Wall clock time and date at job start Wed Apr 1 2020 04:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.32215 * 119.81625 * 2 1 4 4 O 1.21251 * 122.89675 * 0.02562 * 3 2 1 5 5 C 1.51119 * 114.19891 * 180.26160 * 3 2 1 6 6 S 1.82384 * 103.49549 * 359.74706 * 5 3 2 7 7 C 1.36750 * 119.81756 * 179.77547 * 2 1 3 8 8 C 1.36439 * 126.26282 * 0.02987 * 7 2 1 9 9 C 1.40396 * 120.00612 * 8.30515 * 8 7 2 10 10 O 1.21910 * 119.99617 * 54.57570 * 9 8 7 11 11 N 1.34774 * 120.00333 * 234.57946 * 9 8 7 12 12 C 1.46493 * 119.99944 * 354.18180 * 11 9 8 13 13 C 1.50697 * 109.47469 * 259.96618 * 12 11 9 14 14 H 1.08005 * 120.00038 * 235.39211 * 13 12 11 15 15 C 1.37871 * 120.00148 * 55.39487 * 13 12 11 16 16 N 1.31510 * 120.00106 * 5.31227 * 15 13 12 17 17 Si 1.86807 * 120.00081 * 185.31977 * 15 13 12 18 18 H 1.48502 * 109.47347 * 59.99667 * 17 15 13 19 19 H 1.48504 * 109.47084 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46993 * 299.99394 * 17 15 13 21 21 C 1.46502 * 119.99869 * 174.18955 * 11 9 8 22 22 C 1.50696 * 109.47056 * 269.99226 * 21 11 9 23 23 C 1.38228 * 119.61505 * 94.73050 * 22 21 11 24 24 C 1.38631 * 119.16005 * 179.75565 * 23 22 21 25 25 C 1.38671 * 118.42234 * 0.51054 * 24 23 22 26 26 C 1.38188 * 119.15990 * 359.72864 * 25 24 23 27 27 N 1.31853 * 119.62046 * 275.00608 * 22 21 11 28 28 H 1.09002 * 109.47004 * 212.23576 * 1 2 3 29 29 H 1.08999 * 109.46736 * 332.23047 * 1 2 3 30 30 H 1.08996 * 109.46994 * 92.22832 * 1 2 3 31 31 H 1.09003 * 110.61189 * 241.25181 * 5 3 2 32 32 H 1.09000 * 110.61944 * 118.25702 * 5 3 2 33 33 H 1.08007 * 120.00168 * 188.30187 * 8 7 2 34 34 H 1.09000 * 109.46874 * 139.96185 * 12 11 9 35 35 H 1.09002 * 109.47163 * 19.96612 * 12 11 9 36 36 H 0.97003 * 120.00485 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.47318 * 29.99794 * 21 11 9 38 38 H 1.09006 * 109.46877 * 149.99460 * 21 11 9 39 39 H 1.08000 * 120.42015 * 359.97438 * 23 22 21 40 40 H 1.08001 * 120.78563 * 180.21597 * 24 23 22 41 41 H 1.07991 * 120.42056 * 179.71170 * 25 24 23 42 42 H 1.08002 * 119.61569 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1225 1.1471 0.0000 4 8 1.5666 2.2247 0.0005 5 6 3.6264 0.9992 -0.0063 6 16 3.8764 -0.8074 -0.0036 7 6 2.1450 -1.1865 0.0046 8 6 1.5918 -2.4337 0.0090 9 6 0.2075 -2.5883 -0.1667 10 8 -0.3414 -2.1019 -1.1405 11 7 -0.5145 -3.2744 0.7412 12 6 0.1601 -3.9664 1.8421 13 6 0.2766 -5.4333 1.5173 14 1 -0.1172 -6.1707 2.2012 15 6 0.8859 -5.8340 0.3473 16 7 1.4576 -4.9444 -0.4345 17 14 0.8992 -7.6407 -0.1276 18 1 -0.4973 -8.1266 -0.2656 19 1 1.6109 -7.8075 -1.4203 20 1 1.5942 -8.4241 0.9252 21 6 -1.9741 -3.3284 0.6269 22 6 -2.5804 -2.1774 1.3876 23 6 -2.8938 -1.0077 0.7211 24 6 -3.4559 0.0433 1.4292 25 6 -3.6728 -0.1183 2.7892 26 6 -3.3292 -1.3152 3.3883 27 7 -2.8007 -2.2958 2.6822 28 1 -0.3633 -0.8693 0.5482 29 1 -0.3633 0.9093 0.4788 30 1 -0.3633 -0.0400 -1.0269 31 1 4.0598 1.4480 0.8875 32 1 4.0521 1.4443 -0.9056 33 1 2.2189 -3.3021 0.1475 34 1 -0.4177 -3.8417 2.7579 35 1 1.1557 -3.5447 1.9805 36 1 1.8860 -5.2263 -1.2580 37 1 -2.2592 -3.2605 -0.4230 38 1 -2.3364 -4.2691 1.0417 39 1 -2.7064 -0.9150 -0.3384 40 1 -3.7142 0.9678 0.9341 41 1 -4.1045 0.6812 3.3729 42 1 -3.4946 -1.4489 4.4472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874358325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:53 Heat of formation + Delta-G solvation = 31.401214 kcal Electronic energy + Delta-G solvation = -29471.237106 eV Core-core repulsion = 25544.838667 eV Total energy + Delta-G solvation = -3926.398439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88171 -40.02009 -38.90399 -36.33958 -34.94010 -33.02518 -32.19310 -31.47131 -31.03458 -30.39732 -27.74448 -26.97649 -25.81703 -23.34246 -23.24308 -22.86523 -21.66561 -20.15813 -18.27063 -17.93507 -17.01223 -16.51306 -16.34089 -16.20689 -15.88783 -15.72464 -15.31168 -15.13282 -14.76494 -14.46208 -14.14469 -13.78586 -13.66759 -13.23996 -13.05273 -12.91162 -12.67490 -12.58908 -12.52705 -12.15288 -11.74334 -11.51895 -11.28276 -11.11105 -11.00354 -10.95181 -10.85786 -10.62354 -10.03712 -9.96222 -9.85980 -9.67531 -9.23310 -9.05291 -8.74349 -8.65461 -8.48718 -7.51520 -7.07780 -6.27629 -4.46063 1.27629 1.45661 1.47930 1.62146 1.97834 2.81435 3.05246 3.17850 3.25904 3.26999 3.83136 3.96169 4.17825 4.22397 4.46230 4.62799 4.92471 4.96568 5.01210 5.09885 5.17993 5.24365 5.36348 5.54221 5.68836 5.79836 5.82499 5.88156 6.00110 6.19366 6.25132 6.35467 6.41311 6.49107 6.67395 6.74489 6.90455 7.02931 7.07902 7.39689 7.57837 7.71402 7.84888 7.96688 8.26216 8.56135 8.66362 9.21920 9.33479 10.68254 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007636 B = 0.006413 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3665.960908 B = 4365.195519 C = 7325.165017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.532 5.532 3 C 0.515 3.485 4 O -0.517 6.517 5 C -0.139 4.139 6 S -0.091 6.091 7 C 0.070 3.930 8 C -0.123 4.123 9 C 0.594 3.406 10 O -0.591 6.591 11 N -0.573 5.573 12 C 0.226 3.774 13 C -0.528 4.528 14 H 0.064 0.936 15 C 0.074 3.926 16 N -0.883 5.883 17 Si 0.901 3.099 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.166 3.834 22 C 0.123 3.877 23 C -0.158 4.158 24 C -0.081 4.081 25 C -0.183 4.183 26 C 0.094 3.906 27 N -0.468 5.468 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.211 0.789 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.272 0.728 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 8.802 3.364 9.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.254 5.254 3 C 0.302 3.698 4 O -0.394 6.394 5 C -0.291 4.291 6 S 0.146 5.854 7 C -0.137 4.137 8 C -0.157 4.157 9 C 0.386 3.614 10 O -0.477 6.477 11 N -0.303 5.303 12 C 0.107 3.893 13 C -0.566 4.566 14 H 0.083 0.917 15 C -0.128 4.128 16 N -0.521 5.521 17 Si 0.729 3.271 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.041 3.959 22 C -0.017 4.017 23 C -0.178 4.178 24 C -0.108 4.108 25 C -0.203 4.203 26 C -0.064 4.064 27 N -0.177 5.177 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.226 0.774 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.970 8.226 3.158 8.865 hybrid contribution -1.265 0.457 -0.757 1.544 sum -2.235 8.684 2.401 9.283 Atomic orbital electron populations 1.22707 0.76757 1.03034 1.04490 1.44490 1.09391 1.04862 1.66650 1.19667 0.89048 0.83948 0.77179 1.90745 1.72119 1.26383 1.50163 1.24239 0.96991 0.98346 1.09492 1.86546 1.02936 1.01506 1.94369 1.22015 0.92662 0.87988 1.11014 1.22869 0.98205 0.94438 1.00168 1.16082 0.86668 0.76205 0.82476 1.90759 1.73160 1.52597 1.31161 1.48477 1.03837 1.49005 1.28979 1.19439 0.92942 0.91983 0.84960 1.21588 1.36954 0.92255 1.05823 0.91739 1.25038 0.93559 0.98193 0.96051 1.69450 1.35798 1.33296 1.13600 0.86496 0.78421 0.84327 0.77867 1.20156 1.21061 1.20048 1.20004 0.82367 0.94709 0.98811 1.22073 0.93782 0.95632 0.90163 1.22180 0.99611 0.93942 1.02110 1.21568 0.96193 0.98694 0.94302 1.22070 1.03079 0.99366 0.95760 1.22748 0.94529 0.89161 0.99947 1.67595 1.11098 1.31564 1.07475 0.89175 0.91679 0.89376 0.84734 0.84613 0.77363 0.94355 0.94046 0.91759 0.89383 0.88888 0.84405 0.85264 0.85369 0.83184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 7.61 59.85 0.46 1.82 16 2 N -0.53 -9.82 2.95 -122.27 -0.36 -10.18 16 3 C 0.51 8.74 7.79 -11.91 -0.09 8.65 16 4 O -0.52 -9.81 16.90 5.58 0.09 -9.71 16 5 C -0.14 -1.79 7.36 36.21 0.27 -1.52 16 6 S -0.09 -1.40 23.35 -107.50 -2.51 -3.91 16 7 C 0.07 1.34 7.00 -16.01 -0.11 1.23 16 8 C -0.12 -2.63 6.86 -39.42 -0.27 -2.90 16 9 C 0.59 13.10 2.92 -15.45 -0.05 13.06 16 10 O -0.59 -13.68 13.19 5.00 0.07 -13.61 16 11 N -0.57 -12.23 2.09 -180.25 -0.38 -12.61 16 12 C 0.23 5.01 5.61 -5.20 -0.03 4.99 16 13 C -0.53 -12.62 9.43 -34.44 -0.32 -12.95 16 14 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 15 C 0.07 1.78 5.33 -17.82 -0.10 1.69 16 16 N -0.88 -21.50 7.73 55.43 0.43 -21.08 16 17 Si 0.90 19.37 29.54 -169.99 -5.02 14.35 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 C 0.17 3.20 5.74 -5.19 -0.03 3.17 16 22 C 0.12 2.11 5.87 -82.59 -0.49 1.62 16 23 C -0.16 -2.41 7.75 -39.44 -0.31 -2.72 16 24 C -0.08 -1.04 10.18 -39.28 -0.40 -1.44 16 25 C -0.18 -2.19 10.11 -39.44 -0.40 -2.59 16 26 C 0.09 1.27 11.18 -17.55 -0.20 1.08 16 27 N -0.47 -7.89 10.27 -9.47 -0.10 -7.98 16 28 H 0.09 1.75 3.22 -51.93 -0.17 1.59 16 29 H 0.06 1.14 7.42 -51.93 -0.39 0.75 16 30 H 0.09 1.71 6.77 -51.93 -0.35 1.36 16 31 H 0.13 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.14 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.21 4.79 5.18 -52.48 -0.27 4.52 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.95 6.34 -51.93 -0.33 0.62 16 36 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.09 1.71 7.25 -51.93 -0.38 1.33 16 38 H 0.09 1.82 8.07 -51.93 -0.42 1.40 16 39 H 0.14 2.13 8.02 -52.49 -0.42 1.71 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -27.97 355.11 -9.29 -37.26 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -4.80 Total: 8.93 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: -2.06 Total: 13.19 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.41 Total: -51.85 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.16 Total: -23.33 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.51 Total: -3.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.97 -9.29 -37.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874358325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.660 kcal (2) G-P(sol) polarization free energy of solvation -27.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds