Wall clock time and date at job start Wed Apr 1 2020 04:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00112 * 2 1 4 4 C 1.52993 * 109.47212 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47118 * 65.00260 * 4 3 2 6 6 C 1.36894 * 119.99892 * 263.60988 * 5 4 3 7 7 H 1.07994 * 120.00226 * 133.66726 * 6 5 4 8 8 C 1.39029 * 119.99878 * 313.66693 * 6 5 4 9 9 N 1.31381 * 120.00091 * 349.97463 * 8 6 5 10 10 Si 1.86799 * 120.00018 * 169.97181 * 8 6 5 11 11 H 1.48500 * 109.46874 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47136 * 119.99845 * 10 8 6 13 13 H 1.48501 * 109.47570 * 240.00076 * 10 8 6 14 14 C 1.34769 * 119.99939 * 83.61129 * 5 4 3 15 15 O 1.21619 * 120.00601 * 348.78438 * 14 5 4 16 16 C 1.47525 * 119.99890 * 168.50701 * 14 5 4 17 17 C 1.39789 * 120.08235 * 338.02516 * 16 14 5 18 18 C 1.37687 * 119.91202 * 179.74610 * 17 16 14 19 19 C 1.39083 * 120.08391 * 0.54975 * 18 17 16 20 20 N 1.39778 * 119.91368 * 179.72207 * 19 18 17 21 21 C 1.37909 * 126.54177 * 130.00474 * 20 19 18 22 22 C 1.34382 * 106.94266 * 180.02562 * 21 20 19 23 23 N 1.34391 * 108.42927 * 359.97438 * 22 21 20 24 24 C 1.31260 * 109.37050 * 359.73354 * 23 22 21 25 25 S 1.76197 * 125.82986 * 180.29193 * 24 23 22 26 26 C 1.39083 * 120.17148 * 359.70150 * 19 18 17 27 27 C 1.37684 * 120.08375 * 0.02562 * 26 19 18 28 28 H 1.08999 * 109.46977 * 59.99680 * 1 2 3 29 29 H 1.09002 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46963 * 299.99942 * 1 2 3 31 31 H 1.08997 * 109.47103 * 60.00038 * 3 2 1 32 32 H 1.09004 * 109.46970 * 300.00479 * 3 2 1 33 33 H 1.09001 * 109.46909 * 304.99883 * 4 3 2 34 34 H 1.09007 * 109.47233 * 185.00233 * 4 3 2 35 35 H 0.97000 * 119.99577 * 179.97438 * 9 8 6 36 36 H 1.08000 * 120.04753 * 0.02562 * 17 16 14 37 37 H 1.08005 * 119.96026 * 180.29751 * 18 17 16 38 38 H 1.07994 * 126.52497 * 0.03179 * 21 20 19 39 39 H 1.07999 * 125.77903 * 180.02562 * 22 21 20 40 40 H 1.41000 * 99.99866 * 270.16931 * 25 24 23 41 41 H 1.08000 * 119.96080 * 179.97438 * 26 19 18 42 42 H 1.08002 * 120.04381 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.2227 -0.7812 -1.3003 7 1 3.8321 -1.3735 -2.1144 8 6 4.9765 -1.3852 -0.3003 9 7 5.6150 -0.6460 0.5783 10 14 5.0813 -3.2479 -0.2060 11 1 4.2785 -3.8450 -1.3033 12 1 6.4981 -3.6715 -0.3428 13 1 4.5513 -3.7080 1.1027 14 6 4.1374 1.3187 -2.3579 15 8 3.7283 2.4638 -2.3779 16 6 4.8162 0.7572 -3.5412 17 6 5.6789 -0.3339 -3.4022 18 6 6.3065 -0.8585 -4.5098 19 6 6.0920 -0.2969 -5.7640 20 7 6.7356 -0.8286 -6.8851 21 6 6.1453 -1.1809 -8.0806 22 6 7.1220 -1.6467 -8.8774 23 7 8.2837 -1.5876 -8.2044 24 6 8.0690 -1.0926 -7.0078 25 16 9.2925 -0.8197 -5.7697 26 6 5.2385 0.7921 -5.9056 27 6 4.6029 1.3187 -4.8036 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9786 2.1765 0.0890 35 1 6.1406 -1.0675 1.2761 36 1 5.8494 -0.7678 -2.4280 37 1 6.9695 -1.7045 -4.4039 38 1 5.0976 -1.0981 -8.3291 39 1 6.9949 -2.0067 -9.8877 40 1 9.2533 -2.0643 -5.1082 41 1 5.0748 1.2258 -6.8810 42 1 3.9400 2.1640 -4.9144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837233633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:35 Heat of formation + Delta-G solvation = 36.466522 kcal Electronic energy + Delta-G solvation = -28075.140026 eV Core-core repulsion = 24148.961235 eV Total energy + Delta-G solvation = -3926.178791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.14994 -39.53601 -37.98701 -36.92492 -34.99929 -33.87042 -31.82380 -30.91515 -30.16817 -29.49135 -28.50146 -25.92569 -25.16137 -23.86280 -22.72791 -22.16417 -21.21326 -21.03051 -19.50673 -18.68904 -17.82607 -16.91936 -16.38520 -15.80078 -15.63644 -15.37211 -14.91234 -14.65105 -14.63024 -14.49864 -14.36632 -14.00106 -13.75718 -13.70805 -13.49345 -13.21470 -13.01144 -12.37056 -12.14566 -11.96462 -11.62547 -11.43326 -11.31165 -11.21391 -11.09499 -10.93983 -10.80958 -10.47961 -10.34619 -10.20534 -10.06305 -9.25437 -9.04908 -8.76996 -8.75676 -8.68384 -8.30394 -8.17913 -7.61156 -6.54574 -4.28117 0.87109 1.21843 1.68582 1.72700 2.41587 2.77703 2.99831 3.01447 3.12108 3.14708 3.52162 3.93827 4.35039 4.40088 4.56708 4.64331 4.87428 5.04148 5.05533 5.16454 5.35506 5.58603 5.60761 5.64969 5.69674 5.77827 5.91727 5.93348 5.99077 6.01716 6.10721 6.24119 6.29835 6.44910 6.48824 6.64573 6.71404 6.91692 7.04731 7.12250 7.24885 7.33053 7.69573 7.70722 7.86737 8.20140 8.86629 9.27123 9.69518 10.46774 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.003495 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.841829 B = 8008.636008 C = 8972.763996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.049 3.951 4 C 0.123 3.877 5 N -0.420 5.420 6 C -0.319 4.319 7 H 0.088 0.912 8 C 0.046 3.954 9 N -0.857 5.857 10 Si 0.910 3.090 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.275 1.275 14 C 0.507 3.493 15 O -0.600 6.600 16 C -0.080 4.080 17 C -0.053 4.053 18 C -0.123 4.123 19 C 0.103 3.897 20 N -0.385 5.385 21 C -0.019 4.019 22 C -0.032 4.032 23 N -0.443 5.443 24 C 0.180 3.820 25 S -0.021 6.021 26 C -0.127 4.127 27 C -0.068 4.068 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.273 0.727 36 H 0.182 0.818 37 H 0.116 0.884 38 H 0.182 0.818 39 H 0.178 0.822 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 -1.714 -8.022 8.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C -0.029 4.029 4 C -0.001 4.001 5 N -0.136 5.136 6 C -0.447 4.447 7 H 0.106 0.894 8 C -0.161 4.161 9 N -0.493 5.493 10 Si 0.736 3.264 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.201 1.201 14 C 0.297 3.703 15 O -0.487 6.487 16 C -0.083 4.083 17 C -0.071 4.071 18 C -0.142 4.142 19 C 0.012 3.988 20 N -0.065 5.065 21 C -0.154 4.154 22 C -0.184 4.184 23 N -0.163 5.163 24 C -0.189 4.189 25 S 0.132 5.868 26 C -0.146 4.146 27 C -0.088 4.088 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.199 0.801 37 H 0.134 0.866 38 H 0.199 0.801 39 H 0.195 0.805 40 H 0.064 0.936 41 H 0.143 0.857 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.110 -1.199 -7.421 7.518 hybrid contribution -1.831 -1.577 0.023 2.416 sum -1.720 -2.776 -7.398 8.087 Atomic orbital electron populations 1.22639 0.83292 1.01730 0.98908 1.88101 1.17503 1.27857 1.95090 1.23054 0.96458 0.84330 0.99023 1.21444 0.89267 0.98782 0.90601 1.43123 1.55856 1.07341 1.07283 1.19333 1.31158 0.82526 1.11714 0.89415 1.25491 0.94390 0.99887 0.96320 1.69818 1.27720 1.35959 1.15769 0.86123 0.78155 0.82991 0.79173 1.18936 1.20514 1.20087 1.18276 0.82244 0.85062 0.84695 1.90628 1.54832 1.19115 1.84137 1.20271 0.98011 0.96067 0.93920 1.22621 0.91051 0.92817 1.00615 1.20984 1.01346 1.00869 0.91039 1.17818 0.98946 0.96686 0.85354 1.43684 1.06959 1.44580 1.11260 1.23162 1.00685 1.05638 0.85960 1.22454 0.88198 1.06688 1.01013 1.70916 1.27325 1.15680 1.02402 1.24444 0.85446 1.10168 0.98794 1.87054 1.44529 1.22908 1.32356 1.20738 0.98935 0.95462 0.99501 1.21108 0.98068 0.98901 0.90688 0.94962 0.90435 0.95102 0.94274 0.93523 0.87263 0.91260 0.91629 0.80098 0.86618 0.80104 0.80500 0.93627 0.85683 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.41 10.48 -35.23 -0.37 -7.78 16 3 C 0.05 0.97 6.20 37.15 0.23 1.20 16 4 C 0.12 2.72 5.15 -4.04 -0.02 2.70 16 5 N -0.42 -9.77 2.43 -116.00 -0.28 -10.05 16 6 C -0.32 -7.36 5.61 -15.00 -0.08 -7.44 16 7 H 0.09 2.03 7.27 -52.49 -0.38 1.65 16 8 C 0.05 1.06 4.42 -17.45 -0.08 0.98 16 9 N -0.86 -20.54 11.53 55.50 0.64 -19.90 16 10 Si 0.91 18.24 29.56 -169.99 -5.03 13.21 16 11 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 12 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 13 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 14 C 0.51 11.72 7.36 -12.48 -0.09 11.63 16 15 O -0.60 -14.83 15.89 5.26 0.08 -14.75 16 16 C -0.08 -1.59 5.63 -104.95 -0.59 -2.19 16 17 C -0.05 -1.00 8.20 -39.20 -0.32 -1.32 16 18 C -0.12 -2.04 8.84 -39.47 -0.35 -2.39 16 19 C 0.10 1.61 5.86 -83.61 -0.49 1.12 16 20 N -0.38 -5.66 2.90 -60.69 -0.18 -5.84 16 21 C -0.02 -0.23 11.31 -16.18 -0.18 -0.41 16 22 C -0.03 -0.40 11.84 -17.79 -0.21 -0.61 16 23 N -0.44 -6.79 11.28 -13.36 -0.15 -6.94 16 24 C 0.18 2.76 8.08 -88.41 -0.71 2.05 16 25 S -0.02 -0.29 24.60 -107.50 -2.64 -2.94 16 26 C -0.13 -1.90 9.67 -39.47 -0.38 -2.29 16 27 C -0.07 -1.17 9.58 -39.20 -0.38 -1.54 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.96 7.66 -51.93 -0.40 0.56 16 33 H 0.11 2.58 5.90 -51.93 -0.31 2.27 16 34 H 0.07 1.54 7.80 -51.93 -0.41 1.13 16 35 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 36 H 0.18 3.78 4.71 -52.49 -0.25 3.53 16 37 H 0.12 1.79 7.57 -52.48 -0.40 1.39 16 38 H 0.18 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.10 1.22 9.55 96.90 0.93 2.14 16 41 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.14 2.24 7.80 -52.49 -0.41 1.83 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -28.21 372.06 -8.58 -36.78 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -3.71 Total: 9.52 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -2.55 Total: 3.08 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.03 Total: -42.74 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.29 Total: -22.53 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -2.64 Total: -2.94 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.21 -8.58 -36.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837233633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.251 kcal (2) G-P(sol) polarization free energy of solvation -28.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds