Wall clock time and date at job start Wed Apr 1 2020 04:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99780 * 2 1 4 4 H 1.09000 * 109.47140 * 30.01035 * 3 2 1 5 5 C 1.53008 * 109.46664 * 149.99980 * 3 2 1 6 6 N 1.46492 * 109.47414 * 300.00602 * 5 3 2 7 7 C 1.34777 * 120.00063 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99553 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00287 * 179.97438 * 7 6 5 10 10 C 1.50698 * 109.46985 * 180.02562 * 9 7 6 11 11 C 1.38301 * 119.92694 * 269.72581 * 10 9 7 12 12 C 1.38108 * 120.06883 * 179.73107 * 11 10 9 13 13 C 1.38877 * 119.92356 * 0.56583 * 12 11 10 14 14 O 1.35757 * 120.06896 * 179.68539 * 13 12 11 15 15 C 1.34823 * 117.00418 * 174.48431 * 14 13 12 16 16 H 1.08006 * 119.99915 * 5.06060 * 15 14 13 17 17 C 1.38648 * 120.00178 * 185.05505 * 15 14 13 18 18 N 1.31560 * 119.99990 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00272 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46796 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47360 * 119.99970 * 19 17 15 22 22 H 1.48502 * 109.46829 * 240.00590 * 19 17 15 23 23 C 1.38880 * 119.86730 * 359.70585 * 13 12 11 24 24 C 1.38100 * 119.93140 * 0.02562 * 23 13 12 25 25 C 1.52992 * 109.47954 * 270.00501 * 3 2 1 26 26 F 1.39907 * 109.46981 * 59.99933 * 25 3 2 27 27 F 1.39903 * 109.46919 * 300.00190 * 25 3 2 28 28 F 1.39892 * 109.47480 * 180.02562 * 25 3 2 29 29 H 1.08998 * 109.46898 * 299.99251 * 1 2 3 30 30 H 1.09001 * 109.47090 * 59.99378 * 1 2 3 31 31 H 1.08997 * 109.47034 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46480 * 60.00651 * 5 3 2 33 33 H 1.09005 * 109.46853 * 180.02562 * 5 3 2 34 34 H 0.96999 * 120.00001 * 359.97438 * 6 5 3 35 35 H 1.09004 * 109.46999 * 300.00352 * 9 7 6 36 36 H 1.08997 * 109.47061 * 60.00157 * 9 7 6 37 37 H 1.08000 * 119.96772 * 359.97438 * 11 10 9 38 38 H 1.07990 * 120.03796 * 180.27142 * 12 11 10 39 39 H 0.97007 * 119.99832 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.03859 * 179.97438 * 23 13 12 41 41 H 1.07997 * 119.96809 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5140 5 6 3.3590 1.2632 0.7213 6 7 3.1604 0.8169 2.1024 7 6 4.2163 0.7027 2.9321 8 8 5.3309 0.9698 2.5354 9 6 4.0121 0.2441 4.3531 10 6 5.3405 0.2025 5.0633 11 6 6.0953 -0.9563 5.0475 12 6 7.3157 -0.9961 5.6928 13 6 7.7793 0.1256 6.3678 14 8 8.9756 0.0877 7.0084 15 6 9.4189 1.2419 7.5460 16 1 8.7927 2.1217 7.5279 17 6 10.6787 1.2995 8.1222 18 7 11.4417 0.2280 8.1440 19 14 11.2927 2.8986 8.8677 20 1 10.2518 3.9469 8.7165 21 1 11.5821 2.6935 10.3097 22 1 12.5318 3.3263 8.1699 23 6 7.0164 1.2859 6.3865 24 6 5.7994 1.3211 5.7347 25 6 2.2176 1.7716 -1.4424 26 9 0.9843 1.8102 -2.1018 27 9 3.0715 0.8811 -2.1020 28 9 2.7871 3.0494 -1.4422 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0242 0.5694 0.2073 33 1 3.8021 2.2591 0.7217 34 1 2.2689 0.6037 2.4198 35 1 3.3473 0.9386 4.8669 36 1 3.5681 -0.7513 4.3533 37 1 5.7318 -1.8299 4.5268 38 1 7.9067 -1.8998 5.6764 39 1 12.3233 0.2685 8.5468 40 1 7.3741 2.1597 6.9110 41 1 5.2055 2.2230 5.7493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733237569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:48 Heat of formation + Delta-G solvation = -234.966304 kcal Electronic energy + Delta-G solvation = -29584.024294 eV Core-core repulsion = 24629.172930 eV Total energy + Delta-G solvation = -4954.851364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.60442 -48.16154 -48.03105 -40.02256 -39.08091 -38.58954 -36.50628 -34.96620 -32.48678 -31.87652 -30.92200 -30.10694 -27.25304 -27.13579 -25.72773 -24.87031 -22.68623 -21.93235 -21.22516 -20.17968 -19.20064 -19.01376 -18.50668 -17.94039 -17.28958 -17.09895 -16.84672 -16.18814 -15.51019 -15.41083 -15.05108 -14.87577 -14.83864 -14.55102 -14.53186 -14.44272 -14.27600 -14.19331 -14.16333 -13.70753 -13.58427 -13.42042 -13.22686 -12.77550 -12.66649 -12.50365 -12.40968 -12.01716 -11.79853 -11.47409 -11.24424 -10.83577 -10.73484 -10.63676 -10.56490 -10.38940 -9.79786 -9.31214 -9.27821 -8.78831 -8.10732 -7.12526 -6.40978 -3.99395 1.98425 2.29223 2.30339 2.57987 2.72699 2.93116 3.15039 3.16817 3.21632 3.22237 3.51549 3.69396 4.00287 4.10829 4.15397 4.57218 4.62648 4.72112 4.93671 5.00594 5.09276 5.12120 5.22991 5.28529 5.35919 5.42722 5.67191 5.76076 5.89053 6.05437 6.14485 6.26044 6.46165 6.74468 6.95576 7.09562 7.27472 7.33968 7.40807 7.49356 7.88224 8.04485 8.24299 9.04895 9.75749 10.77249 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.021911 B = 0.001847 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.582478 B =15157.742442 C =15728.171335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.351 6.351 3 C 0.039 3.961 4 H 0.114 0.886 5 C 0.122 3.878 6 N -0.734 5.734 7 C 0.511 3.489 8 O -0.515 6.515 9 C -0.077 4.077 10 C -0.172 4.172 11 C -0.059 4.059 12 C -0.191 4.191 13 C 0.157 3.843 14 O -0.179 6.179 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.233 4.233 24 C -0.056 4.056 25 C 0.435 3.565 26 F -0.182 7.182 27 F -0.170 7.170 28 F -0.176 7.176 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.401 0.599 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.269 0.731 40 H 0.126 0.874 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.969 2.301 -15.689 30.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.269 6.269 3 C -0.022 4.022 4 H 0.132 0.868 5 C -0.003 4.003 6 N -0.389 5.389 7 C 0.298 3.702 8 O -0.388 6.388 9 C -0.117 4.117 10 C -0.173 4.173 11 C -0.077 4.077 12 C -0.211 4.211 13 C 0.103 3.897 14 O -0.082 6.082 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.252 4.252 24 C -0.075 4.075 25 C 0.380 3.620 26 F -0.163 7.163 27 F -0.152 7.152 28 F -0.157 7.157 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.235 0.765 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.606 2.088 -15.876 29.357 hybrid contribution -0.406 1.075 0.040 1.150 sum -25.012 3.163 -15.835 29.772 Atomic orbital electron populations 1.23215 0.79294 1.04485 1.01339 1.88161 1.21299 1.23409 1.94018 1.23569 0.99576 0.89110 0.89977 0.86810 1.21315 0.92674 1.02960 0.83350 1.45807 1.11043 1.71289 1.10767 1.21129 0.84044 0.77120 0.87921 1.90775 1.23718 1.47391 1.76889 1.20385 0.97820 1.02797 0.90660 1.18619 0.96948 0.95570 1.06203 1.20410 0.93510 0.96552 0.97258 1.20160 0.98051 0.98230 1.04616 1.19389 0.86830 0.93253 0.90218 1.83977 1.28972 1.34765 1.60477 1.21374 1.00574 0.87985 1.36689 0.89030 1.25292 0.94973 0.99046 0.97307 1.70055 1.09793 1.28051 1.41926 0.85645 0.79071 0.80074 0.78612 1.19121 1.20193 1.20154 1.21105 0.96768 0.99575 1.07741 1.20501 0.95152 0.96131 0.95668 1.21171 0.74337 0.75660 0.90832 1.93173 1.43340 1.96214 1.83584 1.93235 1.70776 1.67966 1.83174 1.93228 1.85092 1.40478 1.96923 0.92792 0.92578 0.88148 0.89261 0.88684 0.76494 0.88924 0.88792 0.87339 0.86534 0.92120 0.85589 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 10.70 101.05 1.08 1.13 16 2 O -0.35 -2.33 10.03 -35.23 -0.35 -2.69 16 3 C 0.04 0.24 2.26 -26.73 -0.06 0.18 16 4 H 0.11 0.39 7.79 -51.93 -0.40 -0.02 16 5 C 0.12 1.06 5.12 -4.04 -0.02 1.04 16 6 N -0.73 -6.46 5.45 -60.29 -0.33 -6.78 16 7 C 0.51 6.68 7.82 -10.98 -0.09 6.60 16 8 O -0.51 -9.47 16.03 5.55 0.09 -9.38 16 9 C -0.08 -0.91 5.83 -29.03 -0.17 -1.08 16 10 C -0.17 -2.96 4.38 -104.58 -0.46 -3.41 16 11 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 12 C -0.19 -4.20 9.99 -39.39 -0.39 -4.60 16 13 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 14 O -0.18 -5.22 9.76 0.05 0.00 -5.22 16 15 C -0.39 -11.14 9.49 30.88 0.29 -10.84 16 16 H 0.09 2.43 5.20 -52.48 -0.27 2.16 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 19 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 C -0.23 -5.22 9.17 -39.39 -0.36 -5.58 16 24 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 25 C 0.44 3.38 2.85 37.15 0.11 3.49 16 26 F -0.18 -1.37 15.50 2.25 0.03 -1.34 16 27 F -0.17 -1.66 16.74 2.25 0.04 -1.62 16 28 F -0.18 -1.47 16.80 2.25 0.04 -1.44 16 29 H 0.05 0.10 8.08 -51.93 -0.42 -0.32 16 30 H 0.06 0.21 6.49 -51.93 -0.34 -0.13 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.94 7.80 -51.93 -0.41 0.54 16 33 H 0.10 0.85 7.80 -51.93 -0.41 0.45 16 34 H 0.40 2.22 8.35 -40.82 -0.34 1.88 16 35 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 41 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -35.60 367.93 -4.94 -40.54 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.55 Total: 2.85 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.19 Total: -11.38 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.43 Total: -31.77 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.26 Total: -17.29 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.11 Total: -4.40 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.60 -4.94 -40.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733237569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.422 kcal (2) G-P(sol) polarization free energy of solvation -35.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds