Wall clock time and date at job start Wed Apr 1 2020 04:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99858 * 2 1 4 4 H 1.09004 * 109.47341 * 29.99785 * 3 2 1 5 5 C 1.52998 * 109.47359 * 149.99893 * 3 2 1 6 6 C 1.50702 * 109.46968 * 294.99722 * 5 3 2 7 7 O 1.21277 * 119.99935 * 0.02562 * 6 5 3 8 8 N 1.34776 * 120.00075 * 179.97438 * 6 5 3 9 9 C 1.46505 * 119.99973 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47049 * 180.02562 * 9 8 6 11 11 C 1.38303 * 119.92922 * 269.72893 * 10 9 8 12 12 C 1.38098 * 120.06960 * 179.72582 * 11 10 9 13 13 C 1.38886 * 119.92979 * 0.56807 * 12 11 10 14 14 O 1.35747 * 120.07290 * 179.68382 * 13 12 11 15 15 C 1.34826 * 117.00113 * 174.48427 * 14 13 12 16 16 H 1.07998 * 120.00175 * 5.05751 * 15 14 13 17 17 C 1.38653 * 119.99923 * 185.05701 * 15 14 13 18 18 N 1.31558 * 120.00349 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00090 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46832 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99866 * 19 17 15 22 22 H 1.48501 * 109.47183 * 239.99999 * 19 17 15 23 23 C 1.38877 * 119.85902 * 359.70210 * 13 12 11 24 24 C 1.38100 * 119.93347 * 0.02562 * 23 13 12 25 25 C 1.53000 * 109.47021 * 269.99838 * 3 2 1 26 26 F 1.39897 * 109.47484 * 59.99872 * 25 3 2 27 27 F 1.39894 * 109.47342 * 299.99903 * 25 3 2 28 28 F 1.39902 * 109.47209 * 179.97438 * 25 3 2 29 29 H 1.08998 * 109.47616 * 300.00301 * 1 2 3 30 30 H 1.09001 * 109.47259 * 60.00398 * 1 2 3 31 31 H 1.09003 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46970 * 54.99798 * 5 3 2 33 33 H 1.09001 * 109.47167 * 174.99866 * 5 3 2 34 34 H 0.96995 * 119.99773 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47101 * 300.00473 * 9 8 6 36 36 H 1.09001 * 109.47153 * 60.00307 * 9 8 6 37 37 H 1.08003 * 119.96511 * 359.97438 * 11 10 9 38 38 H 1.07993 * 120.04020 * 180.27457 * 12 11 10 39 39 H 0.96996 * 120.00152 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.03405 * 179.97438 * 23 13 12 41 41 H 1.08003 * 119.96935 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3588 1.2633 0.7213 6 6 3.1415 0.9238 2.1733 7 8 2.0186 0.7337 2.5901 8 7 4.1951 0.8303 3.0086 9 6 3.9838 0.4996 4.4201 10 6 5.3122 0.4583 5.1306 11 6 6.0195 -0.7280 5.2028 12 6 7.2397 -0.7679 5.8482 13 6 7.7509 0.3822 6.4354 14 8 8.9471 0.3447 7.0762 15 6 9.4387 1.5177 7.5238 16 1 8.8485 2.4181 7.4390 17 6 10.7020 1.5678 8.0930 18 7 11.4208 0.4709 8.1968 19 14 11.3829 3.1928 8.7138 20 1 10.3847 4.2679 8.4838 21 1 11.6694 3.0866 10.1670 22 1 12.6357 3.5155 7.9846 23 6 7.0357 1.5705 6.3660 24 6 5.8186 1.6053 5.7142 25 6 2.2176 1.7713 -1.4425 26 9 0.9845 1.8099 -2.1021 27 9 3.0715 0.8808 -2.1020 28 9 2.7861 3.0496 -1.4426 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9930 0.5052 0.2618 33 1 3.8426 2.2371 0.6443 34 1 5.0932 0.9820 2.6751 35 1 3.3497 1.2577 4.8799 36 1 3.5000 -0.4741 4.4967 37 1 5.6189 -1.6232 4.7504 38 1 7.7936 -1.6935 5.9005 39 1 12.3047 0.5060 8.5947 40 1 7.4304 2.4665 6.8220 41 1 5.2617 2.5290 5.6603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845420135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:42 Heat of formation + Delta-G solvation = -240.906904 kcal Electronic energy + Delta-G solvation = -29540.329010 eV Core-core repulsion = 24585.220043 eV Total energy + Delta-G solvation = -4955.108968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.49622 -48.04296 -47.93948 -40.10029 -39.16406 -38.27864 -36.88942 -34.49277 -32.95836 -32.38995 -30.34491 -30.07771 -27.65193 -26.85830 -25.81669 -24.65658 -22.73763 -22.09905 -20.69555 -20.59384 -19.09670 -18.96201 -18.45774 -18.11697 -17.27072 -17.01517 -16.65790 -16.22620 -15.46930 -15.29157 -14.90398 -14.75863 -14.69657 -14.66352 -14.58090 -14.38734 -14.31710 -14.11684 -14.09968 -13.75952 -13.69615 -13.44559 -13.07810 -12.83294 -12.62676 -12.57390 -12.20744 -12.06574 -11.72888 -11.65844 -11.44525 -11.02862 -10.83675 -10.72771 -10.50638 -10.27967 -10.04480 -9.46441 -9.06858 -8.94947 -8.33107 -7.37203 -6.56428 -4.15354 1.98282 2.08711 2.22041 2.50313 2.93251 3.03146 3.07131 3.11312 3.12903 3.36048 3.63900 3.87361 3.88618 4.26401 4.41162 4.47665 4.76860 4.91278 4.94975 4.98235 5.09700 5.12721 5.18261 5.21046 5.36668 5.40174 5.61213 5.75176 5.85509 6.08146 6.30398 6.39672 6.42005 6.55657 6.75947 6.91548 7.09822 7.22429 7.31300 7.46387 7.67355 7.88234 8.10776 8.88947 9.56794 10.61051 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.001823 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.509612 B =15357.949880 C =15987.612218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.347 6.347 3 C 0.070 3.930 4 H 0.115 0.885 5 C -0.149 4.149 6 C 0.520 3.480 7 O -0.540 6.540 8 N -0.719 5.719 9 C 0.180 3.820 10 C -0.217 4.217 11 C -0.054 4.054 12 C -0.195 4.195 13 C 0.161 3.839 14 O -0.173 6.173 15 C -0.393 4.393 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.858 5.858 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.237 4.237 24 C -0.050 4.050 25 C 0.429 3.571 26 F -0.182 7.182 27 F -0.174 7.174 28 F -0.180 7.180 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.404 0.596 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.271 0.729 40 H 0.128 0.872 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.853 3.018 -16.740 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.264 6.264 3 C 0.009 3.991 4 H 0.133 0.867 5 C -0.189 4.189 6 C 0.306 3.694 7 O -0.417 6.417 8 N -0.371 5.371 9 C 0.058 3.942 10 C -0.218 4.218 11 C -0.072 4.072 12 C -0.215 4.215 13 C 0.106 3.894 14 O -0.075 6.075 15 C -0.469 4.469 16 H 0.112 0.888 17 C -0.165 4.165 18 N -0.492 5.492 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.200 1.200 23 C -0.257 4.257 24 C -0.069 4.069 25 C 0.374 3.626 26 F -0.164 7.164 27 F -0.156 7.156 28 F -0.161 7.161 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.238 0.762 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.146 0.854 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.155 2.452 -16.288 24.514 hybrid contribution 0.717 1.214 -0.143 1.417 sum -17.438 3.666 -16.432 24.239 Atomic orbital electron populations 1.23081 0.79376 1.03948 1.01037 1.88058 1.21401 1.23139 1.93814 1.22907 0.98424 0.89769 0.88046 0.86732 1.21839 0.96305 1.06394 0.94406 1.19998 0.85165 0.77288 0.86998 1.90698 1.23257 1.50000 1.77757 1.46307 1.09558 1.70941 1.10255 1.19991 0.94628 1.00731 0.78810 1.19192 0.98374 0.94828 1.09455 1.20537 0.93342 0.96488 0.96880 1.20225 0.98060 0.97556 1.05610 1.19447 0.86878 0.93283 0.89811 1.83978 1.28483 1.33692 1.61364 1.21405 1.00443 0.85338 1.39748 0.88843 1.25332 0.95108 0.99274 0.96793 1.70043 1.11139 1.27232 1.40834 0.85624 0.79140 0.79877 0.78657 1.19036 1.20055 1.20039 1.21161 0.97296 0.99092 1.08104 1.20635 0.94560 0.96517 0.95203 1.21526 0.74179 0.75428 0.91476 1.93162 1.43407 1.96194 1.83612 1.93203 1.70925 1.68071 1.83371 1.93200 1.85215 1.40726 1.96968 0.92460 0.93204 0.88734 0.86505 0.86243 0.76187 0.91525 0.91427 0.86930 0.86353 0.91887 0.85405 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.70 101.05 1.08 1.25 16 2 O -0.35 -3.55 9.51 -49.66 -0.47 -4.03 16 3 C 0.07 0.60 1.72 -26.73 -0.05 0.56 16 4 H 0.11 0.90 7.60 -51.93 -0.39 0.51 16 5 C -0.15 -1.19 5.17 -27.88 -0.14 -1.34 16 6 C 0.52 5.78 7.71 -10.98 -0.08 5.69 16 7 O -0.54 -7.68 15.42 -8.87 -0.14 -7.82 16 8 N -0.72 -7.86 5.55 -61.47 -0.34 -8.20 16 9 C 0.18 2.31 5.80 -5.19 -0.03 2.28 16 10 C -0.22 -3.28 5.25 -104.58 -0.55 -3.83 16 11 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 12 C -0.20 -3.82 9.99 -39.39 -0.39 -4.21 16 13 C 0.16 3.64 6.65 -39.11 -0.26 3.38 16 14 O -0.17 -4.71 9.76 0.07 0.00 -4.71 16 15 C -0.39 -10.52 9.49 30.89 0.29 -10.22 16 16 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -24.35 13.67 55.48 0.76 -23.59 16 19 Si 0.94 19.73 29.55 -169.99 -5.02 14.71 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 C -0.24 -4.75 9.17 -39.40 -0.36 -5.12 16 24 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 25 C 0.43 3.71 2.85 37.16 0.11 3.82 16 26 F -0.18 -1.65 15.50 2.25 0.03 -1.61 16 27 F -0.17 -1.69 16.83 2.25 0.04 -1.65 16 28 F -0.18 -1.52 16.71 2.25 0.04 -1.49 16 29 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.05 0.34 6.49 -51.93 -0.34 0.00 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.12 0.83 7.94 -51.93 -0.41 0.42 16 33 H 0.12 0.68 7.66 -51.93 -0.40 0.28 16 34 H 0.40 3.82 8.46 -40.82 -0.35 3.48 16 35 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 38 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.13 2.59 5.64 -52.49 -0.30 2.30 16 41 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -31.24 367.08 -5.37 -36.60 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.54 Total: 5.48 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -1.25 Total: -9.23 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.42 Total: -31.79 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.61 Total: -16.55 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.11 Total: -4.75 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.24 -5.37 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845420135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.303 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds