 H 0.13 1.04 6.88 -52.49 -0.36 0.68 16 35 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.43 4.79 8.82 -34.47 -0.30 4.49 16 37 H 0.13 2.50 6.55 -52.48 -0.34 2.16 16 38 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 39 H 0.10 2.45 4.73 -52.49 -0.25 2.21 16 40 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 41 H 0.12 2.67 7.60 -52.48 -0.40 2.27 16 42 H 0.16 1.79 6.14 -52.48 -0.32 1.47 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -34.03 356.68 -9.90 -43.93 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.81 Total: 7.01 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -4.04 Total: -31.94 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.24 Total: -49.94 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -1.91 Total: -41.71 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.17 Total: 16.56 kcal Atomic # 16 Polarization: 51.29 SS G_CDS: -0.58 Total: 50.71 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.03 -9.90 -43.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619569642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.237 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds