Wall clock time and date at job start Wed Apr 1 2020 04:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99858 * 2 1 4 4 H 1.09004 * 109.47341 * 29.99785 * 3 2 1 5 5 C 1.52998 * 109.47359 * 149.99893 * 3 2 1 6 6 C 1.50702 * 109.46968 * 294.99722 * 5 3 2 7 7 O 1.21277 * 119.99935 * 0.02562 * 6 5 3 8 8 N 1.34776 * 120.00075 * 179.97438 * 6 5 3 9 9 C 1.46505 * 119.99973 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47049 * 180.02562 * 9 8 6 11 11 C 1.38303 * 119.92922 * 269.72893 * 10 9 8 12 12 C 1.38098 * 120.06960 * 179.72582 * 11 10 9 13 13 C 1.38886 * 119.92979 * 0.56807 * 12 11 10 14 14 O 1.35747 * 120.07290 * 179.68382 * 13 12 11 15 15 C 1.34826 * 117.00113 * 174.48427 * 14 13 12 16 16 H 1.07998 * 120.00175 * 5.05751 * 15 14 13 17 17 C 1.38653 * 119.99923 * 185.05701 * 15 14 13 18 18 N 1.31558 * 120.00349 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00090 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46832 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99866 * 19 17 15 22 22 H 1.48501 * 109.47183 * 239.99999 * 19 17 15 23 23 C 1.38877 * 119.85902 * 359.70210 * 13 12 11 24 24 C 1.38100 * 119.93347 * 0.02562 * 23 13 12 25 25 C 1.53000 * 109.47021 * 269.99838 * 3 2 1 26 26 F 1.39897 * 109.47484 * 59.99872 * 25 3 2 27 27 F 1.39894 * 109.47342 * 299.99903 * 25 3 2 28 28 F 1.39902 * 109.47209 * 179.97438 * 25 3 2 29 29 H 1.08998 * 109.47616 * 300.00301 * 1 2 3 30 30 H 1.09001 * 109.47259 * 60.00398 * 1 2 3 31 31 H 1.09003 * 109.47065 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46970 * 54.99798 * 5 3 2 33 33 H 1.09001 * 109.47167 * 174.99866 * 5 3 2 34 34 H 0.96995 * 119.99773 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47101 * 300.00473 * 9 8 6 36 36 H 1.09001 * 109.47153 * 60.00307 * 9 8 6 37 37 H 1.08003 * 119.96511 * 359.97438 * 11 10 9 38 38 H 1.07993 * 120.04020 * 180.27457 * 12 11 10 39 39 H 0.96996 * 120.00152 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.03405 * 179.97438 * 23 13 12 41 41 H 1.08003 * 119.96935 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3588 1.2633 0.7213 6 6 3.1415 0.9238 2.1733 7 8 2.0186 0.7337 2.5901 8 7 4.1951 0.8303 3.0086 9 6 3.9838 0.4996 4.4201 10 6 5.3122 0.4583 5.1306 11 6 6.0195 -0.7280 5.2028 12 6 7.2397 -0.7679 5.8482 13 6 7.7509 0.3822 6.4354 14 8 8.9471 0.3447 7.0762 15 6 9.4387 1.5177 7.5238 16 1 8.8485 2.4181 7.4390 17 6 10.7020 1.5678 8.0930 18 7 11.4208 0.4709 8.1968 19 14 11.3829 3.1928 8.7138 20 1 10.3847 4.2679 8.4838 21 1 11.6694 3.0866 10.1670 22 1 12.6357 3.5155 7.9846 23 6 7.0357 1.5705 6.3660 24 6 5.8186 1.6053 5.7142 25 6 2.2176 1.7713 -1.4425 26 9 0.9845 1.8099 -2.1021 27 9 3.0715 0.8808 -2.1020 28 9 2.7861 3.0496 -1.4426 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9930 0.5052 0.2618 33 1 3.8426 2.2371 0.6443 34 1 5.0932 0.9820 2.6751 35 1 3.3497 1.2577 4.8799 36 1 3.5000 -0.4741 4.4967 37 1 5.6189 -1.6232 4.7504 38 1 7.7936 -1.6935 5.9005 39 1 12.3047 0.5060 8.5947 40 1 7.4304 2.4665 6.8220 41 1 5.2617 2.5290 5.6603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845420135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:41 Heat of formation + Delta-G solvation = -261.069428 kcal Electronic energy + Delta-G solvation = -29541.203323 eV Core-core repulsion = 24585.220043 eV Total energy + Delta-G solvation = -4955.983280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.17652 -48.71812 -48.63396 -41.09177 -40.63810 -39.09632 -38.39559 -35.61591 -34.27750 -33.63922 -31.82955 -31.39513 -28.54323 -27.50715 -27.47528 -25.96286 -23.63485 -23.48360 -22.13282 -21.45881 -19.88644 -19.77358 -19.66727 -19.13190 -18.87571 -17.83082 -17.56631 -17.12951 -16.59205 -16.32886 -16.05224 -16.02536 -15.70425 -15.53446 -15.52531 -15.38231 -15.36114 -15.09506 -15.01611 -14.82789 -14.78954 -14.56070 -14.33933 -14.21787 -13.77334 -13.50357 -13.27296 -13.06659 -13.01427 -12.80921 -12.56128 -12.34610 -12.29421 -12.21544 -12.08721 -11.18799 -11.03521 -10.93495 -10.78362 -10.03461 -9.79507 -8.99747 -8.47953 -6.16041 0.55526 0.59218 1.36583 1.43506 1.51981 1.54378 1.65823 2.17186 2.23226 2.30467 2.67587 2.81574 2.95390 3.19491 3.23272 3.49763 3.59859 3.80005 3.88694 4.04793 4.07989 4.18957 4.34801 4.38855 4.48887 4.51986 4.58197 4.60566 4.79356 4.82657 4.83448 5.06011 5.15502 5.28230 5.45136 5.54363 5.70541 5.76452 5.79127 6.02336 6.17748 6.58818 6.97123 7.25030 7.76843 8.75098 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.001823 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.509612 B =15357.949880 C =15987.612218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.367 6.367 3 C 0.068 3.932 4 H 0.122 0.878 5 C -0.145 4.145 6 C 0.523 3.477 7 O -0.571 6.571 8 N -0.715 5.715 9 C 0.186 3.814 10 C -0.182 4.182 11 C -0.044 4.044 12 C -0.206 4.206 13 C 0.121 3.879 14 O -0.230 6.230 15 C -0.412 4.412 16 H 0.104 0.896 17 C -0.023 4.023 18 N -0.919 5.919 19 Si 1.018 2.982 20 H -0.250 1.250 21 H -0.271 1.271 22 H -0.269 1.269 23 C -0.244 4.244 24 C -0.044 4.044 25 C 0.433 3.567 26 F -0.185 7.185 27 F -0.181 7.181 28 F -0.177 7.177 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.146 0.854 34 H 0.413 0.587 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.147 0.853 38 H 0.113 0.887 39 H 0.273 0.727 40 H 0.120 0.880 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.142 4.439 -18.369 27.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.285 6.285 3 C 0.007 3.993 4 H 0.139 0.861 5 C -0.184 4.184 6 C 0.310 3.690 7 O -0.450 6.450 8 N -0.367 5.367 9 C 0.063 3.937 10 C -0.183 4.183 11 C -0.062 4.062 12 C -0.225 4.225 13 C 0.070 3.930 14 O -0.136 6.136 15 C -0.488 4.488 16 H 0.122 0.878 17 C -0.221 4.221 18 N -0.557 5.557 19 Si 0.838 3.162 20 H -0.173 1.173 21 H -0.196 1.196 22 H -0.194 1.194 23 C -0.263 4.263 24 C -0.063 4.063 25 C 0.378 3.622 26 F -0.167 7.167 27 F -0.162 7.162 28 F -0.159 7.159 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.249 0.751 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.164 0.836 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.495 3.879 -17.962 27.527 hybrid contribution 1.037 0.680 0.137 1.247 sum -19.459 4.558 -17.825 26.780 Atomic orbital electron populations 1.23179 0.78529 1.04702 1.01279 1.88024 1.22463 1.24115 1.93897 1.22994 0.98871 0.89452 0.87951 0.86084 1.21881 0.96364 1.08221 0.91952 1.20401 0.84411 0.76271 0.87964 1.90697 1.24485 1.51319 1.78504 1.46118 1.10250 1.70911 1.09401 1.19871 0.92651 1.01438 0.79723 1.19512 0.98418 0.93731 1.06647 1.20887 0.91712 0.98266 0.95378 1.20455 0.99429 0.96668 1.05946 1.20010 0.86448 0.95395 0.91099 1.83948 1.30967 1.34255 1.64457 1.21868 1.01078 0.85896 1.39919 0.87830 1.26589 0.95224 1.03300 0.96972 1.70185 1.11895 1.29971 1.43680 0.84530 0.78550 0.75204 0.77951 1.17307 1.19566 1.19414 1.21252 0.98517 0.97924 1.08635 1.20953 0.93167 0.98420 0.93754 1.21509 0.73921 0.75345 0.91392 1.93156 1.43631 1.96204 1.83702 1.93192 1.71129 1.68347 1.83551 1.93206 1.85160 1.40564 1.96954 0.92779 0.92347 0.87859 0.85373 0.83584 0.75072 0.90857 0.91020 0.83573 0.86853 0.91832 0.86242 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.70 113.37 1.21 1.48 16 2 O -0.37 -6.75 9.51 -135.19 -1.29 -8.03 16 3 C 0.07 1.00 1.72 30.59 0.05 1.06 16 4 H 0.12 1.61 7.60 -2.39 -0.02 1.59 16 5 C -0.14 -1.81 5.17 29.85 0.15 -1.65 16 6 C 0.52 9.77 7.71 87.66 0.68 10.44 16 7 O -0.57 -14.57 15.42 10.77 0.17 -14.40 16 8 N -0.71 -12.68 5.55 -466.78 -2.59 -15.27 16 9 C 0.19 3.97 5.80 85.63 0.50 4.46 16 10 C -0.18 -4.84 5.25 -19.83 -0.10 -4.94 16 11 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 12 C -0.21 -8.05 9.99 22.39 0.22 -7.83 16 13 C 0.12 5.66 6.65 22.58 0.15 5.81 16 14 O -0.23 -13.30 9.76 -22.67 -0.22 -13.52 16 15 C -0.41 -23.05 9.49 67.92 0.64 -22.41 16 16 H 0.10 5.28 5.20 -2.91 -0.02 5.27 16 17 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 18 N -0.92 -55.14 13.67 21.61 0.30 -54.84 16 19 Si 1.02 41.48 29.55 68.60 2.03 43.51 16 20 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 23 C -0.24 -9.70 9.17 22.39 0.21 -9.49 16 24 C -0.04 -1.33 9.69 22.25 0.22 -1.12 16 25 C 0.43 6.49 2.85 71.98 0.21 6.69 16 26 F -0.19 -3.00 15.50 44.97 0.70 -2.31 16 27 F -0.18 -3.11 16.83 44.97 0.76 -2.35 16 28 F -0.18 -2.54 16.71 44.97 0.75 -1.79 16 29 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 30 H 0.06 0.70 6.49 -2.39 -0.02 0.69 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.13 1.37 7.94 -2.39 -0.02 1.35 16 33 H 0.15 1.05 7.66 -2.39 -0.02 1.03 16 34 H 0.41 6.03 8.46 -92.71 -0.78 5.25 16 35 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 36 H 0.07 1.56 8.08 -2.39 -0.02 1.55 16 37 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 38 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 39 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.12 4.89 5.64 -2.91 -0.02 4.87 16 41 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -72.13 367.08 5.73 -66.40 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.32 Total: 21.99 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 4.81 Total: -19.39 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -2.29 Total: -70.11 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.34 Total: -35.95 kcal Atomic # 9 Polarization: -8.66 SS G_CDS: 2.21 Total: -6.45 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -72.13 5.73 -66.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845420135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.669 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds