Wall clock time and date at job start Wed Apr 1 2020 04:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37846 * 119.99917 * 2 1 4 4 N 1.32570 * 120.89428 * 0.02562 * 3 2 1 5 5 C 1.32351 * 121.50068 * 179.97438 * 4 3 2 6 6 N 1.31151 * 122.96003 * 359.97438 * 5 4 3 7 7 C 1.34162 * 120.49391 * 0.02562 * 6 5 4 8 8 C 1.40101 * 121.82715 * 180.27475 * 7 6 5 9 9 C 1.38623 * 119.36229 * 180.28427 * 8 7 6 10 10 C 1.47874 * 119.73133 * 179.73453 * 9 8 7 11 11 O 1.21453 * 119.99952 * 359.72637 * 10 9 8 12 12 O 1.34698 * 120.00044 * 179.72689 * 10 9 8 13 13 C 1.45202 * 116.99692 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46867 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 S 1.80999 * 109.47017 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99745 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00485 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.99444 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00505 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99420 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47085 * 89.99665 * 21 19 17 23 23 H 1.48500 * 109.46844 * 209.99595 * 21 19 17 24 24 H 1.48495 * 109.47331 * 329.99741 * 21 19 17 25 25 C 1.40441 * 120.54022 * 359.45921 * 9 8 7 26 26 C 1.36096 * 120.76438 * 0.25310 * 25 9 8 27 27 C 1.40017 * 119.87639 * 0.02562 * 26 25 9 28 28 H 1.08997 * 109.47353 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47265 * 300.00386 * 1 2 3 30 30 H 1.09008 * 109.46692 * 60.00543 * 1 2 3 31 31 H 0.96994 * 119.99924 * 179.97438 * 2 1 3 32 32 H 1.08005 * 118.51990 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.31817 * 0.03634 * 8 7 6 34 34 H 1.09001 * 109.46860 * 60.00406 * 13 12 10 35 35 H 1.08993 * 109.47426 * 299.99768 * 13 12 10 36 36 H 1.09001 * 109.46801 * 300.00397 * 14 13 12 37 37 H 1.09001 * 109.46998 * 59.99993 * 14 13 12 38 38 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 39 39 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 40 40 H 0.96998 * 120.00447 * 180.02562 * 20 19 17 41 41 H 1.07997 * 119.61575 * 180.26801 * 25 9 8 42 42 H 1.08005 * 120.06136 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1542 1.1938 0.0000 4 7 1.5094 2.3521 0.0005 5 6 2.1589 3.5052 0.0010 6 7 3.4679 3.5868 0.0016 7 6 4.2193 2.4754 0.0011 8 6 5.6192 2.5300 0.0073 9 6 6.3456 1.3493 0.0005 10 6 7.8235 1.3974 0.0011 11 8 8.3962 2.4685 0.0025 12 8 8.5346 0.2535 0.0001 13 6 9.9814 0.3767 0.0002 14 6 10.6120 -1.0174 -0.0004 15 6 12.1365 -0.8875 0.0003 16 16 12.8824 -2.5367 0.0003 17 6 14.5895 -2.1003 0.0020 18 1 14.8811 -1.0605 0.0030 19 6 15.5595 -3.0931 0.0019 20 7 15.2042 -4.3605 0.0011 21 14 17.3694 -2.6305 0.0043 22 1 17.8474 -2.5093 1.4051 23 1 18.1499 -3.6819 -0.6959 24 1 17.5494 -1.3324 -0.6941 25 6 5.6892 0.1077 -0.0011 26 6 4.3300 0.0388 -0.0012 27 6 3.5719 1.2160 -0.0002 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.9500 -0.8400 0.0004 32 1 1.5852 4.4203 0.0018 33 1 6.1277 3.4828 0.0133 34 1 10.2998 0.9187 0.8907 35 1 10.2998 0.9203 -0.8893 36 1 10.2935 -1.5605 0.8893 37 1 10.2936 -1.5598 -0.8907 38 1 12.4552 -0.3442 -0.8892 39 1 12.4545 -0.3453 0.8908 40 1 15.8821 -5.0543 0.0015 41 1 6.2698 -0.8029 -0.0020 42 1 3.8370 -0.9222 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840653382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:05 Heat of formation + Delta-G solvation = -25.144980 kcal Electronic energy + Delta-G solvation = -25483.606586 eV Core-core repulsion = 21554.756120 eV Total energy + Delta-G solvation = -3928.850466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81019 -40.52613 -38.03822 -37.16134 -36.71712 -33.60003 -33.16621 -32.46545 -32.09793 -30.56949 -27.69264 -26.66227 -25.58876 -24.98273 -24.76253 -22.32704 -21.80566 -21.37049 -19.58863 -18.62373 -17.95474 -17.57506 -17.35239 -16.69764 -16.68904 -15.82602 -15.80503 -15.34098 -14.83811 -14.74918 -14.71262 -14.41245 -14.28972 -14.24683 -13.68497 -13.30420 -13.00966 -12.88200 -12.79740 -12.46215 -12.35465 -12.14158 -11.94074 -11.39498 -11.18262 -11.10336 -11.02859 -10.95358 -10.79030 -10.65248 -10.34480 -9.98455 -9.66737 -9.64998 -9.60314 -9.09475 -8.38545 -8.32811 -6.58825 -6.26794 -3.97970 -0.28283 0.15751 1.41769 1.92092 2.33948 2.35679 2.84503 3.19954 3.20735 3.27638 3.49947 3.67428 3.70221 3.84283 4.00222 4.10748 4.18168 4.34106 4.58076 4.61849 4.70253 4.89013 4.94882 5.06779 5.10288 5.12770 5.14137 5.23693 5.30877 5.39781 5.44910 5.60342 5.72912 5.73887 5.76099 5.86095 6.01471 6.10428 6.19636 6.32921 6.41289 6.45323 6.62954 6.95230 7.53552 7.57375 7.86598 8.32982 9.19794 10.81350 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.028558 B = 0.001514 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.224479 B =18490.781237 C =19439.952091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.700 5.700 3 C 0.471 3.529 4 N -0.593 5.593 5 C 0.348 3.652 6 N -0.546 5.546 7 C 0.176 3.824 8 C -0.036 4.036 9 C -0.073 4.073 10 C 0.505 3.495 11 O -0.497 6.497 12 O -0.347 6.347 13 C 0.073 3.927 14 C -0.098 4.098 15 C -0.115 4.115 16 S -0.123 6.123 17 C -0.519 4.519 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.869 5.869 21 Si 0.919 3.081 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.087 4.087 26 C -0.080 4.080 27 C -0.176 4.176 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.415 0.585 32 H 0.197 0.803 33 H 0.157 0.843 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.268 0.732 41 H 0.150 0.850 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.508 9.099 0.003 32.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.332 5.332 3 C 0.214 3.786 4 N -0.321 5.321 5 C 0.057 3.943 6 N -0.265 5.265 7 C 0.051 3.949 8 C -0.056 4.056 9 C -0.077 4.077 10 C 0.348 3.652 11 O -0.386 6.386 12 O -0.264 6.264 13 C -0.002 4.002 14 C -0.136 4.136 15 C -0.264 4.264 16 S 0.105 5.895 17 C -0.667 4.667 18 H 0.092 0.908 19 C -0.137 4.137 20 N -0.505 5.505 21 Si 0.746 3.254 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.196 1.196 25 C -0.106 4.106 26 C -0.100 4.100 27 C -0.184 4.184 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.252 0.748 32 H 0.213 0.787 33 H 0.174 0.826 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.168 0.832 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -32.323 9.093 -0.001 33.578 hybrid contribution 2.447 0.458 0.008 2.489 sum -29.877 9.551 0.007 31.366 Atomic orbital electron populations 1.21649 0.77868 1.02497 1.02948 1.44291 1.07653 1.04571 1.76659 1.18675 0.86841 0.87592 0.85484 1.67934 1.40954 0.97459 1.25725 1.24600 0.87563 0.94516 0.87594 1.68791 1.07352 1.29911 1.20409 1.18487 0.93710 0.87651 0.95015 1.21146 0.90894 0.98823 0.94707 1.19212 0.89917 0.94456 1.04160 1.21017 0.88226 0.82504 0.73423 1.90862 1.72062 1.30715 1.44959 1.86502 1.22656 1.33819 1.83408 1.23357 0.73967 0.99962 1.02906 1.21292 0.93990 0.93948 1.04366 1.23184 0.95428 1.04342 1.03422 1.84633 1.04841 1.03157 1.96892 1.22703 0.89900 0.95384 1.58738 0.90814 1.25013 0.99703 0.94505 0.94481 1.70009 1.34219 0.99147 1.47112 0.86149 0.82538 0.78350 0.78410 1.20229 1.20722 1.19647 1.21109 0.94371 0.97638 0.97466 1.20613 0.93861 0.96664 0.98896 1.19151 0.93312 0.96293 1.09627 0.90364 0.91692 0.91685 0.74790 0.78660 0.82566 0.90869 0.90862 0.90275 0.90272 0.91672 0.91677 0.92237 0.83244 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.29 10.76 59.85 0.64 0.93 16 2 N -0.70 -3.21 5.78 -66.72 -0.39 -3.60 16 3 C 0.47 3.73 7.55 -154.97 -1.17 2.56 16 4 N -0.59 -5.21 9.67 -13.52 -0.13 -5.34 16 5 C 0.35 3.02 12.22 -92.22 -1.13 1.89 16 6 N -0.55 -5.87 10.44 -12.67 -0.13 -6.01 16 7 C 0.18 1.89 6.61 -84.87 -0.56 1.33 16 8 C -0.04 -0.40 9.58 -38.74 -0.37 -0.77 16 9 C -0.07 -0.78 5.87 -104.98 -0.62 -1.40 16 10 C 0.50 6.59 7.90 34.68 0.27 6.86 16 11 O -0.50 -7.73 16.09 -19.23 -0.31 -8.04 16 12 O -0.35 -4.54 9.43 -40.49 -0.38 -4.92 16 13 C 0.07 1.01 5.48 37.16 0.20 1.21 16 14 C -0.10 -1.52 5.60 -26.73 -0.15 -1.67 16 15 C -0.12 -2.24 5.67 37.16 0.21 -2.03 16 16 S -0.12 -3.15 21.44 -107.50 -2.30 -5.45 16 17 C -0.52 -14.69 9.50 30.94 0.29 -14.40 16 18 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 19 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 20 N -0.87 -25.63 13.22 55.49 0.73 -24.89 16 21 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.09 -0.72 9.52 -39.52 -0.38 -1.10 16 26 C -0.08 -0.54 9.51 -39.68 -0.38 -0.92 16 27 C -0.18 -1.54 5.76 -106.59 -0.61 -2.15 16 28 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.25 8.14 -51.92 -0.42 -0.18 16 31 H 0.41 0.92 7.06 -40.82 -0.29 0.63 16 32 H 0.20 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.16 1.74 7.62 -52.49 -0.40 1.34 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 39 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.15 1.06 7.57 -52.49 -0.40 0.67 16 42 H 0.13 0.43 6.55 -52.48 -0.34 0.09 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -34.75 380.19 -11.24 -45.99 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.20 Total: -2.07 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -3.83 Total: -7.72 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.09 Total: -39.83 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.69 Total: -12.96 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.30 Total: -5.45 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.75 -11.24 -45.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840653382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.846 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds