Wall clock time and date at job start Wed Apr 1 2020 04:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 119.99749 * 2 1 4 4 C 1.40044 * 120.00127 * 180.02562 * 2 1 3 5 5 C 1.39408 * 120.40714 * 359.97438 * 4 2 1 6 6 C 1.38286 * 118.44144 * 180.02562 * 5 4 2 7 7 C 1.39086 * 119.17456 * 359.97438 * 6 5 4 8 8 N 1.39314 * 119.62402 * 180.02562 * 7 6 5 9 9 S 1.65596 * 119.99860 * 180.02562 * 8 7 6 10 10 O 1.42102 * 106.40628 * 178.54122 * 9 8 7 11 11 O 1.42107 * 106.40137 * 311.46262 * 9 8 7 12 12 C 1.76206 * 107.22051 * 65.00074 * 9 8 7 13 13 C 1.38655 * 119.87655 * 269.73033 * 12 9 8 14 14 C 1.38605 * 120.50207 * 179.71955 * 13 12 9 15 15 C 1.37640 * 120.24721 * 0.55004 * 14 13 12 16 16 C 1.40694 * 119.74475 * 359.72973 * 15 14 13 17 17 C 1.41398 * 120.24572 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99788 * 150.21561 * 17 16 15 19 19 C 1.39939 * 119.99973 * 330.21451 * 17 16 15 20 20 N 1.30825 * 119.99948 * 161.72756 * 19 17 16 21 21 Si 1.86805 * 119.99960 * 341.72953 * 19 17 16 22 22 H 1.48501 * 109.47233 * 95.41290 * 21 19 17 23 23 H 1.48503 * 109.47146 * 215.41025 * 21 19 17 24 24 H 1.48498 * 109.46939 * 335.41103 * 21 19 17 25 25 C 1.37593 * 119.87565 * 89.99962 * 12 9 8 26 26 N 1.32319 * 120.74838 * 0.02562 * 7 6 5 27 27 C 1.32003 * 121.69413 * 359.69530 * 26 7 6 28 28 H 1.09002 * 109.47576 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46824 * 239.99311 * 1 2 3 30 30 H 1.09000 * 109.47455 * 120.00058 * 1 2 3 31 31 H 1.08999 * 109.46824 * 90.00421 * 3 2 1 32 32 H 1.09000 * 109.47071 * 209.99890 * 3 2 1 33 33 H 1.08996 * 109.47328 * 330.00662 * 3 2 1 34 34 H 1.07997 * 120.77874 * 359.97438 * 5 4 2 35 35 H 1.07998 * 120.41000 * 179.97438 * 6 5 4 36 36 H 0.96999 * 120.00214 * 0.02562 * 8 7 6 37 37 H 1.08003 * 119.74588 * 359.97438 * 13 12 9 38 38 H 1.08001 * 119.88174 * 180.25467 * 14 13 12 39 39 H 1.08002 * 120.12742 * 179.74646 * 15 14 13 40 40 H 0.97008 * 119.99497 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.12365 * 359.97438 * 25 12 9 42 42 H 1.08003 * 119.62033 * 180.29153 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1652 -1.2128 -0.0005 5 6 1.4768 -2.4250 -0.0005 6 6 2.2089 -3.5982 -0.0005 7 6 3.5981 -3.5304 -0.0011 8 7 4.3449 -4.7065 -0.0016 9 16 5.9994 -4.6366 -0.0016 10 8 6.4579 -5.9812 0.0324 11 8 6.3622 -3.7174 -1.0228 12 6 6.4906 -3.9047 1.5241 13 6 6.6426 -2.5294 1.6130 14 6 7.0229 -1.9394 2.8082 15 6 7.2649 -2.7160 3.9185 16 6 7.1195 -4.1131 3.8384 17 6 7.3649 -4.9209 4.9727 18 1 6.8334 -5.8528 5.0971 19 6 8.2965 -4.5129 5.9340 20 7 8.2771 -5.0429 7.1299 21 14 9.5675 -3.2114 5.5095 22 1 9.0771 -1.8795 5.9462 23 1 10.8436 -3.5209 6.2033 24 1 9.7924 -3.1993 4.0417 25 6 6.7273 -4.7005 2.6212 26 7 4.2184 -2.3617 -0.0011 27 6 3.5514 -1.2225 -0.0066 28 1 -0.3634 1.0277 0.0005 29 1 -0.3633 -0.5140 0.8900 30 1 -0.3634 -0.5138 -0.8900 31 1 2.3791 1.5834 1.0277 32 1 3.1498 1.1385 -0.5138 33 1 1.6083 2.0285 -0.5137 34 1 0.3970 -2.4474 0.0003 35 1 1.7082 -4.5551 -0.0001 36 1 3.8958 -5.5663 -0.0020 37 1 6.4594 -1.9128 0.7454 38 1 7.1343 -0.8668 2.8673 39 1 7.5651 -2.2546 4.8478 40 1 8.9227 -4.7597 7.7963 41 1 6.6121 -5.7719 2.5486 42 1 4.0920 -0.2875 -0.0111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619569642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:24 Heat of formation + Delta-G solvation = -19.232031 kcal Electronic energy + Delta-G solvation = -28051.640863 eV Core-core repulsion = 24123.046802 eV Total energy + Delta-G solvation = -3928.594061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36132 -39.65614 -38.38323 -37.98870 -36.93198 -35.61122 -35.48937 -33.23256 -32.47910 -31.87684 -30.15885 -29.08686 -27.19478 -25.67791 -24.48286 -23.99828 -22.66023 -22.43428 -20.73044 -19.84560 -19.22801 -18.60181 -18.01082 -17.84152 -17.05215 -16.95923 -16.67573 -16.36865 -16.03529 -15.62626 -15.40927 -15.07535 -14.97331 -14.83370 -14.67230 -14.31571 -14.01249 -13.95620 -13.48601 -13.36287 -13.35190 -13.24022 -13.12094 -13.01417 -12.92993 -12.86441 -12.59621 -12.51872 -12.48797 -11.99989 -11.74050 -11.52171 -11.08097 -10.91973 -10.43555 -10.17303 -9.97201 -9.63455 -8.95103 -8.04748 -6.56979 -0.62215 0.21201 0.33620 0.52303 0.69385 1.20487 1.35624 1.43197 1.87082 2.06408 2.26494 2.42436 2.66268 2.98510 3.25312 3.42597 3.46979 3.94689 3.98957 4.09044 4.19752 4.30172 4.36177 4.45678 4.53423 4.57562 4.63056 4.76622 4.82552 4.86280 4.89029 4.97325 4.98528 5.08694 5.09792 5.25286 5.36570 5.47673 5.53345 5.67730 5.77152 5.92895 6.01883 6.25603 6.32446 6.42402 6.60658 6.72044 7.09005 8.13551 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.003622 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.657726 B = 7728.104489 C = 8859.349351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.637 5.637 3 C 0.086 3.914 4 C 0.136 3.864 5 C -0.122 4.122 6 C -0.141 4.141 7 C 0.292 3.708 8 N -1.025 6.025 9 S 2.716 3.284 10 O -0.989 6.989 11 O -0.961 6.961 12 C -0.628 4.628 13 C -0.107 4.107 14 C -0.105 4.105 15 C -0.197 4.197 16 C 0.052 3.948 17 C -0.487 4.487 18 H 0.060 0.940 19 C 0.050 3.950 20 N -0.845 5.845 21 Si 0.955 3.045 22 H -0.249 1.249 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.126 4.126 26 N -0.504 5.504 27 C 0.053 3.947 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.443 0.557 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.108 0.892 40 H 0.295 0.705 41 H 0.114 0.886 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.120 12.170 -13.642 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.350 5.350 3 C -0.057 4.057 4 C 0.031 3.969 5 C -0.152 4.152 6 C -0.166 4.166 7 C 0.059 3.941 8 N -0.778 5.778 9 S 2.809 3.191 10 O -0.979 6.979 11 O -0.951 6.951 12 C -0.718 4.718 13 C -0.128 4.128 14 C -0.124 4.124 15 C -0.217 4.217 16 C 0.049 3.951 17 C -0.517 4.517 18 H 0.079 0.921 19 C -0.165 4.165 20 N -0.471 5.471 21 Si 0.777 3.223 22 H -0.173 1.173 23 H -0.199 1.199 24 H -0.181 1.181 25 C -0.147 4.147 26 N -0.218 5.218 27 C -0.109 4.109 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.183 0.817 35 H 0.184 0.816 36 H 0.283 0.717 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.132 0.868 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.569 12.071 -14.050 24.197 hybrid contribution -0.362 -0.268 1.241 1.320 sum -15.931 11.803 -12.809 23.604 Atomic orbital electron populations 1.21789 0.77799 1.04017 1.01535 1.46492 1.05940 1.02366 1.80187 1.21845 0.97679 0.84408 1.01751 1.18846 0.92187 0.87981 0.97910 1.21231 1.01478 0.89479 1.03022 1.21613 0.90820 1.01259 1.02884 1.17952 0.89640 0.84893 1.01603 1.53023 1.25749 1.12519 1.86525 1.01030 0.72150 0.72083 0.73814 1.93541 1.79314 1.37055 1.87978 1.93512 1.81380 1.65055 1.55170 1.30196 1.17246 1.04991 1.19346 1.20673 1.01518 0.92076 0.98498 1.21162 0.98789 0.99931 0.92542 1.21496 1.07550 0.93677 0.98963 1.17901 0.92284 0.92656 0.92307 1.19435 1.22215 1.06915 1.03091 0.92145 1.26750 0.99056 0.97705 0.92970 1.69707 1.33527 1.40094 1.03763 0.85652 0.77467 0.78812 0.80336 1.17336 1.19915 1.18090 1.20906 1.04053 0.98033 0.91742 1.66840 1.41519 0.98072 1.15361 1.22199 0.90286 0.95049 1.03324 0.88907 0.92630 0.92072 0.93169 0.91361 0.89228 0.81663 0.81580 0.71712 0.83830 0.84156 0.87388 0.89421 0.86821 0.81390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 9.43 127.77 1.21 1.97 16 2 N -0.64 -9.19 3.42 -746.67 -2.55 -11.75 16 3 C 0.09 0.93 10.18 127.77 1.30 2.23 16 4 C 0.14 2.74 6.57 38.20 0.25 2.99 16 5 C -0.12 -2.16 9.41 22.56 0.21 -1.95 16 6 C -0.14 -2.89 9.93 22.48 0.22 -2.67 16 7 C 0.29 8.33 7.34 132.97 0.98 9.30 16 8 N -1.03 -29.67 5.86 -55.31 -0.32 -30.00 16 9 S 2.72 102.88 5.39 -56.49 -0.30 102.58 16 10 O -0.99 -41.34 17.27 -128.00 -2.21 -43.55 16 11 O -0.96 -39.37 16.13 -128.00 -2.07 -41.44 16 12 C -0.63 -27.37 5.77 22.22 0.13 -27.24 16 13 C -0.11 -4.44 8.42 22.46 0.19 -4.25 16 14 C -0.11 -4.36 10.02 22.22 0.22 -4.14 16 15 C -0.20 -9.38 7.18 22.73 0.16 -9.21 16 16 C 0.05 2.72 5.10 -21.29 -0.11 2.62 16 17 C -0.49 -27.81 9.57 23.46 0.22 -27.59 16 18 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 19 C 0.05 2.71 5.40 85.25 0.46 3.17 16 20 N -0.84 -46.45 13.93 21.82 0.30 -46.14 16 21 Si 0.95 42.68 24.52 68.60 1.68 44.36 16 22 H -0.25 -10.19 6.71 99.48 0.67 -9.52 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 24 H -0.26 -11.96 6.86 99.48 0.68 -11.27 16 25 C -0.13 -6.20 9.26 22.73 0.21 -5.99 16 26 N -0.50 -15.75 6.28 -192.61 -1.21 -16.96 16 27 C 0.05 1.34 10.38 84.76 0.88 2.22 16 28 H 0.09 0.42 7.79 -2.39 -0.02 0.40 16 29 H 0.06 0.46 7.99 -2.39 -0.02 0.44 16 30 H 0.06 0.43 7.99 -2.39 -0.02 0.41 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.78 6.21 -2.39 -0.01 0.77 16 33 H 0.09 0.56 7.92 -2.39 -0.02 0.54 16 34 H 0.17 1.83 6.88 -2.91 -0.02 1.81 16 35 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.44 9.45 8.82 -96.75 -0.85 8.60 16 37 H 0.14 5.45 6.55 -2.91 -0.02 5.43 16 38 H 0.14 4.66 8.06 -2.91 -0.02 4.63 16 39 H 0.11 4.98 4.73 -2.91 -0.01 4.97 16 40 H 0.30 14.51 8.30 -92.70 -0.77 13.74 16 41 H 0.11 5.48 7.60 -2.91 -0.02 5.46 16 42 H 0.17 3.57 6.14 -2.91 -0.02 3.56 16 Total: -1.00 -75.78 356.68 0.02 -75.76 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.16 Total: 25.68 kcal Atomic # 6 Polarization: -65.08 SS G_CDS: 6.54 Total: -58.54 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -3.78 Total: -104.85 kcal Atomic # 8 Polarization: -80.71 SS G_CDS: -4.27 Total: -84.99 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.68 Total: 44.36 kcal Atomic # 16 Polarization: 102.88 SS G_CDS: -0.30 Total: 102.58 kcal Total: -75.78 0.02 -75.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619569642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.529 kcal (2) G-P(sol) polarization free energy of solvation -75.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds