Wall clock time and date at job start Wed Apr 1 2020 04:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00233 * 2 1 4 4 H 1.09001 * 109.46693 * 330.00219 * 3 2 1 5 5 C 1.53002 * 109.47303 * 209.99938 * 3 2 1 6 6 N 1.46503 * 109.46556 * 65.00192 * 5 3 2 7 7 C 1.34783 * 119.99585 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99976 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00059 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47151 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96224 * 270.02423 * 10 9 7 12 12 C 1.38281 * 120.13505 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47063 * 60.00398 * 20 18 16 22 22 H 1.48498 * 109.47240 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47319 * 300.00306 * 20 18 16 24 24 C 1.38073 * 119.96539 * 89.99818 * 10 9 7 25 25 C 1.53005 * 109.46803 * 89.99830 * 3 2 1 26 26 F 1.39896 * 109.46873 * 179.97438 * 25 3 2 27 27 F 1.39893 * 109.47143 * 300.00251 * 25 3 2 28 28 F 1.39902 * 109.46641 * 60.00576 * 25 3 2 29 29 H 1.08994 * 109.46756 * 299.99779 * 1 2 3 30 30 H 1.08998 * 109.47107 * 60.00116 * 1 2 3 31 31 H 1.09002 * 109.47009 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46933 * 305.00120 * 5 3 2 33 33 H 1.08997 * 109.46850 * 184.99942 * 5 3 2 34 34 H 0.97001 * 120.00603 * 0.02562 * 6 5 3 35 35 H 1.09004 * 109.46756 * 60.00007 * 9 7 6 36 36 H 1.08998 * 109.46908 * 300.00650 * 9 7 6 37 37 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 38 38 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 40 40 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.03547 * 0.04988 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 3.3590 1.2632 -0.7212 6 7 3.1477 0.9330 -2.1328 7 6 4.2013 0.8405 -2.9683 8 8 5.3243 1.0301 -2.5513 9 6 3.9840 0.5004 -4.4202 10 6 5.3124 0.4589 -5.1307 11 6 5.8200 1.6059 -5.7139 12 6 7.0388 1.5720 -6.3662 13 6 7.7562 0.3935 -6.4316 14 6 7.2467 -0.7608 -5.8521 15 8 7.9466 -1.9220 -5.9200 16 6 9.0695 -1.9172 -6.6662 17 1 9.4192 -0.9966 -7.1097 18 6 9.7755 -3.0940 -6.8641 19 7 9.3493 -4.2154 -6.3243 20 14 11.3309 -3.0874 -7.8986 21 1 12.3268 -2.1700 -7.2890 22 1 11.8928 -4.4608 -7.9564 23 1 11.0093 -2.6264 -9.2731 24 6 6.0217 -0.7238 -5.1983 25 6 2.2177 1.7713 1.4426 26 9 2.7873 3.0490 1.4426 27 9 0.9846 1.8098 2.1020 28 9 3.0716 0.8806 2.1020 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9932 0.5051 -0.2617 33 1 3.8428 2.2369 -0.6443 34 1 2.2495 0.7818 -2.4664 35 1 3.3492 1.2580 -4.8798 36 1 3.5008 -0.4736 -4.4968 37 1 5.2633 2.5298 -5.6596 38 1 7.4323 2.4691 -6.8209 39 1 8.7104 0.3689 -6.9368 40 1 9.8429 -5.0388 -6.4631 41 1 5.6246 -1.6190 -4.7431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760386413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:50 Heat of formation + Delta-G solvation = -260.905522 kcal Electronic energy + Delta-G solvation = -29733.077487 eV Core-core repulsion = 24777.101314 eV Total energy + Delta-G solvation = -4955.976173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.23401 -48.77027 -48.70490 -41.17211 -40.46811 -39.43904 -38.16687 -35.88663 -34.33354 -33.54595 -32.10768 -30.84317 -28.75536 -27.50184 -27.32374 -26.41147 -23.42938 -23.20272 -22.71684 -21.56460 -19.80217 -19.69910 -19.48226 -19.14663 -18.76788 -18.02603 -17.63291 -16.99015 -16.79306 -16.57229 -16.11061 -15.99071 -15.98116 -15.60025 -15.50577 -15.42198 -15.38558 -15.13732 -14.98857 -14.86267 -14.85271 -14.59898 -14.36837 -14.07642 -13.97227 -13.57019 -13.28763 -12.94262 -12.91420 -12.74441 -12.45043 -12.39582 -12.36284 -12.19585 -12.11514 -11.19143 -11.13019 -10.94803 -10.77842 -10.21736 -9.61449 -8.95345 -8.45836 -6.14399 0.53698 0.78661 1.34304 1.40284 1.46087 1.51074 1.66003 2.09249 2.18652 2.19739 2.62771 2.80074 2.91030 3.12856 3.20848 3.46926 3.55913 3.67572 3.82429 4.12649 4.14558 4.28700 4.35119 4.40923 4.48983 4.51583 4.59337 4.63214 4.69005 4.76924 4.88372 5.09570 5.14350 5.27803 5.34250 5.67772 5.71663 5.75450 5.77976 6.04242 6.26445 6.51796 6.98641 7.26932 7.80919 8.77662 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.001955 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.395467 B =14318.932701 C =14720.536491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.372 6.372 3 C 0.051 3.949 4 H 0.155 0.845 5 C 0.119 3.881 6 N -0.708 5.708 7 C 0.517 3.483 8 O -0.576 6.576 9 C -0.088 4.088 10 C -0.027 4.027 11 C -0.178 4.178 12 C -0.075 4.075 13 C -0.248 4.248 14 C 0.110 3.890 15 O -0.235 6.235 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.025 4.025 19 N -0.923 5.923 20 Si 1.020 2.980 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.193 4.193 25 C 0.432 3.568 26 F -0.179 7.179 27 F -0.179 7.179 28 F -0.188 7.188 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.422 0.578 35 H 0.151 0.849 36 H 0.123 0.877 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.116 0.884 40 H 0.272 0.728 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.675 15.544 10.292 30.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.290 6.290 3 C -0.009 4.009 4 H 0.172 0.828 5 C -0.006 4.006 6 N -0.363 5.363 7 C 0.305 3.695 8 O -0.454 6.454 9 C -0.127 4.127 10 C -0.028 4.028 11 C -0.197 4.197 12 C -0.093 4.093 13 C -0.267 4.267 14 C 0.060 3.940 15 O -0.142 6.142 16 C -0.490 4.490 17 H 0.117 0.883 18 C -0.222 4.222 19 N -0.561 5.561 20 Si 0.839 3.161 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.212 4.212 25 C 0.377 3.623 26 F -0.161 7.161 27 F -0.160 7.160 28 F -0.169 7.169 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.260 0.740 35 H 0.168 0.832 36 H 0.141 0.859 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.134 0.866 40 H 0.081 0.919 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.773 15.076 10.752 29.351 hybrid contribution 0.608 -0.417 0.161 0.754 sum -22.165 14.660 10.913 28.728 Atomic orbital electron populations 1.23429 0.77592 1.05374 1.02576 1.88168 1.23192 1.23688 1.93964 1.23485 0.98766 0.89973 0.88725 0.82817 1.21272 0.94078 1.03060 0.82142 1.45472 1.10550 1.72532 1.07742 1.20976 0.84026 0.75612 0.88920 1.90784 1.25533 1.50444 1.78666 1.20695 0.95236 1.07218 0.89570 1.19220 0.95679 0.91811 0.96095 1.21002 0.97531 0.98235 1.02894 1.21144 0.94510 0.96478 0.97157 1.21300 1.02901 0.93896 1.08601 1.19904 0.92164 0.86886 0.95057 1.83935 1.36261 1.30417 1.63628 1.21785 1.00457 0.97210 1.29595 0.88261 1.26615 1.03197 0.93363 0.99010 1.70184 1.41368 1.00037 1.44553 0.84641 0.75177 0.78330 0.77998 1.18368 1.19511 1.17927 1.20248 0.94557 0.99615 1.06824 1.21475 0.74038 0.75253 0.91572 1.93216 1.85201 1.40710 1.96969 1.93173 1.43021 1.96174 1.83665 1.93207 1.71431 1.68573 1.83704 0.92626 0.90130 0.87662 0.91813 0.88592 0.73970 0.83153 0.85897 0.83147 0.83722 0.86586 0.91865 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 10.70 113.37 1.21 1.24 16 2 O -0.37 -4.66 10.23 -148.98 -1.52 -6.18 16 3 C 0.05 0.55 2.21 30.60 0.07 0.62 16 4 H 0.15 0.41 7.79 -2.39 -0.02 0.39 16 5 C 0.12 2.00 5.10 86.38 0.44 2.44 16 6 N -0.71 -10.92 5.50 -463.05 -2.55 -13.47 16 7 C 0.52 12.84 7.82 87.66 0.69 13.53 16 8 O -0.58 -21.50 16.03 -3.04 -0.05 -21.55 16 9 C -0.09 -1.85 5.83 29.10 0.17 -1.68 16 10 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 11 C -0.18 -5.66 9.70 22.30 0.22 -5.44 16 12 C -0.08 -2.70 10.04 22.25 0.22 -2.48 16 13 C -0.25 -11.46 9.17 22.39 0.21 -11.26 16 14 C 0.11 5.81 6.65 22.58 0.15 5.96 16 15 O -0.24 -14.91 9.76 -22.74 -0.22 -15.13 16 16 C -0.41 -25.21 9.49 67.92 0.64 -24.56 16 17 H 0.10 5.55 5.21 -2.91 -0.02 5.54 16 18 C -0.02 -1.46 5.49 84.83 0.47 -1.00 16 19 N -0.92 -58.53 13.67 21.61 0.30 -58.23 16 20 Si 1.02 44.31 29.55 68.60 2.03 46.33 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 C -0.19 -8.69 9.65 22.39 0.22 -8.47 16 25 C 0.43 6.43 2.85 71.98 0.21 6.64 16 26 F -0.18 -2.82 16.71 44.97 0.75 -2.06 16 27 F -0.18 -2.51 15.50 44.97 0.70 -1.82 16 28 F -0.19 -3.85 16.83 44.97 0.76 -3.10 16 29 H 0.06 0.32 6.49 -2.39 -0.02 0.31 16 30 H 0.08 0.02 8.08 -2.39 -0.02 0.00 16 31 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 1.46 7.94 -2.39 -0.02 1.44 16 33 H 0.10 1.63 7.66 -2.39 -0.02 1.62 16 34 H 0.42 2.99 8.47 -92.71 -0.79 2.21 16 35 H 0.15 1.69 8.09 -2.38 -0.02 1.67 16 36 H 0.12 2.14 8.08 -2.39 -0.02 2.12 16 37 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 38 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.12 5.44 5.64 -2.91 -0.02 5.42 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -87.68 368.25 5.32 -82.37 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.31 Total: 18.33 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 4.82 Total: -25.48 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -2.25 Total: -71.71 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -1.79 Total: -42.87 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 2.21 Total: -6.98 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -87.68 5.32 -82.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760386413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.539 kcal (2) G-P(sol) polarization free energy of solvation -87.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds