Wall clock time and date at job start Wed Apr 1 2020 04:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.32215 * 119.81625 * 2 1 4 4 O 1.21251 * 122.89675 * 0.02562 * 3 2 1 5 5 C 1.51119 * 114.19891 * 180.26160 * 3 2 1 6 6 S 1.82384 * 103.49549 * 359.74706 * 5 3 2 7 7 C 1.36750 * 119.81756 * 179.77547 * 2 1 3 8 8 C 1.36439 * 126.26282 * 0.02987 * 7 2 1 9 9 C 1.40396 * 120.00612 * 8.30515 * 8 7 2 10 10 O 1.21910 * 119.99617 * 54.57570 * 9 8 7 11 11 N 1.34774 * 120.00333 * 234.57946 * 9 8 7 12 12 C 1.46493 * 119.99944 * 354.18180 * 11 9 8 13 13 C 1.50697 * 109.47469 * 259.96618 * 12 11 9 14 14 H 1.08005 * 120.00038 * 235.39211 * 13 12 11 15 15 C 1.37871 * 120.00148 * 55.39487 * 13 12 11 16 16 N 1.31510 * 120.00106 * 5.31227 * 15 13 12 17 17 Si 1.86807 * 120.00081 * 185.31977 * 15 13 12 18 18 H 1.48502 * 109.47347 * 59.99667 * 17 15 13 19 19 H 1.48504 * 109.47084 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46993 * 299.99394 * 17 15 13 21 21 C 1.46502 * 119.99869 * 174.18955 * 11 9 8 22 22 C 1.50696 * 109.47056 * 269.99226 * 21 11 9 23 23 C 1.38228 * 119.61505 * 94.73050 * 22 21 11 24 24 C 1.38631 * 119.16005 * 179.75565 * 23 22 21 25 25 C 1.38671 * 118.42234 * 0.51054 * 24 23 22 26 26 C 1.38188 * 119.15990 * 359.72864 * 25 24 23 27 27 N 1.31853 * 119.62046 * 275.00608 * 22 21 11 28 28 H 1.09002 * 109.47004 * 212.23576 * 1 2 3 29 29 H 1.08999 * 109.46736 * 332.23047 * 1 2 3 30 30 H 1.08996 * 109.46994 * 92.22832 * 1 2 3 31 31 H 1.09003 * 110.61189 * 241.25181 * 5 3 2 32 32 H 1.09000 * 110.61944 * 118.25702 * 5 3 2 33 33 H 1.08007 * 120.00168 * 188.30187 * 8 7 2 34 34 H 1.09000 * 109.46874 * 139.96185 * 12 11 9 35 35 H 1.09002 * 109.47163 * 19.96612 * 12 11 9 36 36 H 0.97003 * 120.00485 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.47318 * 29.99794 * 21 11 9 38 38 H 1.09006 * 109.46877 * 149.99460 * 21 11 9 39 39 H 1.08000 * 120.42015 * 359.97438 * 23 22 21 40 40 H 1.08001 * 120.78563 * 180.21597 * 24 23 22 41 41 H 1.07991 * 120.42056 * 179.71170 * 25 24 23 42 42 H 1.08002 * 119.61569 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1225 1.1471 0.0000 4 8 1.5666 2.2247 0.0005 5 6 3.6264 0.9992 -0.0063 6 16 3.8764 -0.8074 -0.0036 7 6 2.1450 -1.1865 0.0046 8 6 1.5918 -2.4337 0.0090 9 6 0.2075 -2.5883 -0.1667 10 8 -0.3414 -2.1019 -1.1405 11 7 -0.5145 -3.2744 0.7412 12 6 0.1601 -3.9664 1.8421 13 6 0.2766 -5.4333 1.5173 14 1 -0.1172 -6.1707 2.2012 15 6 0.8859 -5.8340 0.3473 16 7 1.4576 -4.9444 -0.4345 17 14 0.8992 -7.6407 -0.1276 18 1 -0.4973 -8.1266 -0.2656 19 1 1.6109 -7.8075 -1.4203 20 1 1.5942 -8.4241 0.9252 21 6 -1.9741 -3.3284 0.6269 22 6 -2.5804 -2.1774 1.3876 23 6 -2.8938 -1.0077 0.7211 24 6 -3.4559 0.0433 1.4292 25 6 -3.6728 -0.1183 2.7892 26 6 -3.3292 -1.3152 3.3883 27 7 -2.8007 -2.2958 2.6822 28 1 -0.3633 -0.8693 0.5482 29 1 -0.3633 0.9093 0.4788 30 1 -0.3633 -0.0400 -1.0269 31 1 4.0598 1.4480 0.8875 32 1 4.0521 1.4443 -0.9056 33 1 2.2189 -3.3021 0.1475 34 1 -0.4177 -3.8417 2.7579 35 1 1.1557 -3.5447 1.9805 36 1 1.8860 -5.2263 -1.2580 37 1 -2.2592 -3.2605 -0.4230 38 1 -2.3364 -4.2691 1.0417 39 1 -2.7064 -0.9150 -0.3384 40 1 -3.7142 0.9678 0.9341 41 1 -4.1045 0.6812 3.3729 42 1 -3.4946 -1.4489 4.4472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874358325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:52 Heat of formation + Delta-G solvation = 15.960138 kcal Electronic energy + Delta-G solvation = -29471.906681 eV Core-core repulsion = 25544.838667 eV Total energy + Delta-G solvation = -3927.068015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.33988 -41.27355 -40.38125 -37.82668 -36.63136 -34.63681 -33.34291 -33.00014 -32.31474 -31.77396 -29.44317 -28.41499 -27.22738 -24.91459 -24.58150 -24.28159 -22.95638 -21.58942 -19.80416 -19.32877 -18.64441 -17.92399 -17.62457 -17.58191 -17.44555 -17.10881 -16.63491 -16.55634 -16.36245 -15.96451 -15.52408 -15.15389 -14.93681 -14.59912 -14.33953 -14.29379 -14.16371 -13.94805 -13.87409 -13.65537 -13.33919 -12.94362 -12.81496 -12.72343 -12.55540 -12.46956 -12.33561 -12.16088 -11.78256 -11.66395 -11.34584 -10.80069 -10.70217 -10.56001 -10.35418 -9.93013 -9.88098 -9.16709 -8.46940 -8.09621 -6.35420 0.08040 0.13900 0.24593 0.39938 0.70217 1.39569 1.44108 1.48071 1.53705 1.68824 2.25165 2.41484 2.56209 2.91157 3.02267 3.26279 3.43744 3.86195 4.00794 4.02140 4.04416 4.15421 4.19765 4.27540 4.32250 4.35719 4.45160 4.66841 4.68674 4.81244 4.86255 4.88709 4.91164 5.20815 5.26222 5.26937 5.30398 5.42880 5.71899 5.82833 5.96504 5.96788 6.14630 6.44701 6.71161 6.93370 7.13809 7.37980 7.62987 8.81222 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007636 B = 0.006413 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3665.960908 B = 4365.195519 C = 7325.165017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.543 5.543 3 C 0.512 3.488 4 O -0.535 6.535 5 C -0.126 4.126 6 S -0.069 6.069 7 C 0.083 3.917 8 C -0.164 4.164 9 C 0.596 3.404 10 O -0.613 6.613 11 N -0.574 5.574 12 C 0.237 3.763 13 C -0.546 4.546 14 H 0.060 0.940 15 C 0.040 3.960 16 N -0.890 5.890 17 Si 0.952 3.048 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.269 1.269 21 C 0.169 3.831 22 C 0.102 3.898 23 C -0.165 4.165 24 C -0.080 4.080 25 C -0.166 4.166 26 C 0.084 3.916 27 N -0.498 5.498 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.194 0.806 34 H 0.038 0.962 35 H 0.032 0.968 36 H 0.267 0.733 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.159 0.841 41 H 0.170 0.830 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 11.168 4.295 12.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.265 5.265 3 C 0.300 3.700 4 O -0.413 6.413 5 C -0.276 4.276 6 S 0.169 5.831 7 C -0.125 4.125 8 C -0.199 4.199 9 C 0.389 3.611 10 O -0.501 6.501 11 N -0.303 5.303 12 C 0.117 3.883 13 C -0.584 4.584 14 H 0.078 0.922 15 C -0.161 4.161 16 N -0.528 5.528 17 Si 0.779 3.221 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.194 1.194 21 C 0.045 3.955 22 C -0.036 4.036 23 C -0.186 4.186 24 C -0.106 4.106 25 C -0.185 4.185 26 C -0.073 4.073 27 N -0.208 5.208 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.189 0.811 32 H 0.187 0.813 33 H 0.210 0.790 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.145 0.855 40 H 0.177 0.823 41 H 0.187 0.813 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.378 10.600 4.099 11.371 hybrid contribution -1.442 -0.090 -0.992 1.753 sum -1.821 10.510 3.107 11.110 Atomic orbital electron populations 1.22498 0.77361 1.02854 1.03453 1.44723 1.09509 1.05360 1.66871 1.20320 0.90765 0.82980 0.75895 1.90741 1.73044 1.26825 1.50710 1.24479 0.93692 0.96509 1.12934 1.86532 0.99168 1.03696 1.93725 1.22284 0.95210 0.87612 1.07416 1.22467 0.97651 0.94998 1.04788 1.16176 0.87031 0.75843 0.82016 1.90724 1.73794 1.53679 1.31863 1.48360 1.04655 1.48771 1.28559 1.19211 0.92535 0.91311 0.85203 1.21741 1.37532 0.93016 1.06148 0.92213 1.25584 0.93459 1.00974 0.96112 1.69654 1.35808 1.34036 1.13329 0.85704 0.77895 0.81083 0.77431 1.20648 1.21298 1.19393 1.19916 0.81500 0.95568 0.98553 1.21602 0.95762 0.95549 0.90657 1.22101 1.00401 0.94282 1.01780 1.21936 0.94949 0.98812 0.94858 1.22500 1.01004 0.99536 0.95499 1.23317 0.93744 0.89137 1.01118 1.67495 1.12407 1.33509 1.07416 0.90229 0.90825 0.90846 0.81092 0.81266 0.79007 0.94393 0.95016 0.92322 0.90560 0.90223 0.85498 0.82311 0.81283 0.80364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.08 7.61 127.77 0.97 4.05 16 2 N -0.54 -19.62 2.95 -660.56 -1.95 -21.57 16 3 C 0.51 16.14 7.79 88.18 0.69 16.83 16 4 O -0.53 -19.04 16.90 -2.94 -0.05 -19.09 16 5 C -0.13 -2.71 7.36 71.37 0.53 -2.19 16 6 S -0.07 -1.98 23.35 -56.49 -1.32 -3.30 16 7 C 0.08 3.15 7.00 83.51 0.58 3.73 16 8 C -0.16 -7.26 6.86 22.38 0.15 -7.10 16 9 C 0.60 27.52 2.92 84.77 0.25 27.76 16 10 O -0.61 -29.77 13.19 -5.02 -0.07 -29.84 16 11 N -0.57 -25.81 2.09 -842.32 -1.76 -27.58 16 12 C 0.24 11.04 5.61 85.63 0.48 11.52 16 13 C -0.55 -27.10 9.43 25.60 0.24 -26.86 16 14 H 0.06 2.95 7.82 -2.91 -0.02 2.92 16 15 C 0.04 1.98 5.33 84.65 0.45 2.43 16 16 N -0.89 -44.90 7.73 21.44 0.17 -44.74 16 17 Si 0.95 40.62 29.54 68.60 2.03 42.65 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 C 0.17 6.96 5.74 85.63 0.49 7.46 16 22 C 0.10 3.64 5.87 42.55 0.25 3.89 16 23 C -0.17 -5.09 7.75 22.36 0.17 -4.92 16 24 C -0.08 -1.88 10.18 22.47 0.23 -1.65 16 25 C -0.17 -3.45 10.11 22.36 0.23 -3.22 16 26 C 0.08 2.13 11.18 84.67 0.95 3.08 16 27 N -0.50 -16.90 10.27 -183.88 -1.89 -18.79 16 28 H 0.08 3.18 3.22 -2.39 -0.01 3.18 16 29 H 0.07 2.55 7.42 -2.39 -0.02 2.53 16 30 H 0.07 2.94 6.77 -2.39 -0.02 2.92 16 31 H 0.17 2.60 8.14 -2.39 -0.02 2.59 16 32 H 0.17 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.19 9.20 5.18 -2.91 -0.02 9.18 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.03 1.53 6.34 -2.39 -0.02 1.51 16 36 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 37 H 0.08 3.22 7.25 -2.39 -0.02 3.20 16 38 H 0.08 3.37 8.07 -2.38 -0.02 3.35 16 39 H 0.13 4.12 8.02 -2.91 -0.02 4.09 16 40 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.17 2.15 8.06 -2.92 -0.02 2.13 16 42 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -63.15 355.11 2.89 -60.26 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 1.07 Total: 27.18 kcal Atomic # 6 Polarization: 28.15 SS G_CDS: 6.66 Total: 34.81 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -5.43 Total: -112.67 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: -0.12 Total: -48.93 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -1.32 Total: -3.30 kcal Total: -63.15 2.89 -60.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874358325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.222 kcal (2) G-P(sol) polarization free energy of solvation -63.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds