Wall clock time and date at job start Wed Apr 1 2020 04:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28603 * 124.61797 * 2 1 4 4 C 1.31378 * 108.71566 * 179.97438 * 3 2 1 5 5 C 1.39681 * 105.90153 * 0.02562 * 4 3 2 6 6 C 1.50697 * 127.04910 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.47012 * 124.99874 * 6 5 4 8 8 C 1.52998 * 109.47025 * 179.97438 * 7 6 5 9 9 O 1.45195 * 109.47237 * 180.02562 * 8 7 6 10 10 C 1.34779 * 117.00516 * 180.02562 * 9 8 7 11 11 O 1.21532 * 120.00091 * 359.97438 * 10 9 8 12 12 C 1.47282 * 120.00288 * 180.02562 * 10 9 8 13 13 C 1.39742 * 120.22455 * 359.97438 * 12 10 9 14 14 C 1.37772 * 119.93957 * 179.97438 * 13 12 10 15 15 C 1.38686 * 120.38697 * 0.02562 * 14 13 12 16 16 C 1.37899 * 120.45073 * 0.02562 * 15 14 13 17 17 C 1.39112 * 120.05708 * 359.95177 * 16 15 14 18 18 S 1.76209 * 120.19400 * 180.02562 * 17 16 15 19 19 C 1.76198 * 99.99917 * 6.84254 * 18 17 16 20 20 H 1.07999 * 120.00070 * 5.65490 * 19 18 17 21 21 C 1.38811 * 120.00093 * 185.65070 * 19 18 17 22 22 N 1.31546 * 119.99791 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00076 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46904 * 90.00489 * 23 21 19 25 25 H 1.48507 * 109.46986 * 210.00076 * 23 21 19 26 26 H 1.48497 * 109.47400 * 330.00344 * 23 21 19 27 27 N 1.28597 * 124.61818 * 180.25126 * 2 1 3 28 28 H 1.09000 * 109.47406 * 90.02198 * 1 2 3 29 29 H 1.09003 * 109.47267 * 210.02176 * 1 2 3 30 30 H 1.09001 * 109.47066 * 330.02227 * 1 2 3 31 31 H 1.07998 * 127.05036 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47610 * 4.99992 * 6 5 4 33 33 H 1.09004 * 109.47258 * 244.99988 * 6 5 4 34 34 H 1.09004 * 109.46642 * 60.00377 * 7 6 5 35 35 H 1.08996 * 109.47256 * 300.00466 * 7 6 5 36 36 H 1.09000 * 109.47409 * 60.00234 * 8 7 6 37 37 H 1.08996 * 109.47679 * 300.00445 * 8 7 6 38 38 H 1.08009 * 120.02710 * 0.26258 * 13 12 10 39 39 H 1.07998 * 119.81281 * 179.97438 * 14 13 12 40 40 H 1.08001 * 119.77388 * 180.02562 * 15 14 13 41 41 H 1.08003 * 119.97356 * 179.97438 * 16 15 14 42 42 H 0.96999 * 120.00287 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6984 0.0003 6 6 4.6618 -1.6064 0.0002 7 6 4.5702 -2.5742 1.1817 8 6 5.7910 -3.4965 1.1813 9 8 5.7039 -4.4154 2.3021 10 6 6.7092 -5.3014 2.4467 11 8 7.6332 -5.3062 1.6572 12 6 6.6875 -6.2645 3.5607 13 6 5.6272 -6.2635 4.4709 14 6 5.6126 -7.1674 5.5106 15 6 6.6457 -8.0804 5.6610 16 6 7.7004 -8.0948 4.7728 17 6 7.7338 -7.1908 3.7160 18 16 9.0795 -7.2065 2.5785 19 6 9.9289 -8.6486 3.1293 20 1 9.4968 -9.2679 3.9014 21 6 11.1533 -8.9887 2.5708 22 7 11.6797 -8.2342 1.6306 23 14 12.0541 -10.5172 3.1553 24 1 11.6367 -11.6820 2.3343 25 1 13.5184 -10.3125 3.0157 26 1 11.7235 -10.7721 4.5804 27 7 2.1955 -1.0583 -0.0046 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 4.3210 1.3490 0.0011 32 1 5.5686 -1.0083 0.0899 33 1 4.6901 -2.1718 -0.9313 34 1 3.6634 -3.1724 1.0919 35 1 4.5418 -2.0089 2.1132 36 1 6.6981 -2.8987 1.2708 37 1 5.8190 -4.0618 0.2498 38 1 4.8175 -5.5578 4.3567 39 1 4.7923 -7.1646 6.2130 40 1 6.6240 -8.7848 6.4793 41 1 8.5011 -8.8089 4.8974 42 1 12.5355 -8.4716 1.2406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836146674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:02 Heat of formation + Delta-G solvation = 44.487282 kcal Electronic energy + Delta-G solvation = -25905.493131 eV Core-core repulsion = 21979.662147 eV Total energy + Delta-G solvation = -3925.830985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.81365 -39.87361 -37.89621 -36.30308 -35.21823 -33.38517 -32.81569 -32.30956 -30.76076 -30.33130 -28.67122 -26.23745 -25.88324 -23.76454 -22.62930 -22.19943 -21.90642 -20.75607 -20.37413 -18.10601 -17.59091 -17.21328 -17.09577 -16.51670 -16.26515 -15.72272 -15.17884 -15.07403 -14.71870 -14.47040 -14.13871 -14.01213 -13.63757 -13.43657 -13.22635 -12.99805 -12.95658 -12.72140 -12.60086 -12.07140 -11.68198 -11.60649 -11.29438 -11.24047 -11.22659 -11.08133 -11.00910 -10.96098 -10.49253 -10.36538 -10.17248 -10.11040 -9.79053 -9.55701 -9.40167 -8.78342 -8.39753 -8.24285 -6.62829 -6.52397 -4.23887 1.39058 1.53013 2.01662 2.03497 2.14071 3.05353 3.09766 3.10104 3.16951 3.24955 3.35763 3.78452 4.00568 4.41369 4.41946 4.59445 4.62992 4.81514 4.86112 4.89357 4.90844 5.07231 5.09051 5.20060 5.33472 5.37985 5.47422 5.52316 5.58134 5.64510 5.76306 5.91845 5.93842 6.03239 6.11439 6.16584 6.32918 6.39875 6.59562 6.85907 6.87163 7.07381 7.10297 7.40511 7.55917 8.05272 8.10737 8.45121 8.94060 10.51167 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.001947 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.752812 B =14380.272272 C =15633.939199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.162 5.162 3 N -0.293 5.293 4 C -0.022 4.022 5 C 0.009 3.991 6 C -0.027 4.027 7 C -0.112 4.112 8 C 0.068 3.932 9 O -0.361 6.361 10 C 0.497 3.503 11 O -0.485 6.485 12 C -0.166 4.166 13 C -0.039 4.039 14 C -0.192 4.192 15 C -0.069 4.069 16 C -0.156 4.156 17 C -0.055 4.055 18 S 0.184 5.816 19 C -0.594 4.594 20 H 0.093 0.907 21 C 0.083 3.917 22 N -0.857 5.857 23 Si 0.921 3.079 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.267 1.267 27 N -0.284 5.284 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.198 0.802 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.141 0.859 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.316 13.814 -0.681 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.062 5.062 3 N -0.134 5.134 4 C -0.205 4.205 5 C -0.154 4.154 6 C -0.067 4.067 7 C -0.150 4.150 8 C -0.006 4.006 9 O -0.280 6.280 10 C 0.342 3.658 11 O -0.374 6.374 12 C -0.179 4.179 13 C -0.058 4.058 14 C -0.216 4.216 15 C -0.091 4.091 16 C -0.181 4.181 17 C -0.175 4.175 18 S 0.449 5.551 19 C -0.741 4.741 20 H 0.111 0.889 21 C -0.128 4.128 22 N -0.489 5.489 23 Si 0.747 3.253 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.192 1.192 27 N -0.126 5.126 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.215 0.785 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.159 0.841 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.660 14.578 -2.245 23.786 hybrid contribution 1.132 -1.643 1.295 2.379 sum -17.529 12.935 -0.950 21.805 Atomic orbital electron populations 1.22110 0.70312 1.05854 1.04870 1.47911 1.08869 0.99373 1.50095 1.74034 1.04035 1.16185 1.19160 1.24698 0.94469 0.94730 1.06580 1.23122 0.92596 0.94078 1.05636 1.19798 0.92047 0.95268 0.99565 1.21470 0.98240 0.96692 0.98601 1.22893 0.98737 0.90615 0.88358 1.86500 1.47631 1.44837 1.48994 1.21152 0.79789 0.79859 0.85004 1.90841 1.34387 1.68822 1.43351 1.18311 0.99267 1.01373 0.98945 1.21096 0.95683 0.96455 0.92582 1.20715 1.00505 0.99641 1.00725 1.21152 0.93455 0.96973 0.97561 1.21393 1.00282 1.01066 0.95340 1.23077 0.99690 0.95249 0.99435 1.84676 1.12905 1.28465 1.29052 1.24027 1.09039 1.13044 1.27956 0.88936 1.25120 0.95977 0.97734 0.93964 1.69965 1.18349 1.37088 1.23477 0.86110 0.78474 0.81208 0.79557 1.19811 1.20428 1.19167 1.74023 1.03673 1.15494 1.19410 0.89354 0.87869 0.88007 0.78517 0.89006 0.89485 0.90259 0.90805 0.91192 0.91206 0.85861 0.86806 0.86809 0.84139 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.50 11.57 59.85 0.69 1.19 16 2 N -0.16 -1.56 4.35 -16.64 -0.07 -1.63 16 3 N -0.29 -3.04 12.05 30.68 0.37 -2.67 16 4 C -0.02 -0.21 12.15 -17.21 -0.21 -0.41 16 5 C 0.01 0.08 6.61 -82.25 -0.54 -0.46 16 6 C -0.03 -0.23 5.81 -27.88 -0.16 -0.39 16 7 C -0.11 -1.15 5.57 -26.73 -0.15 -1.30 16 8 C 0.07 0.89 5.48 37.16 0.20 1.10 16 9 O -0.36 -5.99 9.47 -40.71 -0.39 -6.37 16 10 C 0.50 10.03 7.87 34.41 0.27 10.30 16 11 O -0.48 -11.11 13.57 -19.29 -0.26 -11.38 16 12 C -0.17 -3.39 5.89 -104.77 -0.62 -4.01 16 13 C -0.04 -0.66 9.61 -39.19 -0.38 -1.03 16 14 C -0.19 -3.03 10.02 -39.59 -0.40 -3.42 16 15 C -0.07 -1.17 10.03 -39.54 -0.40 -1.57 16 16 C -0.16 -3.23 9.22 -39.38 -0.36 -3.59 16 17 C -0.05 -1.25 6.15 -38.37 -0.24 -1.49 16 18 S 0.18 4.86 18.56 -107.50 -2.00 2.86 16 19 C -0.59 -16.09 9.00 30.94 0.28 -15.81 16 20 H 0.09 2.37 4.98 -52.49 -0.26 2.11 16 21 C 0.08 2.24 5.49 -17.46 -0.10 2.15 16 22 N -0.86 -24.23 13.22 55.49 0.73 -23.49 16 23 Si 0.92 20.33 29.55 -169.99 -5.02 15.31 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 27 N -0.28 -3.14 12.04 33.71 0.41 -2.73 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.12 1.80 7.61 -52.48 -0.40 1.40 16 39 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.14 3.00 5.04 -52.48 -0.26 2.73 16 42 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 377.98 15.07 5.70 5.70 Total: -1.00 -34.06 377.98 -7.77 -41.83 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.13 Total: 1.33 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -2.10 Total: -18.74 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 1.44 Total: -30.52 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.65 Total: -17.75 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -2.00 Total: 2.86 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.06 -7.77 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836146674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.312 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds