Wall clock time and date at job start Wed Apr 1 2020 04:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00518 * 2 1 4 4 H 1.09009 * 109.46636 * 29.99827 * 3 2 1 5 5 C 1.52996 * 109.47185 * 149.99700 * 3 2 1 6 6 N 1.46495 * 109.47276 * 299.99848 * 5 3 2 7 7 C 1.34783 * 119.99931 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99796 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99878 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.46970 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96224 * 270.02075 * 10 9 7 12 12 C 1.38280 * 120.13484 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.07150 * 359.67534 * 12 11 10 14 14 C 1.38861 * 119.92830 * 0.59673 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.69892 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96952 * 89.99515 * 10 9 7 25 25 C 1.52993 * 109.47256 * 270.00188 * 3 2 1 26 26 F 1.39903 * 109.47115 * 299.99785 * 25 3 2 27 27 F 1.39906 * 109.47368 * 59.99295 * 25 3 2 28 28 F 1.39895 * 109.47644 * 179.97438 * 25 3 2 29 29 H 1.09000 * 109.47062 * 300.00109 * 1 2 3 30 30 H 1.09000 * 109.46715 * 60.00322 * 1 2 3 31 31 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46601 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.47252 * 60.00919 * 5 3 2 34 34 H 0.97001 * 120.00257 * 0.02562 * 6 5 3 35 35 H 1.08996 * 109.47386 * 59.99804 * 9 7 6 36 36 H 1.08997 * 109.47038 * 299.99640 * 9 7 6 37 37 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 38 38 H 1.08007 * 119.96121 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.03709 * 180.32387 * 13 12 11 40 40 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.03594 * 0.04940 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3590 1.2631 0.7213 6 7 3.1603 0.8171 2.1025 7 6 4.2161 0.7038 2.9326 8 8 5.3306 0.9716 2.5361 9 6 4.0118 0.2445 4.3532 10 6 5.3400 0.2041 5.0640 11 6 6.0998 -0.9516 5.0434 12 6 7.3188 -0.9927 5.6949 13 6 7.7846 0.1229 6.3628 14 6 7.0216 1.2828 6.3901 15 8 7.4739 2.3790 7.0508 16 6 8.6121 2.2400 7.7601 17 1 9.1641 1.3126 7.7191 18 6 9.0739 3.2876 8.5424 19 7 10.1841 3.1517 9.2348 20 14 8.1187 4.8913 8.6139 21 1 7.1294 4.8294 9.7197 22 1 9.0579 6.0166 8.8525 23 1 7.4095 5.1031 7.3266 24 6 5.7976 1.3210 5.7347 25 6 2.2178 1.7713 -1.4424 26 9 3.0716 0.8806 -2.1020 27 9 0.9846 1.8099 -2.1020 28 9 2.7864 3.0495 -1.4425 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.8021 2.2590 0.7216 33 1 4.0242 0.5692 0.2074 34 1 2.2689 0.6032 2.4197 35 1 3.5691 -0.7515 4.3529 36 1 3.3461 0.9379 4.8671 37 1 5.7398 -1.8239 4.5181 38 1 7.9096 -1.8967 5.6773 39 1 8.7392 0.0919 6.8670 40 1 10.5074 3.8847 9.7817 41 1 5.2037 2.2229 5.7508 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760386415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:53 Heat of formation + Delta-G solvation = -257.730943 kcal Electronic energy + Delta-G solvation = -29789.929316 eV Core-core repulsion = 24834.090803 eV Total energy + Delta-G solvation = -4955.838513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.23069 -48.76680 -48.70340 -41.20912 -40.55077 -39.43999 -38.27219 -35.85734 -34.47155 -33.60106 -32.11460 -31.04076 -28.77192 -27.48759 -27.23613 -26.42046 -23.48197 -23.21639 -22.60065 -21.49576 -19.80243 -19.71286 -19.60193 -19.17845 -18.85577 -18.00989 -17.63076 -16.99060 -16.84568 -16.74017 -16.15213 -15.99796 -15.74086 -15.62451 -15.56008 -15.42356 -15.39429 -15.13394 -15.01136 -14.86879 -14.84091 -14.60758 -14.44952 -14.19698 -13.99038 -13.90912 -13.27353 -13.02700 -12.90750 -12.76141 -12.50289 -12.42236 -12.39302 -12.31210 -11.91656 -11.29956 -11.11318 -10.95875 -10.88085 -10.19594 -9.65003 -9.04586 -8.49243 -6.22011 0.49857 0.72206 1.30680 1.35310 1.41887 1.52228 1.68053 2.07003 2.21223 2.28856 2.63268 2.76501 2.88219 3.07056 3.13088 3.17683 3.56793 3.67985 3.78510 4.09443 4.13690 4.29776 4.33837 4.43443 4.47449 4.52648 4.56995 4.62555 4.68775 4.73899 4.89932 4.99430 5.26000 5.31008 5.41204 5.66922 5.70861 5.74732 5.78193 5.93081 6.26822 6.53712 6.85048 7.28723 7.60154 8.62645 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.002093 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.201319 B =13377.112469 C =14173.359130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.367 6.367 3 C 0.051 3.949 4 H 0.150 0.850 5 C 0.120 3.880 6 N -0.707 5.707 7 C 0.516 3.484 8 O -0.576 6.576 9 C -0.087 4.087 10 C -0.029 4.029 11 C -0.171 4.171 12 C -0.080 4.080 13 C -0.242 4.242 14 C 0.117 3.883 15 O -0.247 6.247 16 C -0.399 4.399 17 H 0.079 0.921 18 C 0.008 3.992 19 N -0.925 5.925 20 Si 0.973 3.027 21 H -0.261 1.261 22 H -0.268 1.268 23 H -0.266 1.266 24 C -0.179 4.179 25 C 0.431 3.569 26 F -0.186 7.186 27 F -0.180 7.180 28 F -0.182 7.182 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.422 0.578 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.105 0.895 40 H 0.284 0.716 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.765 -6.432 -19.827 34.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.285 6.285 3 C -0.010 4.010 4 H 0.167 0.833 5 C -0.005 4.005 6 N -0.362 5.362 7 C 0.304 3.696 8 O -0.455 6.455 9 C -0.126 4.126 10 C -0.030 4.030 11 C -0.189 4.189 12 C -0.098 4.098 13 C -0.261 4.261 14 C 0.069 3.931 15 O -0.154 6.154 16 C -0.476 4.476 17 H 0.096 0.904 18 C -0.190 4.190 19 N -0.566 5.566 20 Si 0.795 3.205 21 H -0.186 1.186 22 H -0.192 1.192 23 H -0.190 1.190 24 C -0.199 4.199 25 C 0.376 3.624 26 F -0.167 7.167 27 F -0.161 7.161 28 F -0.163 7.163 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.261 0.739 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.156 0.844 39 H 0.123 0.877 40 H 0.094 0.906 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.817 -6.102 -20.000 34.006 hybrid contribution 0.307 0.764 0.006 0.824 sum -26.510 -5.337 -19.994 33.631 Atomic orbital electron populations 1.23433 0.77632 1.05497 1.02431 1.88140 1.23079 1.23347 1.93941 1.23465 0.98821 0.90064 0.88606 0.83288 1.21264 0.94047 1.02173 0.83024 1.45457 1.11133 1.69339 1.10299 1.20989 0.83878 0.76472 0.88240 1.90791 1.26180 1.50475 1.78013 1.20691 0.94987 1.07086 0.89856 1.19243 0.96307 0.92236 0.95212 1.21031 0.95443 0.99034 1.03406 1.21108 0.96463 0.96963 0.95242 1.21324 1.01865 0.95181 1.07729 1.19616 0.93902 0.86622 0.92976 1.83502 1.40350 1.32746 1.58847 1.20707 0.99052 1.03228 1.24592 0.90388 1.25306 0.96956 1.02418 0.94336 1.69735 1.22255 1.35053 1.29540 0.85189 0.78483 0.77376 0.79472 1.18585 1.19227 1.19005 1.20300 0.94863 1.00339 1.04351 1.21503 0.74035 0.75226 0.91642 1.93202 1.71384 1.68459 1.83674 1.93176 1.43072 1.96178 1.83680 1.93220 1.85283 1.40852 1.96982 0.90356 0.92873 0.87252 0.89185 0.91177 0.73945 0.83729 0.84908 0.83422 0.84382 0.87685 0.90592 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.02 10.70 113.37 1.21 1.23 16 2 O -0.37 -3.52 10.03 -148.98 -1.49 -5.02 16 3 C 0.05 0.48 2.26 30.59 0.07 0.55 16 4 H 0.15 0.36 7.79 -2.38 -0.02 0.34 16 5 C 0.12 1.79 5.12 86.38 0.44 2.23 16 6 N -0.71 -9.45 5.45 -463.07 -2.52 -11.98 16 7 C 0.52 11.49 7.82 87.66 0.69 12.18 16 8 O -0.58 -20.02 16.03 -3.03 -0.05 -20.07 16 9 C -0.09 -1.57 5.83 29.10 0.17 -1.40 16 10 C -0.03 -0.91 4.37 -19.88 -0.09 -0.99 16 11 C -0.17 -5.29 9.70 22.30 0.22 -5.07 16 12 C -0.08 -2.92 10.04 22.25 0.22 -2.70 16 13 C -0.24 -11.29 9.17 22.39 0.21 -11.08 16 14 C 0.12 5.79 6.65 22.58 0.15 5.94 16 15 O -0.25 -13.97 8.59 -22.74 -0.20 -14.17 16 16 C -0.40 -24.43 9.95 67.92 0.68 -23.75 16 17 H 0.08 5.02 5.44 -2.91 -0.02 5.00 16 18 C 0.01 0.46 5.49 84.83 0.47 0.93 16 19 N -0.92 -56.60 13.96 21.61 0.30 -56.30 16 20 Si 0.97 46.53 28.62 68.60 1.96 48.50 16 21 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 24 C -0.18 -7.11 9.64 22.39 0.22 -6.90 16 25 C 0.43 5.97 2.85 71.98 0.21 6.18 16 26 F -0.19 -3.44 16.74 44.97 0.75 -2.68 16 27 F -0.18 -2.37 15.50 44.97 0.70 -1.67 16 28 F -0.18 -2.87 16.80 44.97 0.76 -2.11 16 29 H 0.08 -0.10 8.08 -2.39 -0.02 -0.12 16 30 H 0.05 0.23 6.49 -2.39 -0.02 0.21 16 31 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.09 1.50 7.80 -2.38 -0.02 1.48 16 33 H 0.07 1.37 7.80 -2.39 -0.02 1.35 16 34 H 0.42 2.24 8.35 -92.71 -0.77 1.47 16 35 H 0.14 1.45 8.09 -2.39 -0.02 1.43 16 36 H 0.13 1.64 8.08 -2.39 -0.02 1.62 16 37 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 38 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.11 5.38 5.64 -2.91 -0.02 5.36 16 40 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 41 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -82.44 366.82 5.39 -77.06 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.33 Total: 11.09 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 4.85 Total: -22.66 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -2.22 Total: -68.27 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.74 Total: -39.25 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 2.21 Total: -6.47 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.96 Total: 48.50 kcal Total: -82.44 5.39 -77.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760386415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.674 kcal (2) G-P(sol) polarization free energy of solvation -82.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds