Wall clock time and date at job start Wed Apr 1 2020 04:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37846 * 119.99917 * 2 1 4 4 N 1.32570 * 120.89428 * 0.02562 * 3 2 1 5 5 C 1.32351 * 121.50068 * 179.97438 * 4 3 2 6 6 N 1.31151 * 122.96003 * 359.97438 * 5 4 3 7 7 C 1.34162 * 120.49391 * 0.02562 * 6 5 4 8 8 C 1.40101 * 121.82715 * 180.27475 * 7 6 5 9 9 C 1.38623 * 119.36229 * 180.28427 * 8 7 6 10 10 C 1.47874 * 119.73133 * 179.73453 * 9 8 7 11 11 O 1.21453 * 119.99952 * 359.72637 * 10 9 8 12 12 O 1.34698 * 120.00044 * 179.72689 * 10 9 8 13 13 C 1.45202 * 116.99692 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46867 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 S 1.80999 * 109.47017 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99745 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00485 * 0.02562 * 17 16 15 19 19 C 1.38806 * 119.99444 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00505 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99420 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47085 * 89.99665 * 21 19 17 23 23 H 1.48500 * 109.46844 * 209.99595 * 21 19 17 24 24 H 1.48495 * 109.47331 * 329.99741 * 21 19 17 25 25 C 1.40441 * 120.54022 * 359.45921 * 9 8 7 26 26 C 1.36096 * 120.76438 * 0.25310 * 25 9 8 27 27 C 1.40017 * 119.87639 * 0.02562 * 26 25 9 28 28 H 1.08997 * 109.47353 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47265 * 300.00386 * 1 2 3 30 30 H 1.09008 * 109.46692 * 60.00543 * 1 2 3 31 31 H 0.96994 * 119.99924 * 179.97438 * 2 1 3 32 32 H 1.08005 * 118.51990 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.31817 * 0.03634 * 8 7 6 34 34 H 1.09001 * 109.46860 * 60.00406 * 13 12 10 35 35 H 1.08993 * 109.47426 * 299.99768 * 13 12 10 36 36 H 1.09001 * 109.46801 * 300.00397 * 14 13 12 37 37 H 1.09001 * 109.46998 * 59.99993 * 14 13 12 38 38 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 39 39 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 40 40 H 0.96998 * 120.00447 * 180.02562 * 20 19 17 41 41 H 1.07997 * 119.61575 * 180.26801 * 25 9 8 42 42 H 1.08005 * 120.06136 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1542 1.1938 0.0000 4 7 1.5094 2.3521 0.0005 5 6 2.1589 3.5052 0.0010 6 7 3.4679 3.5868 0.0016 7 6 4.2193 2.4754 0.0011 8 6 5.6192 2.5300 0.0073 9 6 6.3456 1.3493 0.0005 10 6 7.8235 1.3974 0.0011 11 8 8.3962 2.4685 0.0025 12 8 8.5346 0.2535 0.0001 13 6 9.9814 0.3767 0.0002 14 6 10.6120 -1.0174 -0.0004 15 6 12.1365 -0.8875 0.0003 16 16 12.8824 -2.5367 0.0003 17 6 14.5895 -2.1003 0.0020 18 1 14.8811 -1.0605 0.0030 19 6 15.5595 -3.0931 0.0019 20 7 15.2042 -4.3605 0.0011 21 14 17.3694 -2.6305 0.0043 22 1 17.8474 -2.5093 1.4051 23 1 18.1499 -3.6819 -0.6959 24 1 17.5494 -1.3324 -0.6941 25 6 5.6892 0.1077 -0.0011 26 6 4.3300 0.0388 -0.0012 27 6 3.5719 1.2160 -0.0002 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.9500 -0.8400 0.0004 32 1 1.5852 4.4203 0.0018 33 1 6.1277 3.4828 0.0133 34 1 10.2998 0.9187 0.8907 35 1 10.2998 0.9203 -0.8893 36 1 10.2935 -1.5605 0.8893 37 1 10.2936 -1.5598 -0.8907 38 1 12.4552 -0.3442 -0.8892 39 1 12.4545 -0.3453 0.8908 40 1 15.8821 -5.0543 0.0015 41 1 6.2698 -0.8029 -0.0020 42 1 3.8370 -0.9222 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840653382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:04 Heat of formation + Delta-G solvation = -44.821825 kcal Electronic energy + Delta-G solvation = -25484.459838 eV Core-core repulsion = 21554.756120 eV Total energy + Delta-G solvation = -3929.703718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.47538 -41.53900 -38.76450 -37.79447 -37.68324 -34.93310 -34.58254 -33.75556 -32.82533 -31.21264 -28.59362 -27.85409 -27.30209 -25.72366 -25.50554 -23.08501 -22.73053 -22.54794 -20.37034 -19.53979 -19.23675 -18.57744 -18.40570 -17.80858 -17.57342 -16.89538 -16.46421 -16.41089 -16.21150 -15.99638 -15.85492 -15.23940 -14.96757 -14.87602 -14.76584 -14.40863 -14.21369 -14.02718 -13.81129 -13.25900 -13.23880 -13.09319 -12.96572 -12.94969 -12.63125 -12.49647 -12.41597 -12.40691 -11.91733 -11.70709 -11.54489 -11.47800 -11.14710 -10.61540 -10.35789 -10.28079 -10.26128 -8.91409 -8.66962 -8.38081 -6.14046 -1.01880 -0.49163 0.71227 1.11232 1.20449 1.36850 1.39698 1.50115 1.79339 1.92286 2.05898 2.27156 2.96639 2.99987 3.10272 3.15742 3.28257 3.37905 3.45293 3.61871 3.85639 3.92605 3.95853 4.02898 4.13582 4.22243 4.33022 4.44215 4.48148 4.58318 4.67776 4.69803 4.70238 4.96167 5.00823 5.02936 5.06449 5.08888 5.17352 5.31269 5.40373 5.41629 5.70655 5.92631 6.17895 6.49342 6.51262 7.04795 7.25522 8.71142 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.028558 B = 0.001514 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.224479 B =18490.781237 C =19439.952091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.682 5.682 3 C 0.467 3.533 4 N -0.606 5.606 5 C 0.348 3.652 6 N -0.579 5.579 7 C 0.157 3.843 8 C -0.052 4.052 9 C -0.079 4.079 10 C 0.508 3.492 11 O -0.529 6.529 12 O -0.342 6.342 13 C 0.079 3.921 14 C -0.085 4.085 15 C -0.094 4.094 16 S -0.180 6.180 17 C -0.543 4.543 18 H 0.073 0.927 19 C 0.018 3.982 20 N -0.905 5.905 21 Si 0.992 3.008 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.264 1.264 25 C -0.092 4.092 26 C -0.059 4.059 27 C -0.182 4.182 28 H 0.110 0.890 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.428 0.572 32 H 0.222 0.778 33 H 0.141 0.859 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.272 0.728 41 H 0.165 0.835 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.970 8.310 0.008 34.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.314 5.314 3 C 0.209 3.791 4 N -0.335 5.335 5 C 0.058 3.942 6 N -0.299 5.299 7 C 0.033 3.967 8 C -0.072 4.072 9 C -0.083 4.083 10 C 0.353 3.647 11 O -0.419 6.419 12 O -0.258 6.258 13 C 0.004 3.996 14 C -0.123 4.123 15 C -0.243 4.243 16 S 0.048 5.952 17 C -0.691 4.691 18 H 0.091 0.909 19 C -0.187 4.187 20 N -0.542 5.542 21 Si 0.814 3.186 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.189 1.189 25 C -0.111 4.111 26 C -0.079 4.079 27 C -0.191 4.191 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.268 0.732 32 H 0.239 0.761 33 H 0.159 0.841 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.183 0.817 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -33.812 8.257 0.005 34.805 hybrid contribution 2.679 0.696 0.007 2.768 sum -31.133 8.953 0.012 32.395 Atomic orbital electron populations 1.21809 0.76677 1.04447 1.02311 1.44439 1.08432 1.04003 1.74554 1.18885 0.86765 0.88468 0.84967 1.68020 1.40919 0.97787 1.26758 1.25154 0.87226 0.95625 0.86212 1.68793 1.08302 1.30448 1.22382 1.18611 0.93597 0.88779 0.95686 1.21039 0.91403 0.98452 0.96299 1.19148 0.88319 0.95552 1.05291 1.21442 0.89097 0.81856 0.72300 1.90846 1.72789 1.31682 1.46590 1.86482 1.22027 1.33876 1.83404 1.23135 0.74623 0.98569 1.03258 1.21104 0.91255 0.95139 1.04797 1.23082 0.97510 1.00024 1.03669 1.84571 1.04829 1.08728 1.97058 1.23072 0.91337 0.95617 1.59036 0.90865 1.26021 1.04671 0.94325 0.93708 1.70131 1.35927 1.00270 1.47845 0.85040 0.76366 0.78348 0.78814 1.19323 1.19868 1.18875 1.21275 0.95154 0.96951 0.97716 1.21022 0.93180 0.97696 0.96023 1.19326 0.94022 0.96207 1.09518 0.87167 0.92312 0.92304 0.73227 0.76147 0.84075 0.90609 0.90605 0.89878 0.89876 0.91388 0.91371 0.91892 0.81720 0.80581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.30 10.76 127.77 1.37 1.67 16 2 N -0.68 -4.12 5.78 -365.00 -2.11 -6.23 16 3 C 0.47 6.49 7.55 134.07 1.01 7.51 16 4 N -0.61 -9.92 9.67 -196.68 -1.90 -11.82 16 5 C 0.35 5.90 12.22 180.91 2.21 8.11 16 6 N -0.58 -12.75 10.44 -193.99 -2.03 -14.78 16 7 C 0.16 3.40 6.61 40.07 0.26 3.67 16 8 C -0.05 -1.19 9.58 22.81 0.22 -0.98 16 9 C -0.08 -1.68 5.87 -20.10 -0.12 -1.80 16 10 C 0.51 13.24 7.90 70.37 0.56 13.79 16 11 O -0.53 -16.82 16.09 19.99 0.32 -16.50 16 12 O -0.34 -8.58 9.43 -56.07 -0.53 -9.11 16 13 C 0.08 2.12 5.48 71.98 0.39 2.51 16 14 C -0.08 -2.54 5.60 30.60 0.17 -2.37 16 15 C -0.09 -3.61 5.67 71.98 0.41 -3.20 16 16 S -0.18 -9.31 21.44 -56.49 -1.21 -10.52 16 17 C -0.54 -30.93 9.50 67.96 0.65 -30.28 16 18 H 0.07 4.03 7.80 -2.91 -0.02 4.00 16 19 C 0.02 1.01 5.49 84.86 0.47 1.48 16 20 N -0.91 -53.79 13.22 21.65 0.29 -53.51 16 21 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 25 C -0.09 -1.35 9.52 22.31 0.21 -1.14 16 26 C -0.06 -0.64 9.51 22.20 0.21 -0.43 16 27 C -0.18 -2.92 5.76 -21.14 -0.12 -3.05 16 28 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.43 0.12 7.06 -92.71 -0.65 -0.53 16 32 H 0.22 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.14 3.49 7.62 -2.91 -0.02 3.47 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 39 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 40 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.17 1.90 7.57 -2.91 -0.02 1.88 16 42 H 0.18 0.31 6.55 -2.91 -0.02 0.29 16 Total: -1.00 -76.85 380.19 3.18 -73.68 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.41 Total: 7.75 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 7.91 Total: -4.51 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -5.75 Total: -86.34 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.21 Total: -25.61 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -1.21 Total: -10.52 kcal Total: -76.85 3.18 -73.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840653382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.856 kcal (2) G-P(sol) polarization free energy of solvation -76.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds