Wall clock time and date at job start Wed Apr 1 2020 04:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00378 * 2 1 4 4 C 1.52997 * 109.47411 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47301 * 65.00173 * 4 3 2 6 6 C 1.37103 * 119.99826 * 267.86084 * 5 4 3 7 7 H 1.08003 * 119.99838 * 152.57338 * 6 5 4 8 8 C 1.38951 * 120.00163 * 332.57793 * 6 5 4 9 9 N 1.31412 * 119.99722 * 328.96245 * 8 6 5 10 10 Si 1.86794 * 120.00290 * 148.95469 * 8 6 5 11 11 H 1.48501 * 109.46838 * 90.00118 * 10 8 6 12 12 H 1.48490 * 109.47609 * 210.00133 * 10 8 6 13 13 H 1.48504 * 109.47055 * 330.00502 * 10 8 6 14 14 C 1.34780 * 120.00384 * 88.13773 * 5 4 3 15 15 O 1.21296 * 119.99387 * 354.36142 * 14 5 4 16 16 C 1.50696 * 120.00014 * 174.36713 * 14 5 4 17 17 H 1.08995 * 109.47897 * 46.08154 * 16 14 5 18 18 O 1.42902 * 109.46943 * 166.08673 * 16 14 5 19 19 C 1.50703 * 109.46901 * 286.08174 * 16 14 5 20 20 C 1.38266 * 119.99925 * 279.03086 * 19 16 14 21 21 C 1.38210 * 119.99981 * 179.76775 * 20 19 16 22 22 C 1.38265 * 119.99921 * 0.50259 * 21 20 19 23 23 C 1.38219 * 119.99769 * 359.74763 * 22 21 20 24 24 C 1.50697 * 119.99774 * 179.97438 * 23 22 21 25 25 F 1.39905 * 109.46748 * 270.02178 * 24 23 22 26 26 F 1.39903 * 109.47461 * 30.02012 * 24 23 22 27 27 F 1.39902 * 109.47311 * 150.02305 * 24 23 22 28 28 C 1.38211 * 120.00154 * 99.30225 * 19 16 14 29 29 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47781 * 300.00167 * 1 2 3 31 31 H 1.09000 * 109.46630 * 60.00431 * 1 2 3 32 32 H 1.08997 * 109.46912 * 59.99378 * 3 2 1 33 33 H 1.08998 * 109.47162 * 300.00007 * 3 2 1 34 34 H 1.09003 * 109.47106 * 304.99885 * 4 3 2 35 35 H 1.09002 * 109.46874 * 185.00152 * 4 3 2 36 36 H 0.97002 * 119.99786 * 180.02562 * 9 8 6 37 37 H 0.96700 * 114.00018 * 59.99830 * 18 16 14 38 38 H 1.07995 * 119.99865 * 359.97438 * 20 19 16 39 39 H 1.07998 * 120.00593 * 180.22705 * 21 20 19 40 40 H 1.07994 * 119.99783 * 179.72581 * 22 21 20 41 41 H 1.07994 * 119.99890 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1402 -0.7955 -1.3214 7 1 4.0256 -1.3048 -2.2669 8 6 4.4531 -1.5180 -0.1766 9 7 5.1654 -0.9615 0.7774 10 14 3.8613 -3.2802 0.0067 11 1 4.8787 -4.2049 -0.5546 12 1 3.6545 -3.5860 1.4450 13 1 2.5803 -3.4508 -0.7249 14 6 4.2273 1.3298 -2.3312 15 8 3.9904 2.5190 -2.2996 16 6 4.8018 0.7086 -3.5782 17 1 4.2598 -0.2081 -3.8105 18 8 4.6768 1.6249 -4.6677 19 6 6.2575 0.3888 -3.3554 20 6 7.2102 1.3835 -3.4762 21 6 8.5448 1.0912 -3.2671 22 6 8.9282 -0.1982 -2.9472 23 6 7.9763 -1.1936 -2.8315 24 6 8.3943 -2.5990 -2.4834 25 9 8.6585 -3.3113 -3.6582 26 9 9.5474 -2.5602 -1.6922 27 9 7.3649 -3.2302 -1.7768 28 6 6.6408 -0.9001 -3.0356 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6886 1.8463 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8508 0.5684 0.8427 35 1 3.9784 2.1765 0.0902 36 1 5.3841 -1.4661 1.5764 37 1 5.1357 2.4648 -4.5299 38 1 6.9112 2.3895 -3.7308 39 1 9.2887 1.8688 -3.3579 40 1 9.9715 -0.4275 -2.7882 41 1 5.8970 -1.6778 -2.9451 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837236539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:14 Heat of formation + Delta-G solvation = -239.878684 kcal Electronic energy + Delta-G solvation = -32699.107298 eV Core-core repulsion = 27744.042917 eV Total energy + Delta-G solvation = -4955.064381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.80246 -47.33720 -47.23553 -39.83581 -38.39200 -37.11617 -35.89290 -34.67626 -31.84078 -31.61083 -31.38288 -29.38828 -26.48710 -25.80375 -25.68866 -24.64729 -22.47827 -21.91637 -21.05299 -19.30973 -18.16479 -18.08844 -17.99461 -17.75865 -16.52183 -16.09835 -15.68616 -15.49174 -15.35529 -14.98572 -14.58736 -14.40793 -14.26597 -14.19310 -13.98779 -13.75733 -13.71223 -13.53764 -13.40190 -13.36010 -13.06268 -12.87109 -12.39643 -12.32280 -12.05443 -11.88865 -11.59002 -11.35092 -11.22788 -11.08151 -11.02712 -10.91576 -10.55547 -10.42813 -10.26396 -10.04319 -9.18097 -9.01407 -8.93352 -8.80000 -8.13254 -7.68574 -6.48807 -3.99157 1.27533 1.60187 3.01095 3.14168 3.27214 3.32996 3.60837 3.86166 4.06776 4.09784 4.38174 4.46853 4.56913 4.78106 4.90843 4.99212 5.09334 5.11063 5.32672 5.50804 5.63333 5.70443 5.71591 5.78887 5.85923 5.97253 6.04246 6.08322 6.20385 6.22376 6.27995 6.49197 6.53408 6.58233 6.80481 7.06620 7.17094 7.35034 7.65345 7.89563 7.95486 8.23672 9.00508 9.36806 9.77516 10.52194 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.005535 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.554126 B = 5057.403729 C = 6758.286155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.054 3.946 4 C 0.108 3.892 5 N -0.408 5.408 6 C -0.342 4.342 7 H 0.089 0.911 8 C 0.070 3.930 9 N -0.837 5.837 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.431 3.569 15 O -0.608 6.608 16 C 0.147 3.853 17 H 0.123 0.877 18 O -0.544 6.544 19 C -0.090 4.090 20 C -0.079 4.079 21 C -0.128 4.128 22 C -0.076 4.076 23 C -0.185 4.185 24 C 0.507 3.493 25 F -0.184 7.184 26 F -0.182 7.182 27 F -0.167 7.167 28 C -0.020 4.020 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.271 0.729 37 H 0.375 0.625 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.634 -0.142 -4.012 5.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.023 4.023 4 C -0.016 4.016 5 N -0.125 5.125 6 C -0.468 4.468 7 H 0.107 0.893 8 C -0.139 4.139 9 N -0.472 5.472 10 Si 0.720 3.280 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.190 1.190 14 C 0.219 3.781 15 O -0.496 6.496 16 C 0.085 3.915 17 H 0.140 0.860 18 O -0.349 6.349 19 C -0.091 4.091 20 C -0.097 4.097 21 C -0.146 4.146 22 C -0.094 4.094 23 C -0.187 4.187 24 C 0.453 3.547 25 F -0.166 7.166 26 F -0.164 7.164 27 F -0.148 7.148 28 C -0.038 4.038 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.223 0.777 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.366 -0.316 -4.013 5.247 hybrid contribution -0.182 -0.560 0.800 0.994 sum 3.184 -0.876 -3.213 4.607 Atomic orbital electron populations 1.22643 0.83392 1.01744 0.98856 1.88131 1.17390 1.27580 1.95037 1.22964 0.96215 0.84439 0.98704 1.21587 0.89770 0.99041 0.91227 1.43395 1.53928 1.06606 1.08561 1.19154 1.50092 0.80643 0.96937 0.89322 1.24973 0.93443 0.99498 0.96021 1.69975 1.29043 1.38996 1.09158 0.86448 0.80128 0.83274 0.78149 1.19875 1.20727 1.19011 1.20694 0.83690 0.86714 0.86973 1.90526 1.59420 1.15626 1.84020 1.20473 0.91085 0.93284 0.86637 0.85981 1.86542 1.78109 1.29791 1.40448 1.20106 0.95637 0.93319 1.00015 1.21057 0.92894 0.98902 0.96814 1.20910 0.95984 0.95993 1.01718 1.20795 0.98723 0.92622 0.97252 1.19838 0.96194 0.91815 1.10811 1.18359 0.74745 0.87207 0.74349 1.93185 1.94047 1.80885 1.48468 1.93152 1.51273 1.96853 1.75112 1.93271 1.58506 1.84056 1.78963 1.20863 0.93770 0.97333 0.91860 0.90453 0.95183 0.94913 0.94348 0.93968 0.86290 0.91247 0.91847 0.77667 0.85689 0.85353 0.85434 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.58 10.28 -35.23 -0.36 -7.94 16 3 C 0.05 1.11 6.27 37.16 0.23 1.34 16 4 C 0.11 2.45 5.37 -4.05 -0.02 2.42 16 5 N -0.41 -9.59 2.55 -114.81 -0.29 -9.88 16 6 C -0.34 -8.02 6.46 -14.93 -0.10 -8.12 16 7 H 0.09 2.01 5.52 -52.48 -0.29 1.72 16 8 C 0.07 1.66 4.79 -17.47 -0.08 1.58 16 9 N -0.84 -20.79 11.43 55.50 0.63 -20.16 16 10 Si 0.89 19.48 29.65 -169.99 -5.04 14.44 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 14 C 0.43 9.85 6.91 -10.99 -0.08 9.77 16 15 O -0.61 -14.99 15.98 -13.97 -0.22 -15.22 16 16 C 0.15 2.88 2.95 -29.04 -0.09 2.79 16 17 H 0.12 2.36 6.60 -51.93 -0.34 2.01 16 18 O -0.54 -9.95 12.91 -54.74 -0.71 -10.65 16 19 C -0.09 -1.63 4.77 -104.62 -0.50 -2.13 16 20 C -0.08 -1.25 9.32 -39.58 -0.37 -1.62 16 21 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 22 C -0.08 -1.13 9.40 -39.58 -0.37 -1.50 16 23 C -0.19 -3.16 5.45 -104.62 -0.57 -3.73 16 24 C 0.51 8.55 3.36 36.00 0.12 8.67 16 25 F -0.18 -2.91 17.30 2.25 0.04 -2.87 16 26 F -0.18 -2.97 16.46 2.25 0.04 -2.93 16 27 F -0.17 -3.19 16.46 2.25 0.04 -3.15 16 28 C -0.02 -0.37 7.85 -39.59 -0.31 -0.68 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.12 2.89 5.22 -51.93 -0.27 2.62 16 35 H 0.07 1.58 7.56 -51.93 -0.39 1.19 16 36 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.37 5.95 7.13 45.56 0.32 6.27 16 38 H 0.13 1.75 6.75 -52.49 -0.35 1.40 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.13 1.59 7.60 -52.49 -0.40 1.19 16 41 H 0.14 2.70 5.97 -52.49 -0.31 2.39 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -28.48 357.74 -5.61 -34.09 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -3.71 Total: 10.68 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -1.42 Total: 8.20 kcal Atomic # 7 Polarization: -30.38 SS G_CDS: 0.34 Total: -30.04 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.29 Total: -33.81 kcal Atomic # 9 Polarization: -9.07 SS G_CDS: 0.11 Total: -8.95 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.04 Total: 14.44 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.48 -5.61 -34.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837236539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.786 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds