Wall clock time and date at job start Wed Apr 1 2020 04:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40086 * 126.03929 * 2 1 4 4 C 1.30835 * 108.20412 * 180.23307 * 3 2 1 5 5 C 1.39869 * 108.20701 * 359.77993 * 4 3 2 6 6 C 1.34952 * 126.03698 * 179.84537 * 2 1 3 7 7 C 1.50706 * 126.12625 * 0.03797 * 6 2 1 8 8 H 1.09003 * 109.67299 * 188.37397 * 7 6 2 9 9 C 1.53292 * 109.67808 * 308.89148 * 7 6 2 10 10 O 1.42969 * 109.21856 * 172.06266 * 9 7 6 11 11 C 1.42959 * 114.16682 * 297.42105 * 10 9 7 12 12 C 1.53297 * 109.22397 * 62.58173 * 11 10 9 13 13 N 1.47148 * 109.71301 * 67.84026 * 7 6 2 14 14 C 1.34783 * 120.98323 * 9.74095 * 13 7 6 15 15 O 1.21761 * 119.99549 * 5.35919 * 14 13 7 16 16 C 1.46231 * 120.00069 * 185.35084 * 14 13 7 17 17 S 1.75660 * 125.23100 * 311.36055 * 16 14 13 18 18 C 1.75476 * 92.09422 * 179.97438 * 17 16 14 19 19 C 1.32764 * 111.36276 * 359.97438 * 18 17 16 20 20 C 1.39556 * 125.22530 * 131.04845 * 16 14 13 21 21 C 1.40536 * 123.71468 * 0.02562 * 20 16 14 22 22 H 1.08003 * 120.00089 * 21.44293 * 21 20 16 23 23 C 1.40306 * 119.99920 * 201.43467 * 21 20 16 24 24 N 1.30638 * 120.00315 * 11.69719 * 23 21 20 25 25 Si 1.86804 * 119.99871 * 191.69853 * 23 21 20 26 26 H 1.48500 * 109.47167 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47072 * 120.00153 * 25 23 21 28 28 H 1.48510 * 109.46820 * 240.00000 * 25 23 21 29 29 H 1.09003 * 109.46966 * 270.46829 * 1 2 3 30 30 H 1.09000 * 109.47045 * 30.46899 * 1 2 3 31 31 H 1.08997 * 109.47212 * 150.47040 * 1 2 3 32 32 H 1.08004 * 125.89624 * 179.74386 * 4 3 2 33 33 H 1.08001 * 126.04385 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.51488 * 52.14615 * 9 7 6 35 35 H 1.08998 * 109.56028 * 292.01196 * 9 7 6 36 36 H 1.09000 * 109.51264 * 302.65856 * 11 10 9 37 37 H 1.08996 * 109.51230 * 182.50641 * 11 10 9 38 38 H 1.08996 * 109.68411 * 67.41619 * 12 11 10 39 39 H 1.09003 * 109.68267 * 187.97823 * 12 11 10 40 40 H 1.07997 * 124.31878 * 180.02562 * 18 17 16 41 41 H 1.07991 * 122.78655 * 180.02562 * 19 18 17 42 42 H 0.96989 * 120.00515 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5346 0.7320 -0.0051 5 6 3.5437 -0.6666 -0.0033 6 6 2.2589 -1.0913 0.0029 7 6 1.7973 -2.5259 0.0060 8 1 2.6515 -3.1859 0.1575 9 6 0.7759 -2.7371 1.1294 10 8 0.2079 -4.0436 1.0095 11 6 -0.5192 -4.2567 -0.2027 12 6 0.4359 -4.1233 -1.3943 13 7 1.1486 -2.8413 -1.2765 14 6 1.2057 -1.9815 -2.3129 15 8 1.8810 -0.9717 -2.2296 16 6 0.4569 -2.2615 -3.5374 17 16 0.4586 -3.7925 -4.3985 18 6 -0.6424 -3.1803 -5.6200 19 6 -0.9758 -1.9176 -5.3813 20 6 -0.3737 -1.3553 -4.1980 21 6 -0.5961 -0.0386 -3.7600 22 1 0.1150 0.4391 -3.1022 23 6 -1.7417 0.6555 -4.1774 24 7 -2.7097 0.0167 -4.7788 25 14 -1.8831 2.4932 -3.8731 26 1 -0.6618 2.9755 -3.1794 27 1 -2.0275 3.2001 -5.1710 28 1 -3.0726 2.7647 -3.0265 29 1 -0.3633 0.0084 1.0277 30 1 -0.3633 0.8857 -0.5211 31 1 -0.3633 -0.8941 -0.5065 32 1 4.4054 1.3710 -0.0103 33 1 4.4211 -1.2964 -0.0061 34 1 -0.0126 -1.9887 1.0500 35 1 1.2715 -2.6428 2.0956 36 1 -1.3124 -3.5138 -0.2869 37 1 -0.9546 -5.2559 -0.1952 38 1 1.1529 -4.9441 -1.3838 39 1 -0.1323 -4.1433 -2.3243 40 1 -1.0034 -3.7573 -6.4585 41 1 -1.6455 -1.3592 -6.0184 42 1 -3.5018 0.4964 -5.0670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875811225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:48 Heat of formation + Delta-G solvation = 55.154669 kcal Electronic energy + Delta-G solvation = -30113.711642 eV Core-core repulsion = 26188.343230 eV Total energy + Delta-G solvation = -3925.368412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.09011 -39.28670 -37.69732 -36.11734 -34.20079 -33.22113 -32.97256 -31.97494 -29.22711 -28.85412 -27.41293 -26.29657 -26.07230 -23.97551 -22.62067 -21.57929 -20.53744 -20.20738 -19.18139 -18.74729 -17.42674 -16.40460 -16.13596 -15.85172 -15.56422 -15.41613 -15.10427 -14.99492 -14.50510 -14.43822 -13.97802 -13.85853 -13.57006 -13.02562 -12.64199 -12.54821 -12.50702 -12.36372 -12.12691 -11.99586 -11.91420 -11.69423 -11.52549 -11.21780 -11.07866 -11.02306 -10.67158 -10.42114 -10.20071 -10.05107 -9.97696 -9.77301 -9.45044 -9.22422 -8.30513 -8.07532 -7.67924 -7.55420 -7.21085 -7.12862 -4.66668 2.10095 2.41281 2.83701 2.91696 2.95672 3.02411 3.13136 3.28678 3.34689 3.66527 3.72349 3.76733 3.84514 4.19073 4.69712 4.86883 4.99549 5.05981 5.17144 5.22922 5.33368 5.45602 5.49482 5.64935 5.68195 5.70963 5.90201 5.95388 6.00557 6.13436 6.16972 6.22420 6.33744 6.64116 6.71253 6.95348 7.06911 7.08822 7.10456 7.28541 7.34173 7.57970 7.61552 8.06846 8.22225 8.34984 8.44278 8.57326 9.21744 9.76299 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.006435 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.433028 B = 4350.426095 C = 5979.938371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.344 5.344 3 N -0.296 5.296 4 C 0.045 3.955 5 C -0.274 4.274 6 C 0.133 3.867 7 C 0.176 3.824 8 H 0.095 0.905 9 C 0.048 3.952 10 O -0.379 6.379 11 C 0.046 3.954 12 C 0.068 3.932 13 N -0.626 5.626 14 C 0.617 3.383 15 O -0.521 6.521 16 C -0.439 4.439 17 S -0.025 6.025 18 C -0.218 4.218 19 C -0.095 4.095 20 C 0.146 3.854 21 C -0.400 4.400 22 H 0.097 0.903 23 C 0.074 3.926 24 N -0.780 5.780 25 Si 0.910 3.090 26 H -0.252 1.252 27 H -0.267 1.267 28 H -0.269 1.269 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.172 0.828 33 H 0.133 0.867 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.123 0.877 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.901 -5.247 7.109 8.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.127 5.127 3 N -0.118 5.118 4 C -0.140 4.140 5 C -0.304 4.304 6 C 0.005 3.995 7 C 0.071 3.929 8 H 0.112 0.888 9 C -0.030 4.030 10 O -0.297 6.297 11 C -0.031 4.031 12 C -0.056 4.056 13 N -0.364 5.364 14 C 0.411 3.589 15 O -0.397 6.397 16 C -0.558 4.558 17 S 0.232 5.768 18 C -0.351 4.351 19 C -0.127 4.127 20 C 0.135 3.865 21 C -0.432 4.432 22 H 0.115 0.885 23 C -0.148 4.148 24 N -0.404 5.404 25 Si 0.733 3.267 26 H -0.175 1.175 27 H -0.192 1.192 28 H -0.194 1.194 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.189 0.811 33 H 0.151 0.849 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.084 0.916 39 H 0.140 0.860 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.801 -5.154 7.346 9.010 hybrid contribution -0.441 1.375 -0.757 1.630 sum 0.360 -3.779 6.589 7.605 Atomic orbital electron populations 1.21846 0.75425 1.05226 1.01363 1.47960 1.05637 1.02991 1.56130 1.77195 1.01636 1.08113 1.24895 1.23438 0.95014 0.94685 1.00857 1.20774 0.95275 0.94942 1.19370 1.20117 0.91570 0.88412 0.99419 1.20233 0.96231 0.90871 0.85574 0.88767 1.23168 0.95835 0.85736 0.98295 1.87925 1.70688 1.31590 1.39514 1.23061 0.93719 1.02423 0.83942 1.22737 0.96097 0.85357 1.01456 1.48342 1.56239 1.20543 1.11273 1.17098 0.79067 0.81327 0.81372 1.90807 1.40266 1.27709 1.80955 1.22393 1.28648 0.97461 1.07260 1.82901 1.52454 1.17351 1.24132 1.25064 1.05963 1.00149 1.03935 1.21717 0.99347 0.93938 0.97727 1.17796 0.88304 0.91982 0.88441 1.19678 1.04078 0.96164 1.23241 0.88455 1.26209 0.94714 1.01591 0.92246 1.69647 1.05178 1.38565 1.27006 0.86164 0.79995 0.80848 0.79644 1.17471 1.19204 1.19431 0.91897 0.89358 0.89604 0.81132 0.84894 0.92163 0.87811 0.92457 0.87799 0.91643 0.85952 0.84465 0.83695 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 9.23 59.85 0.55 2.36 16 2 N -0.34 -6.64 2.88 -63.88 -0.18 -6.83 16 3 N -0.30 -6.01 12.58 30.62 0.39 -5.63 16 4 C 0.05 0.81 12.02 -17.37 -0.21 0.60 16 5 C -0.27 -4.87 10.21 -40.01 -0.41 -5.28 16 6 C 0.13 2.44 3.24 -82.26 -0.27 2.17 16 7 C 0.18 2.86 3.20 -68.57 -0.22 2.64 16 8 H 0.09 1.42 8.12 -51.93 -0.42 1.00 16 9 C 0.05 0.66 6.14 37.31 0.23 0.89 16 10 O -0.38 -5.31 10.74 -35.23 -0.38 -5.69 16 11 C 0.05 0.62 6.98 37.31 0.26 0.88 16 12 C 0.07 1.07 6.07 -3.53 -0.02 1.04 16 13 N -0.63 -11.46 2.59 -167.74 -0.43 -11.90 16 14 C 0.62 13.86 5.83 -13.05 -0.08 13.79 16 15 O -0.52 -13.07 11.66 5.13 0.06 -13.01 16 16 C -0.44 -10.26 5.45 -35.88 -0.20 -10.46 16 17 S -0.02 -0.49 20.24 -107.50 -2.18 -2.67 16 18 C -0.22 -4.46 11.07 28.86 0.32 -4.14 16 19 C -0.10 -2.20 9.06 -39.12 -0.35 -2.55 16 20 C 0.15 3.62 5.69 -106.20 -0.60 3.02 16 21 C -0.40 -10.09 8.82 -37.94 -0.33 -10.43 16 22 H 0.10 2.65 6.76 -52.48 -0.35 2.29 16 23 C 0.07 1.71 5.38 -17.28 -0.09 1.61 16 24 N -0.78 -17.78 10.79 55.57 0.60 -17.18 16 25 Si 0.91 17.97 29.58 -169.99 -5.03 12.94 16 26 H -0.25 -5.27 7.11 56.52 0.40 -4.87 16 27 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 28 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 29 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 30 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.09 1.59 5.65 -51.93 -0.29 1.30 16 32 H 0.17 2.44 8.06 -52.48 -0.42 2.02 16 33 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 34 H 0.06 0.85 4.82 -51.93 -0.25 0.60 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.12 2.12 4.33 -35.27 -0.15 1.96 16 40 H 0.14 2.39 8.06 -52.49 -0.42 1.97 16 41 H 0.15 3.37 6.34 -52.49 -0.33 3.04 16 42 H 0.29 5.91 8.29 -40.82 -0.34 5.57 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -29.36 347.63 -8.06 -37.42 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.72 Total: 11.16 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.42 Total: -3.86 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.37 Total: -41.53 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.32 Total: -18.70 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -2.18 Total: -2.67 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.36 -8.06 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875811225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.576 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds