Wall clock time and date at job start Wed Apr 1 2020 04:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99780 * 2 1 4 4 H 1.09000 * 109.47140 * 30.01035 * 3 2 1 5 5 C 1.53008 * 109.46664 * 149.99980 * 3 2 1 6 6 N 1.46492 * 109.47414 * 300.00602 * 5 3 2 7 7 C 1.34777 * 120.00063 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99553 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00287 * 179.97438 * 7 6 5 10 10 C 1.50698 * 109.46985 * 180.02562 * 9 7 6 11 11 C 1.38301 * 119.92694 * 269.72581 * 10 9 7 12 12 C 1.38108 * 120.06883 * 179.73107 * 11 10 9 13 13 C 1.38877 * 119.92356 * 0.56583 * 12 11 10 14 14 O 1.35757 * 120.06896 * 179.68539 * 13 12 11 15 15 C 1.34823 * 117.00418 * 174.48431 * 14 13 12 16 16 H 1.08006 * 119.99915 * 5.06060 * 15 14 13 17 17 C 1.38648 * 120.00178 * 185.05505 * 15 14 13 18 18 N 1.31560 * 119.99990 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00272 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46796 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47360 * 119.99970 * 19 17 15 22 22 H 1.48502 * 109.46829 * 240.00590 * 19 17 15 23 23 C 1.38880 * 119.86730 * 359.70585 * 13 12 11 24 24 C 1.38100 * 119.93140 * 0.02562 * 23 13 12 25 25 C 1.52992 * 109.47954 * 270.00501 * 3 2 1 26 26 F 1.39907 * 109.46981 * 59.99933 * 25 3 2 27 27 F 1.39903 * 109.46919 * 300.00190 * 25 3 2 28 28 F 1.39892 * 109.47480 * 180.02562 * 25 3 2 29 29 H 1.08998 * 109.46898 * 299.99251 * 1 2 3 30 30 H 1.09001 * 109.47090 * 59.99378 * 1 2 3 31 31 H 1.08997 * 109.47034 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46480 * 60.00651 * 5 3 2 33 33 H 1.09005 * 109.46853 * 180.02562 * 5 3 2 34 34 H 0.96999 * 120.00001 * 359.97438 * 6 5 3 35 35 H 1.09004 * 109.46999 * 300.00352 * 9 7 6 36 36 H 1.08997 * 109.47061 * 60.00157 * 9 7 6 37 37 H 1.08000 * 119.96772 * 359.97438 * 11 10 9 38 38 H 1.07990 * 120.03796 * 180.27142 * 12 11 10 39 39 H 0.97007 * 119.99832 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.03859 * 179.97438 * 23 13 12 41 41 H 1.07997 * 119.96809 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5140 5 6 3.3590 1.2632 0.7213 6 7 3.1604 0.8169 2.1024 7 6 4.2163 0.7027 2.9321 8 8 5.3309 0.9698 2.5354 9 6 4.0121 0.2441 4.3531 10 6 5.3405 0.2025 5.0633 11 6 6.0953 -0.9563 5.0475 12 6 7.3157 -0.9961 5.6928 13 6 7.7793 0.1256 6.3678 14 8 8.9756 0.0877 7.0084 15 6 9.4189 1.2419 7.5460 16 1 8.7927 2.1217 7.5279 17 6 10.6787 1.2995 8.1222 18 7 11.4417 0.2280 8.1440 19 14 11.2927 2.8986 8.8677 20 1 10.2518 3.9469 8.7165 21 1 11.5821 2.6935 10.3097 22 1 12.5318 3.3263 8.1699 23 6 7.0164 1.2859 6.3865 24 6 5.7994 1.3211 5.7347 25 6 2.2176 1.7716 -1.4424 26 9 0.9843 1.8102 -2.1018 27 9 3.0715 0.8811 -2.1020 28 9 2.7871 3.0494 -1.4422 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0242 0.5694 0.2073 33 1 3.8021 2.2591 0.7217 34 1 2.2689 0.6037 2.4198 35 1 3.3473 0.9386 4.8669 36 1 3.5681 -0.7513 4.3533 37 1 5.7318 -1.8299 4.5268 38 1 7.9067 -1.8998 5.6764 39 1 12.3233 0.2685 8.5468 40 1 7.3741 2.1597 6.9110 41 1 5.2055 2.2230 5.7493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733237569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:47 Heat of formation + Delta-G solvation = -261.117262 kcal Electronic energy + Delta-G solvation = -29585.158285 eV Core-core repulsion = 24629.172930 eV Total energy + Delta-G solvation = -4955.985355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.22669 -48.76414 -48.69904 -41.12005 -40.46385 -39.42178 -38.17487 -35.82297 -34.38572 -33.07082 -31.90974 -31.73000 -28.48061 -27.48556 -27.29021 -26.15823 -23.61174 -23.31459 -22.52798 -21.38061 -19.83228 -19.79670 -19.63896 -19.13798 -18.82930 -17.99632 -17.61856 -17.13875 -16.60911 -16.33620 -16.04800 -15.98110 -15.71739 -15.59479 -15.50118 -15.41644 -15.38745 -15.13110 -15.00828 -14.86371 -14.83739 -14.57571 -14.40453 -14.25782 -13.95299 -13.57691 -13.28062 -12.96999 -12.89062 -12.71706 -12.47161 -12.38423 -12.24550 -12.21691 -12.08983 -11.15493 -11.09005 -10.92644 -10.74606 -10.16696 -9.73463 -8.87869 -8.46537 -6.14513 0.64328 0.68964 1.34395 1.41302 1.44828 1.53313 1.73049 2.09476 2.18167 2.22963 2.64108 2.80701 2.92510 3.13671 3.20560 3.54761 3.57693 3.68589 3.88967 4.08869 4.18799 4.24638 4.31926 4.44103 4.52853 4.54031 4.61281 4.64888 4.76181 4.83650 4.90146 5.11684 5.16532 5.32312 5.34952 5.59329 5.71811 5.74116 5.80641 6.04408 6.26068 6.58560 6.98206 7.34010 7.80286 8.77246 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.021911 B = 0.001847 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.582478 B =15157.742442 C =15728.171335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.369 6.369 3 C 0.052 3.948 4 H 0.151 0.849 5 C 0.119 3.881 6 N -0.709 5.709 7 C 0.513 3.487 8 O -0.578 6.578 9 C -0.075 4.075 10 C -0.146 4.146 11 C -0.058 4.058 12 C -0.208 4.208 13 C 0.111 3.889 14 O -0.235 6.235 15 C -0.412 4.412 16 H 0.101 0.899 17 C -0.026 4.026 18 N -0.922 5.922 19 Si 1.021 2.979 20 H -0.251 1.251 21 H -0.266 1.266 22 H -0.270 1.270 23 C -0.245 4.245 24 C -0.059 4.059 25 C 0.431 3.569 26 F -0.180 7.180 27 F -0.187 7.187 28 F -0.181 7.181 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.422 0.578 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.146 0.854 38 H 0.110 0.890 39 H 0.272 0.728 40 H 0.117 0.883 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.378 3.513 -16.286 34.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.287 6.287 3 C -0.009 4.009 4 H 0.169 0.831 5 C -0.005 4.005 6 N -0.364 5.364 7 C 0.301 3.699 8 O -0.457 6.457 9 C -0.114 4.114 10 C -0.147 4.147 11 C -0.076 4.076 12 C -0.227 4.227 13 C 0.061 3.939 14 O -0.142 6.142 15 C -0.488 4.488 16 H 0.118 0.882 17 C -0.223 4.223 18 N -0.561 5.561 19 Si 0.840 3.160 20 H -0.175 1.175 21 H -0.191 1.191 22 H -0.195 1.195 23 C -0.264 4.264 24 C -0.077 4.077 25 C 0.376 3.624 26 F -0.161 7.161 27 F -0.168 7.168 28 F -0.163 7.163 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.260 0.740 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.164 0.836 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -29.148 3.284 -16.506 33.658 hybrid contribution 0.569 0.594 -0.037 0.823 sum -28.580 3.879 -16.543 33.249 Atomic orbital electron populations 1.23432 0.77623 1.05459 1.02470 1.88148 1.23108 1.23460 1.93940 1.23475 0.98836 0.90017 0.88577 0.83146 1.21259 0.93977 1.02129 0.83180 1.45501 1.11185 1.69437 1.10254 1.21245 0.83754 0.76335 0.88581 1.90785 1.26250 1.50563 1.78074 1.20525 0.95072 1.06377 0.89400 1.19282 0.98495 0.93812 1.03143 1.20898 0.91992 0.98698 0.96024 1.20446 0.99750 0.97395 1.05139 1.19956 0.86588 0.95457 0.91936 1.83937 1.31436 1.35527 1.63286 1.21860 1.01381 0.88473 1.37114 0.88204 1.26629 0.94777 1.03266 0.97653 1.70202 1.10566 1.30916 1.44395 0.84507 0.78600 0.75106 0.77821 1.17467 1.19063 1.19482 1.21239 0.98242 0.98434 1.08481 1.20958 0.93924 0.98274 0.94522 1.21517 0.74020 0.75231 0.91670 1.93176 1.43056 1.96177 1.83698 1.93202 1.71410 1.68524 1.83689 1.93217 1.85231 1.40845 1.96981 0.90249 0.92850 0.87371 0.91566 0.89022 0.74024 0.84733 0.84941 0.83592 0.87183 0.91877 0.86540 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.02 10.70 113.37 1.21 1.23 16 2 O -0.37 -3.65 10.03 -148.98 -1.49 -5.14 16 3 C 0.05 0.48 2.26 30.59 0.07 0.55 16 4 H 0.15 0.28 7.79 -2.39 -0.02 0.27 16 5 C 0.12 1.78 5.12 86.38 0.44 2.23 16 6 N -0.71 -9.39 5.45 -463.05 -2.52 -11.92 16 7 C 0.51 11.33 7.82 87.66 0.69 12.02 16 8 O -0.58 -20.17 16.03 -3.04 -0.05 -20.22 16 9 C -0.07 -1.32 5.83 29.10 0.17 -1.15 16 10 C -0.15 -4.51 4.38 -19.83 -0.09 -4.59 16 11 C -0.06 -2.03 9.69 22.25 0.22 -1.82 16 12 C -0.21 -9.41 9.99 22.39 0.22 -9.18 16 13 C 0.11 5.82 6.65 22.58 0.15 5.97 16 14 O -0.23 -14.79 9.76 -22.75 -0.22 -15.01 16 15 C -0.41 -24.94 9.49 67.92 0.64 -24.30 16 16 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 17 C -0.03 -1.54 5.49 84.83 0.47 -1.08 16 18 N -0.92 -58.32 13.67 21.61 0.30 -58.02 16 19 Si 1.02 44.25 29.55 68.60 2.03 46.28 16 20 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 23 C -0.24 -11.18 9.17 22.39 0.21 -10.98 16 24 C -0.06 -2.07 9.69 22.25 0.22 -1.86 16 25 C 0.43 5.93 2.85 71.98 0.21 6.14 16 26 F -0.18 -2.35 15.50 44.97 0.70 -1.65 16 27 F -0.19 -3.52 16.74 44.97 0.75 -2.77 16 28 F -0.18 -2.78 16.80 44.97 0.76 -2.02 16 29 H 0.08 -0.11 8.08 -2.39 -0.02 -0.13 16 30 H 0.05 0.23 6.49 -2.39 -0.02 0.21 16 31 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.07 1.34 7.80 -2.39 -0.02 1.32 16 33 H 0.09 1.48 7.80 -2.38 -0.02 1.46 16 34 H 0.42 2.20 8.35 -92.71 -0.77 1.42 16 35 H 0.13 1.41 8.08 -2.39 -0.02 1.40 16 36 H 0.13 1.48 8.08 -2.39 -0.02 1.46 16 37 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 38 H 0.11 4.95 8.06 -2.92 -0.02 4.92 16 39 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 40 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 41 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -86.64 367.93 5.39 -81.25 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.33 Total: 16.05 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 4.82 Total: -26.83 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -2.23 Total: -69.94 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.76 Total: -40.37 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 2.21 Total: -6.45 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -86.64 5.39 -81.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733237569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.868 kcal (2) G-P(sol) polarization free energy of solvation -86.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds