Wall clock time and date at job start Wed Apr 1 2020 04:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28603 * 124.61797 * 2 1 4 4 C 1.31378 * 108.71566 * 179.97438 * 3 2 1 5 5 C 1.39681 * 105.90153 * 0.02562 * 4 3 2 6 6 C 1.50697 * 127.04910 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.47012 * 124.99874 * 6 5 4 8 8 C 1.52998 * 109.47025 * 179.97438 * 7 6 5 9 9 O 1.45195 * 109.47237 * 180.02562 * 8 7 6 10 10 C 1.34779 * 117.00516 * 180.02562 * 9 8 7 11 11 O 1.21532 * 120.00091 * 359.97438 * 10 9 8 12 12 C 1.47282 * 120.00288 * 180.02562 * 10 9 8 13 13 C 1.39742 * 120.22455 * 359.97438 * 12 10 9 14 14 C 1.37772 * 119.93957 * 179.97438 * 13 12 10 15 15 C 1.38686 * 120.38697 * 0.02562 * 14 13 12 16 16 C 1.37899 * 120.45073 * 0.02562 * 15 14 13 17 17 C 1.39112 * 120.05708 * 359.95177 * 16 15 14 18 18 S 1.76209 * 120.19400 * 180.02562 * 17 16 15 19 19 C 1.76198 * 99.99917 * 6.84254 * 18 17 16 20 20 H 1.07999 * 120.00070 * 5.65490 * 19 18 17 21 21 C 1.38811 * 120.00093 * 185.65070 * 19 18 17 22 22 N 1.31546 * 119.99791 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00076 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46904 * 90.00489 * 23 21 19 25 25 H 1.48507 * 109.46986 * 210.00076 * 23 21 19 26 26 H 1.48497 * 109.47400 * 330.00344 * 23 21 19 27 27 N 1.28597 * 124.61818 * 180.25126 * 2 1 3 28 28 H 1.09000 * 109.47406 * 90.02198 * 1 2 3 29 29 H 1.09003 * 109.47267 * 210.02176 * 1 2 3 30 30 H 1.09001 * 109.47066 * 330.02227 * 1 2 3 31 31 H 1.07998 * 127.05036 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47610 * 4.99992 * 6 5 4 33 33 H 1.09004 * 109.47258 * 244.99988 * 6 5 4 34 34 H 1.09004 * 109.46642 * 60.00377 * 7 6 5 35 35 H 1.08996 * 109.47256 * 300.00466 * 7 6 5 36 36 H 1.09000 * 109.47409 * 60.00234 * 8 7 6 37 37 H 1.08996 * 109.47679 * 300.00445 * 8 7 6 38 38 H 1.08009 * 120.02710 * 0.26258 * 13 12 10 39 39 H 1.07998 * 119.81281 * 179.97438 * 14 13 12 40 40 H 1.08001 * 119.77388 * 180.02562 * 15 14 13 41 41 H 1.08003 * 119.97356 * 179.97438 * 16 15 14 42 42 H 0.96999 * 120.00287 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6984 0.0003 6 6 4.6618 -1.6064 0.0002 7 6 4.5702 -2.5742 1.1817 8 6 5.7910 -3.4965 1.1813 9 8 5.7039 -4.4154 2.3021 10 6 6.7092 -5.3014 2.4467 11 8 7.6332 -5.3062 1.6572 12 6 6.6875 -6.2645 3.5607 13 6 5.6272 -6.2635 4.4709 14 6 5.6126 -7.1674 5.5106 15 6 6.6457 -8.0804 5.6610 16 6 7.7004 -8.0948 4.7728 17 6 7.7338 -7.1908 3.7160 18 16 9.0795 -7.2065 2.5785 19 6 9.9289 -8.6486 3.1293 20 1 9.4968 -9.2679 3.9014 21 6 11.1533 -8.9887 2.5708 22 7 11.6797 -8.2342 1.6306 23 14 12.0541 -10.5172 3.1553 24 1 11.6367 -11.6820 2.3343 25 1 13.5184 -10.3125 3.0157 26 1 11.7235 -10.7721 4.5804 27 7 2.1955 -1.0583 -0.0046 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 4.3210 1.3490 0.0011 32 1 5.5686 -1.0083 0.0899 33 1 4.6901 -2.1718 -0.9313 34 1 3.6634 -3.1724 1.0919 35 1 4.5418 -2.0089 2.1132 36 1 6.6981 -2.8987 1.2708 37 1 5.8190 -4.0618 0.2498 38 1 4.8175 -5.5578 4.3567 39 1 4.7923 -7.1646 6.2130 40 1 6.6240 -8.7848 6.4793 41 1 8.5011 -8.8089 4.8974 42 1 12.5355 -8.4716 1.2406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836146674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:01 Heat of formation + Delta-G solvation = 23.847207 kcal Electronic energy + Delta-G solvation = -25906.388152 eV Core-core repulsion = 21979.662147 eV Total energy + Delta-G solvation = -3926.726006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.49664 -41.39784 -39.38357 -37.64578 -36.14716 -34.78364 -34.06268 -33.12971 -32.22589 -31.85908 -29.40447 -27.86042 -27.04574 -25.13415 -23.52194 -23.29010 -23.08145 -22.03524 -21.37621 -19.88824 -18.79570 -18.27324 -17.95659 -17.77416 -17.52322 -17.27760 -16.95436 -15.90506 -15.76355 -15.70720 -15.61710 -15.18941 -14.89563 -14.63935 -14.25592 -14.10189 -13.96692 -13.55574 -13.52880 -13.39695 -13.29019 -12.98570 -12.92949 -12.58955 -12.53525 -12.31156 -12.05512 -11.96288 -11.78186 -11.73709 -11.46920 -11.41299 -11.35848 -11.21441 -10.45768 -10.11811 -10.04242 -9.89549 -8.53223 -8.47438 -6.27559 -0.14094 0.51381 0.82621 1.26450 1.37876 1.40807 1.45706 1.53579 1.57935 1.69990 1.78481 2.20194 2.84591 2.97426 3.17899 3.19973 3.61519 3.92293 3.96477 4.03848 4.09204 4.24687 4.27331 4.31198 4.36656 4.45085 4.50118 4.54956 4.60043 4.62506 4.68060 4.78005 4.79984 4.98550 5.09465 5.16833 5.24964 5.31722 5.36825 5.44971 5.48418 5.57816 5.65106 5.79193 6.07690 6.14460 6.90638 6.94470 7.35737 8.58589 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.001947 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.752812 B =14380.272272 C =15633.939199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.165 5.165 3 N -0.312 5.312 4 C -0.026 4.026 5 C -0.003 4.003 6 C -0.022 4.022 7 C -0.096 4.096 8 C 0.063 3.937 9 O -0.352 6.352 10 C 0.497 3.503 11 O -0.518 6.518 12 C -0.175 4.175 13 C -0.036 4.036 14 C -0.162 4.162 15 C -0.057 4.057 16 C -0.175 4.175 17 C -0.067 4.067 18 S 0.070 5.930 19 C -0.601 4.601 20 H 0.098 0.902 21 C 0.025 3.975 22 N -0.903 5.903 23 Si 0.995 3.005 24 H -0.267 1.267 25 H -0.273 1.273 26 H -0.256 1.256 27 N -0.308 5.308 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.225 0.775 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.156 0.844 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.126 0.874 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.221 13.951 1.827 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.067 5.067 3 N -0.154 5.154 4 C -0.207 4.207 5 C -0.166 4.166 6 C -0.062 4.062 7 C -0.134 4.134 8 C -0.011 4.011 9 O -0.270 6.270 10 C 0.344 3.656 11 O -0.409 6.409 12 C -0.186 4.186 13 C -0.055 4.055 14 C -0.185 4.185 15 C -0.078 4.078 16 C -0.200 4.200 17 C -0.185 4.185 18 S 0.330 5.670 19 C -0.747 4.747 20 H 0.116 0.884 21 C -0.181 4.181 22 N -0.537 5.537 23 Si 0.816 3.184 24 H -0.192 1.192 25 H -0.198 1.198 26 H -0.180 1.180 27 N -0.151 5.151 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.242 0.758 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.174 0.826 39 H 0.184 0.816 40 H 0.174 0.826 41 H 0.144 0.856 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.674 14.742 0.317 26.214 hybrid contribution 1.602 -1.514 0.666 2.303 sum -20.072 13.228 0.983 24.059 Atomic orbital electron populations 1.22508 0.68210 1.07236 1.06296 1.48385 1.10119 0.98806 1.49343 1.74017 1.04720 1.16780 1.19894 1.25202 0.94997 0.94854 1.05693 1.23321 0.92583 0.94691 1.05960 1.19810 0.92647 0.95022 0.98691 1.21356 0.96144 0.96182 0.99713 1.23209 1.00493 0.90322 0.87085 1.86475 1.45917 1.44470 1.50139 1.21311 0.79765 0.80039 0.84516 1.90846 1.35833 1.69768 1.44485 1.18677 0.99576 1.00684 0.99698 1.21530 0.95027 0.97250 0.91733 1.21368 1.00547 0.96747 0.99807 1.21632 0.91785 0.97319 0.97037 1.21454 1.01661 1.00844 0.96041 1.22992 0.98778 0.97150 0.99567 1.84819 1.17193 1.31069 1.33929 1.24217 1.09362 1.13129 1.28034 0.88414 1.26160 0.96801 1.01069 0.94044 1.70111 1.18931 1.39322 1.25350 0.85011 0.77097 0.76914 0.79414 1.19176 1.19840 1.17986 1.73979 1.04454 1.16512 1.20201 0.87913 0.86789 0.86393 0.75847 0.86793 0.89223 0.91001 0.90472 0.90875 0.91560 0.82614 0.81578 0.82644 0.85615 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 11.57 127.77 1.48 2.22 16 2 N -0.16 -2.97 4.35 -206.55 -0.90 -3.87 16 3 N -0.31 -6.08 12.05 -56.86 -0.69 -6.77 16 4 C -0.03 -0.43 12.15 85.11 1.03 0.60 16 5 C 0.00 -0.06 6.61 42.98 0.28 0.22 16 6 C -0.02 -0.35 5.81 29.85 0.17 -0.17 16 7 C -0.10 -1.84 5.57 30.60 0.17 -1.67 16 8 C 0.06 1.61 5.48 71.98 0.39 2.00 16 9 O -0.35 -11.37 9.47 -56.90 -0.54 -11.91 16 10 C 0.50 20.35 7.87 70.20 0.55 20.90 16 11 O -0.52 -25.04 13.57 19.73 0.27 -24.77 16 12 C -0.17 -7.04 5.89 -19.96 -0.12 -7.16 16 13 C -0.04 -1.08 9.61 22.52 0.22 -0.87 16 14 C -0.16 -4.16 10.02 22.27 0.22 -3.93 16 15 C -0.06 -1.68 10.03 22.30 0.22 -1.46 16 16 C -0.18 -7.12 9.22 22.40 0.21 -6.91 16 17 C -0.07 -3.13 6.15 23.06 0.14 -2.98 16 18 S 0.07 3.97 18.56 -56.49 -1.05 2.92 16 19 C -0.60 -34.27 9.00 67.96 0.61 -33.66 16 20 H 0.10 5.22 4.98 -2.91 -0.01 5.21 16 21 C 0.03 1.42 5.49 84.87 0.47 1.89 16 22 N -0.90 -54.10 13.22 21.65 0.29 -53.81 16 23 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 27 N -0.31 -6.50 12.04 -47.25 -0.57 -7.07 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.23 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.16 3.73 7.61 -2.91 -0.02 3.71 16 39 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 41 H 0.13 5.45 5.04 -2.91 -0.01 5.43 16 42 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -80.45 377.98 5.95 -74.50 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 1.05 Total: 16.78 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 6.06 Total: -30.98 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -1.87 Total: -71.52 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.27 Total: -36.68 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.05 Total: 2.92 kcal Total: -80.45 5.95 -74.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836146674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.344 kcal (2) G-P(sol) polarization free energy of solvation -80.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds