Wall clock time and date at job start Wed Apr 1 2020 04:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00233 * 2 1 4 4 H 1.09001 * 109.46693 * 330.00219 * 3 2 1 5 5 C 1.53002 * 109.47303 * 209.99938 * 3 2 1 6 6 N 1.46503 * 109.46556 * 65.00192 * 5 3 2 7 7 C 1.34783 * 119.99585 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99976 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00059 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47151 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96224 * 270.02423 * 10 9 7 12 12 C 1.38281 * 120.13505 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47063 * 60.00398 * 20 18 16 22 22 H 1.48498 * 109.47240 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47319 * 300.00306 * 20 18 16 24 24 C 1.38073 * 119.96539 * 89.99818 * 10 9 7 25 25 C 1.53005 * 109.46803 * 89.99830 * 3 2 1 26 26 F 1.39896 * 109.46873 * 179.97438 * 25 3 2 27 27 F 1.39893 * 109.47143 * 300.00251 * 25 3 2 28 28 F 1.39902 * 109.46641 * 60.00576 * 25 3 2 29 29 H 1.08994 * 109.46756 * 299.99779 * 1 2 3 30 30 H 1.08998 * 109.47107 * 60.00116 * 1 2 3 31 31 H 1.09002 * 109.47009 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46933 * 305.00120 * 5 3 2 33 33 H 1.08997 * 109.46850 * 184.99942 * 5 3 2 34 34 H 0.97001 * 120.00603 * 0.02562 * 6 5 3 35 35 H 1.09004 * 109.46756 * 60.00007 * 9 7 6 36 36 H 1.08998 * 109.46908 * 300.00650 * 9 7 6 37 37 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 38 38 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 40 40 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.03547 * 0.04988 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 3.3590 1.2632 -0.7212 6 7 3.1477 0.9330 -2.1328 7 6 4.2013 0.8405 -2.9683 8 8 5.3243 1.0301 -2.5513 9 6 3.9840 0.5004 -4.4202 10 6 5.3124 0.4589 -5.1307 11 6 5.8200 1.6059 -5.7139 12 6 7.0388 1.5720 -6.3662 13 6 7.7562 0.3935 -6.4316 14 6 7.2467 -0.7608 -5.8521 15 8 7.9466 -1.9220 -5.9200 16 6 9.0695 -1.9172 -6.6662 17 1 9.4192 -0.9966 -7.1097 18 6 9.7755 -3.0940 -6.8641 19 7 9.3493 -4.2154 -6.3243 20 14 11.3309 -3.0874 -7.8986 21 1 12.3268 -2.1700 -7.2890 22 1 11.8928 -4.4608 -7.9564 23 1 11.0093 -2.6264 -9.2731 24 6 6.0217 -0.7238 -5.1983 25 6 2.2177 1.7713 1.4426 26 9 2.7873 3.0490 1.4426 27 9 0.9846 1.8098 2.1020 28 9 3.0716 0.8806 2.1020 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9932 0.5051 -0.2617 33 1 3.8428 2.2369 -0.6443 34 1 2.2495 0.7818 -2.4664 35 1 3.3492 1.2580 -4.8798 36 1 3.5008 -0.4736 -4.4968 37 1 5.2633 2.5298 -5.6596 38 1 7.4323 2.4691 -6.8209 39 1 8.7104 0.3689 -6.9368 40 1 9.8429 -5.0388 -6.4631 41 1 5.6246 -1.6190 -4.7431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760386413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:51 Heat of formation + Delta-G solvation = -234.294988 kcal Electronic energy + Delta-G solvation = -29731.923568 eV Core-core repulsion = 24777.101314 eV Total energy + Delta-G solvation = -4954.822254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.57403 -48.13454 -47.99533 -40.02429 -39.06013 -38.56355 -36.46975 -34.97295 -32.44397 -32.10334 -31.26258 -29.16609 -27.51176 -27.13129 -25.72067 -25.08539 -22.69064 -21.66575 -21.27736 -20.31836 -19.16351 -18.98923 -18.49532 -17.66739 -17.25962 -17.04117 -16.82232 -16.04580 -15.53319 -15.36893 -15.03961 -14.93126 -14.83881 -14.80991 -14.49257 -14.37836 -14.34687 -14.18561 -14.15559 -13.76724 -13.56075 -13.36412 -13.15834 -12.80561 -12.51131 -12.41578 -12.35994 -11.99219 -11.76606 -11.48987 -11.22125 -10.79579 -10.74579 -10.59683 -10.57701 -10.42142 -9.82401 -9.30313 -9.28679 -8.78099 -8.02044 -7.16436 -6.38694 -3.97731 1.98136 2.17648 2.44465 2.62963 2.72723 2.94072 3.17132 3.18266 3.20823 3.24535 3.53052 3.72426 4.01645 4.14006 4.18596 4.57468 4.67011 4.76934 4.89152 5.00416 5.11482 5.14667 5.16208 5.23621 5.40471 5.52619 5.68708 5.79563 5.97800 6.10475 6.15646 6.22692 6.39160 6.70656 6.96973 7.12358 7.30996 7.31393 7.42044 7.49686 7.88089 8.06289 8.23022 9.06931 9.78109 10.79563 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.001955 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.395467 B =14318.932701 C =14720.536491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.351 6.351 3 C 0.039 3.961 4 H 0.114 0.886 5 C 0.121 3.879 6 N -0.733 5.733 7 C 0.516 3.484 8 O -0.513 6.513 9 C -0.091 4.091 10 C -0.035 4.035 11 C -0.196 4.196 12 C -0.075 4.075 13 C -0.230 4.230 14 C 0.154 3.846 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.174 4.174 25 C 0.435 3.565 26 F -0.176 7.176 27 F -0.182 7.182 28 F -0.170 7.170 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.401 0.599 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.270 0.730 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.091 12.540 11.165 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.268 6.268 3 C -0.022 4.022 4 H 0.132 0.868 5 C -0.003 4.003 6 N -0.388 5.388 7 C 0.303 3.697 8 O -0.386 6.386 9 C -0.131 4.131 10 C -0.036 4.036 11 C -0.215 4.215 12 C -0.093 4.093 13 C -0.250 4.250 14 C 0.101 3.899 15 O -0.083 6.083 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.193 4.193 25 C 0.380 3.620 26 F -0.158 7.158 27 F -0.163 7.163 28 F -0.151 7.151 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.235 0.765 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.080 0.920 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.081 12.025 11.614 26.130 hybrid contribution 0.117 0.277 -0.249 0.390 sum -19.965 12.303 11.366 26.060 Atomic orbital electron populations 1.23213 0.79306 1.04530 1.01262 1.88182 1.21294 1.23327 1.94000 1.23556 0.99535 0.89163 0.89978 0.86829 1.21317 0.92688 1.03957 0.82334 1.45765 1.10388 1.74538 1.08149 1.20820 0.84270 0.76428 0.88198 1.90788 1.23019 1.47186 1.77581 1.20567 0.97718 1.04089 0.90701 1.18642 0.93998 0.93450 0.97478 1.20340 0.98367 0.96769 1.06067 1.20674 0.94302 0.96694 0.97663 1.21175 1.02557 0.93091 1.08138 1.19278 0.90755 0.86917 0.92948 1.83977 1.34990 1.27944 1.61382 1.21267 0.99964 0.96322 1.29180 0.89182 1.25270 0.99369 0.94175 0.97717 1.70029 1.39025 0.99120 1.41810 0.85793 0.80220 0.77857 0.79616 1.19531 1.20327 1.19550 1.19953 0.94832 0.97886 1.06616 1.21169 0.74345 0.75629 0.90845 1.93224 1.85100 1.40534 1.96925 1.93169 1.43342 1.96209 1.83579 1.93241 1.70745 1.67928 1.83174 0.92598 0.92825 0.88124 0.89019 0.88671 0.76472 0.88288 0.88053 0.87946 0.87491 0.85634 0.92050 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 10.70 101.05 1.08 1.14 16 2 O -0.35 -2.61 10.23 -35.23 -0.36 -2.97 16 3 C 0.04 0.26 2.21 -26.73 -0.06 0.20 16 4 H 0.11 0.41 7.79 -51.93 -0.40 0.01 16 5 C 0.12 1.12 5.10 -4.04 -0.02 1.10 16 6 N -0.73 -6.83 5.50 -60.29 -0.33 -7.16 16 7 C 0.52 7.09 7.82 -10.98 -0.09 7.01 16 8 O -0.51 -9.75 16.03 5.55 0.09 -9.66 16 9 C -0.09 -1.14 5.83 -29.04 -0.17 -1.31 16 10 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 11 C -0.20 -3.51 9.70 -39.53 -0.38 -3.89 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.23 -5.22 9.17 -39.40 -0.36 -5.59 16 14 C 0.15 3.89 6.65 -39.11 -0.26 3.63 16 15 O -0.18 -5.28 9.76 0.05 0.00 -5.28 16 16 C -0.39 -11.22 9.49 30.89 0.29 -10.92 16 17 H 0.09 2.39 5.21 -52.49 -0.27 2.11 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.88 13.67 55.48 0.76 -25.13 16 20 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 C -0.17 -3.81 9.65 -39.39 -0.38 -4.19 16 25 C 0.44 3.55 2.85 37.16 0.11 3.65 16 26 F -0.18 -1.51 16.71 2.25 0.04 -1.47 16 27 F -0.18 -1.44 15.50 2.25 0.03 -1.40 16 28 F -0.17 -1.74 16.83 2.25 0.04 -1.71 16 29 H 0.06 0.24 6.49 -51.93 -0.34 -0.10 16 30 H 0.05 0.13 8.08 -51.93 -0.42 -0.29 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 1.04 7.94 -51.93 -0.41 0.63 16 33 H 0.10 0.88 7.66 -51.93 -0.40 0.48 16 34 H 0.40 2.37 8.47 -40.82 -0.35 2.03 16 35 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 36 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 37 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -35.99 368.25 -4.95 -40.94 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.55 Total: 3.47 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -1.19 Total: -11.12 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.43 Total: -32.29 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.27 Total: -17.91 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.11 Total: -4.57 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.99 -4.95 -40.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760386413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.351 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds