Wall clock time and date at job start Wed Apr 1 2020 04:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99977 * 2 1 4 4 C 1.53000 * 109.46993 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47345 * 67.94538 * 4 3 2 6 6 C 1.37089 * 120.00164 * 265.99764 * 5 4 3 7 7 H 1.08001 * 119.99960 * 136.89915 * 6 5 4 8 8 C 1.38947 * 120.00210 * 316.90448 * 6 5 4 9 9 N 1.31412 * 120.00110 * 173.04227 * 8 6 5 10 10 Si 1.86799 * 120.00147 * 353.03667 * 8 6 5 11 11 H 1.48505 * 109.46970 * 91.97186 * 10 8 6 12 12 H 1.48490 * 109.47595 * 211.97717 * 10 8 6 13 13 H 1.48507 * 109.46934 * 331.97909 * 10 8 6 14 14 C 1.34780 * 119.99485 * 85.99721 * 5 4 3 15 15 O 1.21290 * 120.00345 * 4.78374 * 14 5 4 16 16 C 1.50706 * 119.99453 * 184.78236 * 14 5 4 17 17 H 1.09001 * 109.47298 * 317.52425 * 16 14 5 18 18 O 1.42901 * 109.46589 * 197.52266 * 16 14 5 19 19 C 1.50698 * 109.46778 * 77.52659 * 16 14 5 20 20 C 1.38239 * 120.00106 * 69.18122 * 19 16 14 21 21 C 1.38230 * 120.00006 * 179.76417 * 20 19 16 22 22 C 1.38244 * 119.99967 * 0.50241 * 21 20 19 23 23 C 1.50698 * 120.00037 * 179.72770 * 22 21 20 24 24 F 1.39908 * 109.46984 * 270.02282 * 23 22 21 25 25 F 1.39903 * 109.47357 * 30.01636 * 23 22 21 26 26 F 1.39896 * 109.47237 * 150.02147 * 23 22 21 27 27 C 1.38239 * 119.99707 * 359.74997 * 22 21 20 28 28 C 1.38227 * 119.99944 * 359.97438 * 27 22 21 29 29 H 1.08995 * 109.47684 * 300.00370 * 1 2 3 30 30 H 1.09004 * 109.47019 * 60.00401 * 1 2 3 31 31 H 1.09008 * 109.47137 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47125 * 59.99415 * 3 2 1 33 33 H 1.08995 * 109.46577 * 299.99460 * 3 2 1 34 34 H 1.08996 * 109.46937 * 307.94982 * 4 3 2 35 35 H 1.08994 * 109.47039 * 187.94789 * 4 3 2 36 36 H 0.97009 * 119.99955 * 179.97438 * 9 8 6 37 37 H 0.96696 * 114.00603 * 299.99886 * 18 16 14 38 38 H 1.07995 * 119.99865 * 359.97438 * 20 19 16 39 39 H 1.08002 * 120.00212 * 180.22790 * 21 20 19 40 40 H 1.07996 * 119.99535 * 179.97438 * 27 22 21 41 41 H 1.08004 * 119.99732 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9819 0.6288 -1.2792 6 6 4.1826 -0.7212 -1.4076 7 1 3.8355 -1.2372 -2.2906 8 6 4.8324 -1.4257 -0.4016 9 7 4.9046 -2.7366 -0.4587 10 14 5.6036 -0.5096 1.0320 11 1 4.6199 -0.4056 2.1397 12 1 6.8033 -1.2469 1.5030 13 1 6.0004 0.8525 0.5931 14 6 4.1952 1.4449 -2.3305 15 8 4.1020 2.6465 -2.1942 16 6 4.5497 0.8642 -3.6752 17 1 5.2732 0.0595 -3.5443 18 8 5.1159 1.8844 -4.5002 19 6 3.3065 0.3204 -4.3309 20 6 2.3229 1.1856 -4.7723 21 6 1.1848 0.6870 -5.3781 22 6 1.0256 -0.6775 -5.5331 23 6 -0.2179 -1.2214 -6.1880 24 9 -1.1945 -1.4539 -5.2136 25 9 -0.6990 -0.2937 -7.1182 26 9 0.0853 -2.4214 -6.8401 27 6 2.0069 -1.5430 -5.0870 28 6 3.1475 -1.0440 -4.4864 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8474 0.5261 0.8112 35 1 3.9779 2.1706 0.1427 36 1 5.3586 -3.2285 0.2434 37 1 4.5261 2.6339 -4.6596 38 1 2.4452 2.2512 -4.6469 39 1 0.4180 1.3631 -5.7263 40 1 1.8823 -2.6089 -5.2077 41 1 3.9140 -1.7202 -4.1374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823494161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:05 Heat of formation + Delta-G solvation = -235.768536 kcal Electronic energy + Delta-G solvation = -32283.820432 eV Core-core repulsion = 27328.934280 eV Total energy + Delta-G solvation = -4954.886151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.12916 -47.65766 -47.57998 -40.08998 -38.69125 -37.31910 -36.05941 -34.87244 -32.24500 -32.10637 -30.97737 -29.81863 -27.54360 -25.94659 -25.18186 -24.35616 -22.82277 -22.62147 -21.31211 -19.32179 -18.49255 -18.41995 -18.33803 -17.82117 -16.80600 -16.68999 -16.03652 -15.70204 -15.29969 -14.85165 -14.77734 -14.63642 -14.47874 -14.40874 -14.30250 -14.06248 -13.83473 -13.76009 -13.74193 -13.48495 -13.38343 -13.07458 -12.90330 -12.65727 -12.51501 -11.98211 -11.83315 -11.75546 -11.60239 -11.28847 -11.06376 -10.98710 -10.82884 -10.43638 -10.17039 -9.89412 -9.32006 -9.22399 -9.06121 -8.88825 -8.46123 -7.89428 -6.49520 -4.22386 1.01247 1.43686 2.70734 3.00523 3.15501 3.19250 3.37430 3.63062 3.77444 4.02569 4.07259 4.09943 4.31265 4.47733 4.86508 4.89932 4.93004 4.95943 5.00913 5.42645 5.46965 5.50373 5.56846 5.66494 5.72076 5.76904 5.80628 5.85024 5.90739 5.96921 6.12348 6.14709 6.25570 6.29640 6.34314 6.68824 6.89852 7.25510 7.66510 7.84108 7.97718 8.12197 8.80073 9.17064 9.46830 10.59119 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.004266 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.659977 B = 6561.495395 C = 7006.730034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.056 3.944 4 C 0.097 3.903 5 N -0.446 5.446 6 C -0.343 4.343 7 H 0.113 0.887 8 C 0.073 3.927 9 N -0.862 5.862 10 Si 0.885 3.115 11 H -0.273 1.273 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.459 3.541 15 O -0.594 6.594 16 C 0.141 3.859 17 H 0.141 0.859 18 O -0.539 6.539 19 C -0.061 4.061 20 C -0.113 4.113 21 C -0.075 4.075 22 C -0.189 4.189 23 C 0.510 3.490 24 F -0.178 7.178 25 F -0.181 7.181 26 F -0.179 7.179 27 C -0.069 4.069 28 C -0.085 4.085 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.276 0.724 37 H 0.374 0.626 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.999 3.325 -6.718 10.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C -0.022 4.022 4 C -0.025 4.025 5 N -0.166 5.166 6 C -0.470 4.470 7 H 0.131 0.869 8 C -0.135 4.135 9 N -0.497 5.497 10 Si 0.714 3.286 11 H -0.200 1.200 12 H -0.217 1.217 13 H -0.188 1.188 14 C 0.248 3.752 15 O -0.480 6.480 16 C 0.079 3.921 17 H 0.158 0.842 18 O -0.343 6.343 19 C -0.062 4.062 20 C -0.131 4.131 21 C -0.093 4.093 22 C -0.191 4.191 23 C 0.456 3.544 24 F -0.159 7.159 25 F -0.163 7.163 26 F -0.160 7.160 27 C -0.087 4.087 28 C -0.103 4.103 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.223 0.777 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.387 3.125 -6.566 10.365 hybrid contribution -0.794 0.618 0.993 1.414 sum -8.181 3.743 -5.573 10.583 Atomic orbital electron populations 1.22663 0.82733 1.02210 0.98862 1.88168 1.17948 1.26736 1.95057 1.22860 0.94746 0.85196 0.99402 1.21813 0.92207 0.99656 0.88859 1.43671 1.56994 1.07663 1.08301 1.19283 1.37708 0.80632 1.09348 0.86940 1.25335 0.94975 0.95212 0.97954 1.69621 1.40238 1.05715 1.34126 0.86840 0.78675 0.80548 0.82561 1.20026 1.21688 1.18764 1.20900 0.80565 0.86477 0.87290 1.90552 1.57422 1.14849 1.85184 1.20655 0.93541 0.90877 0.87048 0.84217 1.86608 1.45068 1.32840 1.69825 1.20538 0.96064 0.94292 0.95350 1.20911 0.93218 1.00241 0.98732 1.20739 0.97917 0.93195 0.97468 1.19893 0.95265 0.95808 1.08119 1.18354 0.84224 0.75413 0.76428 1.93225 1.65360 1.94550 1.62800 1.93166 1.89668 1.66054 1.67368 1.93177 1.93132 1.47510 1.82189 1.20911 0.92528 0.99721 0.95525 1.21216 0.97919 0.94852 0.96298 0.95066 0.94814 0.90011 0.93752 0.93349 0.90793 0.89632 0.91368 0.77739 0.85102 0.85129 0.84680 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.33 10.50 -35.23 -0.37 -7.70 16 3 C 0.06 1.05 6.25 37.16 0.23 1.29 16 4 C 0.10 2.07 4.12 -4.04 -0.02 2.05 16 5 N -0.45 -10.04 2.17 -114.81 -0.25 -10.29 16 6 C -0.34 -8.24 8.43 -14.94 -0.13 -8.36 16 7 H 0.11 2.71 4.55 -52.49 -0.24 2.47 16 8 C 0.07 1.83 5.46 -17.47 -0.10 1.74 16 9 N -0.86 -22.61 13.96 55.50 0.77 -21.83 16 10 Si 0.88 20.02 24.59 -169.99 -4.18 15.84 16 11 H -0.27 -6.05 6.80 56.52 0.38 -5.66 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.26 -5.97 6.79 56.52 0.38 -5.58 16 14 C 0.46 9.86 6.71 -10.98 -0.07 9.79 16 15 O -0.59 -13.52 15.93 -13.72 -0.22 -13.73 16 16 C 0.14 2.61 2.89 -29.03 -0.08 2.53 16 17 H 0.14 2.68 7.14 -51.93 -0.37 2.31 16 18 O -0.54 -9.39 13.04 -54.50 -0.71 -10.10 16 19 C -0.06 -1.02 4.66 -104.62 -0.49 -1.51 16 20 C -0.11 -1.68 9.12 -39.58 -0.36 -2.04 16 21 C -0.08 -1.02 9.40 -39.58 -0.37 -1.40 16 22 C -0.19 -2.68 5.45 -104.62 -0.57 -3.25 16 23 C 0.51 6.76 3.36 36.00 0.12 6.88 16 24 F -0.18 -2.49 17.30 2.25 0.04 -2.45 16 25 F -0.18 -2.30 16.46 2.25 0.04 -2.27 16 26 F -0.18 -2.35 16.46 2.25 0.04 -2.32 16 27 C -0.07 -1.01 9.40 -39.59 -0.37 -1.38 16 28 C -0.08 -1.37 8.07 -39.59 -0.32 -1.69 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.64 3.02 -51.93 -0.16 1.48 16 35 H 0.09 1.75 7.48 -51.93 -0.39 1.36 16 36 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.37 5.53 7.52 45.56 0.34 5.88 16 38 H 0.13 1.77 7.28 -52.49 -0.38 1.39 16 39 H 0.13 1.49 7.60 -52.49 -0.40 1.09 16 40 H 0.14 1.76 7.60 -52.49 -0.40 1.36 16 41 H 0.15 2.42 7.03 -52.48 -0.37 2.05 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -28.59 353.71 -4.57 -33.16 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -3.64 Total: 10.11 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.41 Total: 6.25 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.53 Total: -32.12 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.30 Total: -31.53 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.11 Total: -7.04 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.18 Total: 15.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.59 -4.57 -33.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823494161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.609 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds