Wall clock time and date at job start Wed Apr 1 2020 04:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00112 * 2 1 4 4 C 1.52993 * 109.47212 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47118 * 65.00260 * 4 3 2 6 6 C 1.36894 * 119.99892 * 263.60988 * 5 4 3 7 7 H 1.07994 * 120.00226 * 133.66726 * 6 5 4 8 8 C 1.39029 * 119.99878 * 313.66693 * 6 5 4 9 9 N 1.31381 * 120.00091 * 349.97463 * 8 6 5 10 10 Si 1.86799 * 120.00018 * 169.97181 * 8 6 5 11 11 H 1.48500 * 109.46874 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47136 * 119.99845 * 10 8 6 13 13 H 1.48501 * 109.47570 * 240.00076 * 10 8 6 14 14 C 1.34769 * 119.99939 * 83.61129 * 5 4 3 15 15 O 1.21619 * 120.00601 * 348.78438 * 14 5 4 16 16 C 1.47525 * 119.99890 * 168.50701 * 14 5 4 17 17 C 1.39789 * 120.08235 * 338.02516 * 16 14 5 18 18 C 1.37687 * 119.91202 * 179.74610 * 17 16 14 19 19 C 1.39083 * 120.08391 * 0.54975 * 18 17 16 20 20 N 1.39778 * 119.91368 * 179.72207 * 19 18 17 21 21 C 1.37909 * 126.54177 * 130.00474 * 20 19 18 22 22 C 1.34382 * 106.94266 * 180.02562 * 21 20 19 23 23 N 1.34391 * 108.42927 * 359.97438 * 22 21 20 24 24 C 1.31260 * 109.37050 * 359.73354 * 23 22 21 25 25 S 1.76197 * 125.82986 * 180.29193 * 24 23 22 26 26 C 1.39083 * 120.17148 * 359.70150 * 19 18 17 27 27 C 1.37684 * 120.08375 * 0.02562 * 26 19 18 28 28 H 1.08999 * 109.46977 * 59.99680 * 1 2 3 29 29 H 1.09002 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46963 * 299.99942 * 1 2 3 31 31 H 1.08997 * 109.47103 * 60.00038 * 3 2 1 32 32 H 1.09004 * 109.46970 * 300.00479 * 3 2 1 33 33 H 1.09001 * 109.46909 * 304.99883 * 4 3 2 34 34 H 1.09007 * 109.47233 * 185.00233 * 4 3 2 35 35 H 0.97000 * 119.99577 * 179.97438 * 9 8 6 36 36 H 1.08000 * 120.04753 * 0.02562 * 17 16 14 37 37 H 1.08005 * 119.96026 * 180.29751 * 18 17 16 38 38 H 1.07994 * 126.52497 * 0.03179 * 21 20 19 39 39 H 1.07999 * 125.77903 * 180.02562 * 22 21 20 40 40 H 1.41000 * 99.99866 * 270.16931 * 25 24 23 41 41 H 1.08000 * 119.96080 * 179.97438 * 26 19 18 42 42 H 1.08002 * 120.04381 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.2227 -0.7812 -1.3003 7 1 3.8321 -1.3735 -2.1144 8 6 4.9765 -1.3852 -0.3003 9 7 5.6150 -0.6460 0.5783 10 14 5.0813 -3.2479 -0.2060 11 1 4.2785 -3.8450 -1.3033 12 1 6.4981 -3.6715 -0.3428 13 1 4.5513 -3.7080 1.1027 14 6 4.1374 1.3187 -2.3579 15 8 3.7283 2.4638 -2.3779 16 6 4.8162 0.7572 -3.5412 17 6 5.6789 -0.3339 -3.4022 18 6 6.3065 -0.8585 -4.5098 19 6 6.0920 -0.2969 -5.7640 20 7 6.7356 -0.8286 -6.8851 21 6 6.1453 -1.1809 -8.0806 22 6 7.1220 -1.6467 -8.8774 23 7 8.2837 -1.5876 -8.2044 24 6 8.0690 -1.0926 -7.0078 25 16 9.2925 -0.8197 -5.7697 26 6 5.2385 0.7921 -5.9056 27 6 4.6029 1.3187 -4.8036 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9786 2.1765 0.0890 35 1 6.1406 -1.0675 1.2761 36 1 5.8494 -0.7678 -2.4280 37 1 6.9695 -1.7045 -4.4039 38 1 5.0976 -1.0981 -8.3291 39 1 6.9949 -2.0067 -9.8877 40 1 9.2533 -2.0643 -5.1082 41 1 5.0748 1.2258 -6.8810 42 1 3.9400 2.1640 -4.9144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837233633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:34 Heat of formation + Delta-G solvation = 21.587834 kcal Electronic energy + Delta-G solvation = -28075.785215 eV Core-core repulsion = 24148.961235 eV Total energy + Delta-G solvation = -3926.823979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.21808 -41.11661 -39.45049 -38.44177 -36.76349 -35.10557 -33.59417 -32.26655 -31.56252 -30.60947 -29.90378 -27.33841 -26.81278 -25.24096 -24.01844 -23.59190 -22.48756 -22.12016 -21.18650 -19.88271 -19.44892 -18.02149 -17.97489 -17.31251 -17.06488 -16.77888 -16.48874 -16.12020 -16.00351 -15.73600 -15.52829 -15.40323 -15.09566 -15.03631 -14.88700 -14.51850 -14.35721 -13.81778 -13.60068 -13.37558 -13.27834 -13.02898 -12.85947 -12.61435 -12.51778 -12.46415 -12.12640 -12.06792 -11.82199 -11.47569 -11.23802 -10.96303 -10.59481 -10.41202 -10.07503 -9.79333 -9.56281 -9.40476 -9.31280 -8.30376 -6.08239 -0.40702 0.13190 0.37914 0.57919 1.37487 1.42183 1.46867 1.55883 1.66776 1.95966 2.00706 2.27376 2.78200 2.86551 3.00986 3.18852 3.66854 3.76776 3.85996 4.09713 4.22558 4.27788 4.32012 4.39210 4.44862 4.51482 4.54686 4.59405 4.60565 4.66189 4.76347 4.84533 4.87397 5.00266 5.20831 5.31540 5.32230 5.45724 5.56164 5.57558 5.70611 5.98639 6.03481 6.39797 6.41149 6.68519 7.08950 7.50314 7.92782 8.72242 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.003495 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.841829 B = 8008.636008 C = 8972.763996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.061 3.939 4 C 0.121 3.879 5 N -0.429 5.429 6 C -0.318 4.318 7 H 0.084 0.916 8 C 0.016 3.984 9 N -0.887 5.887 10 Si 0.963 3.037 11 H -0.261 1.261 12 H -0.274 1.274 13 H -0.280 1.280 14 C 0.496 3.504 15 O -0.627 6.627 16 C -0.109 4.109 17 C -0.059 4.059 18 C -0.120 4.120 19 C 0.118 3.882 20 N -0.394 5.394 21 C -0.011 4.011 22 C -0.036 4.036 23 N -0.464 5.464 24 C 0.158 3.842 25 S -0.036 6.036 26 C -0.111 4.111 27 C -0.063 4.063 28 H 0.037 0.963 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.274 0.726 36 H 0.160 0.840 37 H 0.125 0.875 38 H 0.217 0.783 39 H 0.211 0.789 40 H 0.113 0.887 41 H 0.160 0.840 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.100 -2.776 -10.239 10.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.017 4.017 4 C -0.003 4.003 5 N -0.145 5.145 6 C -0.447 4.447 7 H 0.101 0.899 8 C -0.188 4.188 9 N -0.523 5.523 10 Si 0.787 3.213 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.206 1.206 14 C 0.288 3.712 15 O -0.516 6.516 16 C -0.112 4.112 17 C -0.078 4.078 18 C -0.140 4.140 19 C 0.027 3.973 20 N -0.076 5.076 21 C -0.146 4.146 22 C -0.186 4.186 23 N -0.185 5.185 24 C -0.209 4.209 25 S 0.117 5.883 26 C -0.130 4.130 27 C -0.083 4.083 28 H 0.056 0.944 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.177 0.823 37 H 0.143 0.857 38 H 0.234 0.766 39 H 0.227 0.773 40 H 0.078 0.922 41 H 0.178 0.822 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.658 -2.278 -9.656 9.943 hybrid contribution -1.587 -1.261 0.572 2.106 sum -2.245 -3.539 -9.084 10.004 Atomic orbital electron populations 1.22875 0.80653 1.03317 1.00200 1.88036 1.20444 1.27888 1.95333 1.22838 0.94624 0.84586 0.99613 1.21385 0.91276 0.97651 0.89964 1.43294 1.56003 1.07613 1.07603 1.19318 1.31181 0.82439 1.11725 0.89890 1.26037 0.93903 1.02978 0.95872 1.69903 1.28627 1.37316 1.16448 0.85311 0.78224 0.78976 0.78743 1.18509 1.19969 1.20551 1.18811 0.81955 0.84877 0.85605 1.90580 1.56067 1.20117 1.84825 1.20155 0.99485 0.97615 0.93932 1.22265 0.91951 0.93060 1.00503 1.20976 1.01092 1.00968 0.90948 1.17815 0.97967 0.96175 0.85387 1.43754 1.06955 1.45201 1.11642 1.23827 1.02243 1.04006 0.84478 1.23080 0.87207 1.06091 1.02253 1.70912 1.28922 1.15960 1.02716 1.24546 0.85860 1.11320 0.99223 1.87048 1.44781 1.23978 1.32494 1.20974 0.97394 0.94479 1.00141 1.21176 0.98169 0.98775 0.90199 0.94422 0.88772 0.92963 0.91604 0.94781 0.88884 0.92366 0.91591 0.82333 0.85670 0.76628 0.77253 0.92248 0.82242 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.00 10.48 -148.98 -1.56 -17.56 16 3 C 0.06 2.43 6.20 71.98 0.45 2.88 16 4 C 0.12 5.57 5.15 86.38 0.45 6.02 16 5 N -0.43 -20.69 2.43 -639.16 -1.55 -22.24 16 6 C -0.32 -15.06 5.61 84.09 0.47 -14.59 16 7 H 0.08 3.94 7.27 -2.91 -0.02 3.92 16 8 C 0.02 0.76 4.42 84.95 0.38 1.14 16 9 N -0.89 -43.76 11.53 21.68 0.25 -43.51 16 10 Si 0.96 37.62 29.56 68.60 2.03 39.65 16 11 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 12 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 13 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 14 C 0.50 23.68 7.36 86.69 0.64 24.32 16 15 O -0.63 -31.96 15.89 -4.09 -0.06 -32.03 16 16 C -0.11 -4.41 5.63 -20.08 -0.11 -4.52 16 17 C -0.06 -2.26 8.20 22.51 0.18 -2.08 16 18 C -0.12 -3.87 8.84 22.34 0.20 -3.67 16 19 C 0.12 3.40 5.86 38.28 0.22 3.63 16 20 N -0.39 -10.43 2.90 -345.92 -1.00 -11.43 16 21 C -0.01 -0.23 11.31 82.85 0.94 0.71 16 22 C -0.04 -0.76 11.84 83.42 0.99 0.23 16 23 N -0.46 -13.14 11.28 -196.18 -2.21 -15.35 16 24 C 0.16 4.53 8.08 179.58 1.45 5.98 16 25 S -0.04 -0.95 24.60 -56.49 -1.39 -2.34 16 26 C -0.11 -3.00 9.67 22.34 0.22 -2.79 16 27 C -0.06 -2.11 9.58 22.52 0.22 -1.89 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.03 1.43 7.66 -2.39 -0.02 1.41 16 33 H 0.09 4.58 5.90 -2.39 -0.01 4.57 16 34 H 0.06 2.73 7.80 -2.38 -0.02 2.71 16 35 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 36 H 0.16 6.84 4.71 -2.91 -0.01 6.83 16 37 H 0.13 3.74 7.57 -2.91 -0.02 3.72 16 38 H 0.22 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.21 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.11 2.66 9.55 73.80 0.70 3.36 16 41 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 42 H 0.14 4.50 7.80 -2.91 -0.02 4.47 16 Total: -1.00 -62.44 372.06 4.20 -58.24 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 1.78 Total: 29.24 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 7.92 Total: 17.34 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -4.52 Total: -92.53 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -1.63 Total: -49.59 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -1.39 Total: -2.34 kcal Total: -62.44 4.20 -58.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837233633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.828 kcal (2) G-P(sol) polarization free energy of solvation -62.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds