Wall clock time and date at job start Wed Apr 1 2020 04:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00378 * 2 1 4 4 C 1.52997 * 109.47411 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47301 * 65.00173 * 4 3 2 6 6 C 1.37103 * 119.99826 * 267.86084 * 5 4 3 7 7 H 1.08003 * 119.99838 * 152.57338 * 6 5 4 8 8 C 1.38951 * 120.00163 * 332.57793 * 6 5 4 9 9 N 1.31412 * 119.99722 * 328.96245 * 8 6 5 10 10 Si 1.86794 * 120.00290 * 148.95469 * 8 6 5 11 11 H 1.48501 * 109.46838 * 90.00118 * 10 8 6 12 12 H 1.48490 * 109.47609 * 210.00133 * 10 8 6 13 13 H 1.48504 * 109.47055 * 330.00502 * 10 8 6 14 14 C 1.34780 * 120.00384 * 88.13773 * 5 4 3 15 15 O 1.21296 * 119.99387 * 354.36142 * 14 5 4 16 16 C 1.50696 * 120.00014 * 174.36713 * 14 5 4 17 17 H 1.08995 * 109.47897 * 46.08154 * 16 14 5 18 18 O 1.42902 * 109.46943 * 166.08673 * 16 14 5 19 19 C 1.50703 * 109.46901 * 286.08174 * 16 14 5 20 20 C 1.38266 * 119.99925 * 279.03086 * 19 16 14 21 21 C 1.38210 * 119.99981 * 179.76775 * 20 19 16 22 22 C 1.38265 * 119.99921 * 0.50259 * 21 20 19 23 23 C 1.38219 * 119.99769 * 359.74763 * 22 21 20 24 24 C 1.50697 * 119.99774 * 179.97438 * 23 22 21 25 25 F 1.39905 * 109.46748 * 270.02178 * 24 23 22 26 26 F 1.39903 * 109.47461 * 30.02012 * 24 23 22 27 27 F 1.39902 * 109.47311 * 150.02305 * 24 23 22 28 28 C 1.38211 * 120.00154 * 99.30225 * 19 16 14 29 29 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47781 * 300.00167 * 1 2 3 31 31 H 1.09000 * 109.46630 * 60.00431 * 1 2 3 32 32 H 1.08997 * 109.46912 * 59.99378 * 3 2 1 33 33 H 1.08998 * 109.47162 * 300.00007 * 3 2 1 34 34 H 1.09003 * 109.47106 * 304.99885 * 4 3 2 35 35 H 1.09002 * 109.46874 * 185.00152 * 4 3 2 36 36 H 0.97002 * 119.99786 * 180.02562 * 9 8 6 37 37 H 0.96700 * 114.00018 * 59.99830 * 18 16 14 38 38 H 1.07995 * 119.99865 * 359.97438 * 20 19 16 39 39 H 1.07998 * 120.00593 * 180.22705 * 21 20 19 40 40 H 1.07994 * 119.99783 * 179.72581 * 22 21 20 41 41 H 1.07994 * 119.99890 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1402 -0.7955 -1.3214 7 1 4.0256 -1.3048 -2.2669 8 6 4.4531 -1.5180 -0.1766 9 7 5.1654 -0.9615 0.7774 10 14 3.8613 -3.2802 0.0067 11 1 4.8787 -4.2049 -0.5546 12 1 3.6545 -3.5860 1.4450 13 1 2.5803 -3.4508 -0.7249 14 6 4.2273 1.3298 -2.3312 15 8 3.9904 2.5190 -2.2996 16 6 4.8018 0.7086 -3.5782 17 1 4.2598 -0.2081 -3.8105 18 8 4.6768 1.6249 -4.6677 19 6 6.2575 0.3888 -3.3554 20 6 7.2102 1.3835 -3.4762 21 6 8.5448 1.0912 -3.2671 22 6 8.9282 -0.1982 -2.9472 23 6 7.9763 -1.1936 -2.8315 24 6 8.3943 -2.5990 -2.4834 25 9 8.6585 -3.3113 -3.6582 26 9 9.5474 -2.5602 -1.6922 27 9 7.3649 -3.2302 -1.7768 28 6 6.6408 -0.9001 -3.0356 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.6886 1.8463 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8508 0.5684 0.8427 35 1 3.9784 2.1765 0.0902 36 1 5.3841 -1.4661 1.5764 37 1 5.1357 2.4648 -4.5299 38 1 6.9112 2.3895 -3.7308 39 1 9.2887 1.8688 -3.3579 40 1 9.9715 -0.4275 -2.7882 41 1 5.8970 -1.6778 -2.9451 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837236539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:13 Heat of formation + Delta-G solvation = -256.542180 kcal Electronic energy + Delta-G solvation = -32699.829881 eV Core-core repulsion = 27744.042917 eV Total energy + Delta-G solvation = -4955.786964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.14185 -48.65474 -48.60873 -41.35011 -39.90231 -38.65045 -37.43383 -36.45527 -33.58185 -33.03180 -32.68035 -30.98558 -27.95997 -27.31391 -26.99572 -26.33897 -23.96442 -23.29441 -22.46947 -21.06273 -19.49950 -19.46348 -19.40493 -19.34350 -18.19859 -17.42506 -17.21116 -17.00546 -16.88341 -16.47503 -16.24774 -16.00398 -15.74148 -15.51279 -15.45202 -15.17119 -15.06856 -14.91639 -14.79221 -14.76596 -14.57995 -14.36728 -13.79167 -13.70057 -13.63207 -13.41049 -13.06385 -12.95817 -12.88672 -12.66899 -12.54440 -12.37396 -12.18117 -12.09379 -11.83456 -11.63218 -10.94724 -10.56756 -10.42023 -10.08461 -9.66268 -9.50255 -8.32616 -5.84639 0.00754 0.33919 1.38314 1.48835 1.57079 1.69926 1.91459 2.31876 2.52491 2.75244 2.84719 2.99728 3.05767 3.18913 3.45390 3.54982 3.73260 3.91898 4.08791 4.15832 4.24415 4.26597 4.37931 4.46044 4.53429 4.55752 4.60562 4.61713 4.76870 4.79156 4.85286 4.95318 5.23210 5.32056 5.35421 5.48708 5.51859 5.83652 5.89092 6.39134 6.40527 6.60101 7.17023 7.56631 7.96711 8.69224 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.005535 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.554126 B = 5057.403729 C = 6758.286155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.065 3.935 4 C 0.104 3.896 5 N -0.417 5.417 6 C -0.339 4.339 7 H 0.092 0.908 8 C 0.046 3.954 9 N -0.861 5.861 10 Si 0.934 3.066 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.423 3.577 15 O -0.631 6.631 16 C 0.157 3.843 17 H 0.118 0.882 18 O -0.545 6.545 19 C -0.108 4.108 20 C -0.084 4.084 21 C -0.117 4.117 22 C -0.072 4.072 23 C -0.199 4.199 24 C 0.510 3.490 25 F -0.178 7.178 26 F -0.178 7.178 27 F -0.184 7.184 28 C -0.038 4.038 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.270 0.730 37 H 0.385 0.615 38 H 0.142 0.858 39 H 0.170 0.830 40 H 0.156 0.844 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.428 0.227 -4.442 6.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.012 4.012 4 C -0.019 4.019 5 N -0.133 5.133 6 C -0.466 4.466 7 H 0.109 0.891 8 C -0.161 4.161 9 N -0.497 5.497 10 Si 0.759 3.241 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.212 3.788 15 O -0.521 6.521 16 C 0.095 3.905 17 H 0.136 0.864 18 O -0.352 6.352 19 C -0.109 4.109 20 C -0.102 4.102 21 C -0.134 4.134 22 C -0.090 4.090 23 C -0.200 4.200 24 C 0.456 3.544 25 F -0.160 7.160 26 F -0.159 7.159 27 F -0.165 7.165 28 C -0.056 4.056 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.236 0.764 38 H 0.160 0.840 39 H 0.187 0.813 40 H 0.173 0.827 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.154 0.047 -4.452 6.089 hybrid contribution -0.399 -0.625 0.897 1.163 sum 3.756 -0.578 -3.555 5.204 Atomic orbital electron populations 1.22869 0.80847 1.03166 1.00255 1.88065 1.20244 1.27732 1.95290 1.22770 0.94488 0.84630 0.99336 1.21553 0.91684 0.98039 0.90668 1.43560 1.54047 1.06755 1.08949 1.19252 1.49519 0.80768 0.97034 0.89085 1.25375 0.93429 1.01402 0.95885 1.70031 1.30213 1.39860 1.09585 0.85840 0.79630 0.80914 0.77694 1.19759 1.21004 1.19049 1.21303 0.83113 0.86533 0.87815 1.90492 1.60288 1.16586 1.84726 1.20263 0.92134 0.92931 0.85165 0.86447 1.86517 1.78463 1.30366 1.39805 1.20024 0.95086 0.93993 1.01831 1.21373 0.93441 0.99141 0.96229 1.21365 0.95964 0.96609 0.99482 1.21205 0.99656 0.92366 0.95760 1.19958 0.96193 0.92366 1.11470 1.18352 0.74465 0.87220 0.74345 1.93194 1.93956 1.80794 1.48019 1.93155 1.50882 1.96837 1.75059 1.93233 1.59436 1.84411 1.79444 1.20780 0.94308 0.97252 0.93260 0.89101 0.92961 0.94249 0.91722 0.95120 0.87815 0.92145 0.91973 0.76431 0.83993 0.81289 0.82665 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 2.00 16 2 O -0.39 -16.20 10.28 -148.98 -1.53 -17.73 16 3 C 0.07 2.63 6.27 71.98 0.45 3.08 16 4 C 0.10 4.81 5.37 86.38 0.46 5.27 16 5 N -0.42 -19.79 2.55 -635.54 -1.62 -21.42 16 6 C -0.34 -16.09 6.46 84.04 0.54 -15.55 16 7 H 0.09 4.21 5.52 -2.91 -0.02 4.19 16 8 C 0.05 2.19 4.79 84.93 0.41 2.60 16 9 N -0.86 -43.25 11.43 21.66 0.25 -43.00 16 10 Si 0.93 40.05 29.65 68.60 2.03 42.09 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 14 C 0.42 19.45 6.91 87.66 0.61 20.06 16 15 O -0.63 -31.25 15.98 15.58 0.25 -31.00 16 16 C 0.16 6.14 2.95 29.10 0.09 6.23 16 17 H 0.12 4.62 6.60 -2.39 -0.02 4.61 16 18 O -0.54 -19.55 12.91 -130.32 -1.68 -21.24 16 19 C -0.11 -3.87 4.77 -19.86 -0.09 -3.96 16 20 C -0.08 -2.49 9.32 22.27 0.21 -2.28 16 21 C -0.12 -2.89 10.05 22.27 0.22 -2.66 16 22 C -0.07 -1.94 9.40 22.27 0.21 -1.73 16 23 C -0.20 -6.54 5.45 -19.87 -0.11 -6.65 16 24 C 0.51 16.74 3.36 71.23 0.24 16.98 16 25 F -0.18 -5.44 17.30 44.97 0.78 -4.66 16 26 F -0.18 -5.52 16.46 44.97 0.74 -4.78 16 27 F -0.18 -7.04 16.46 44.97 0.74 -6.30 16 28 C -0.04 -1.38 7.85 22.27 0.17 -1.20 16 29 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 5.14 5.22 -2.39 -0.01 5.12 16 35 H 0.06 2.81 7.56 -2.39 -0.02 2.80 16 36 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 37 H 0.39 11.80 7.13 -74.06 -0.53 11.27 16 38 H 0.14 3.64 6.75 -2.91 -0.02 3.62 16 39 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 40 H 0.16 3.28 7.60 -2.91 -0.02 3.26 16 41 H 0.13 4.96 5.97 -2.91 -0.02 4.94 16 Total: -1.00 -60.77 357.74 5.19 -55.58 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.58 Total: 30.27 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: 4.66 Total: 22.18 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -1.38 Total: -64.42 kcal Atomic # 8 Polarization: -67.00 SS G_CDS: -2.96 Total: -69.97 kcal Atomic # 9 Polarization: -17.99 SS G_CDS: 2.26 Total: -15.73 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.09 kcal Total: -60.77 5.19 -55.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837236539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.961 kcal (2) G-P(sol) polarization free energy of solvation -60.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds