Wall clock time and date at job start Wed Apr 1 2020 04:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40086 * 126.03929 * 2 1 4 4 C 1.30835 * 108.20412 * 180.23307 * 3 2 1 5 5 C 1.39869 * 108.20701 * 359.77993 * 4 3 2 6 6 C 1.34952 * 126.03698 * 179.84537 * 2 1 3 7 7 C 1.50706 * 126.12625 * 0.03797 * 6 2 1 8 8 H 1.09003 * 109.67299 * 188.37397 * 7 6 2 9 9 C 1.53292 * 109.67808 * 308.89148 * 7 6 2 10 10 O 1.42969 * 109.21856 * 172.06266 * 9 7 6 11 11 C 1.42959 * 114.16682 * 297.42105 * 10 9 7 12 12 C 1.53297 * 109.22397 * 62.58173 * 11 10 9 13 13 N 1.47148 * 109.71301 * 67.84026 * 7 6 2 14 14 C 1.34783 * 120.98323 * 9.74095 * 13 7 6 15 15 O 1.21761 * 119.99549 * 5.35919 * 14 13 7 16 16 C 1.46231 * 120.00069 * 185.35084 * 14 13 7 17 17 S 1.75660 * 125.23100 * 311.36055 * 16 14 13 18 18 C 1.75476 * 92.09422 * 179.97438 * 17 16 14 19 19 C 1.32764 * 111.36276 * 359.97438 * 18 17 16 20 20 C 1.39556 * 125.22530 * 131.04845 * 16 14 13 21 21 C 1.40536 * 123.71468 * 0.02562 * 20 16 14 22 22 H 1.08003 * 120.00089 * 21.44293 * 21 20 16 23 23 C 1.40306 * 119.99920 * 201.43467 * 21 20 16 24 24 N 1.30638 * 120.00315 * 11.69719 * 23 21 20 25 25 Si 1.86804 * 119.99871 * 191.69853 * 23 21 20 26 26 H 1.48500 * 109.47167 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47072 * 120.00153 * 25 23 21 28 28 H 1.48510 * 109.46820 * 240.00000 * 25 23 21 29 29 H 1.09003 * 109.46966 * 270.46829 * 1 2 3 30 30 H 1.09000 * 109.47045 * 30.46899 * 1 2 3 31 31 H 1.08997 * 109.47212 * 150.47040 * 1 2 3 32 32 H 1.08004 * 125.89624 * 179.74386 * 4 3 2 33 33 H 1.08001 * 126.04385 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.51488 * 52.14615 * 9 7 6 35 35 H 1.08998 * 109.56028 * 292.01196 * 9 7 6 36 36 H 1.09000 * 109.51264 * 302.65856 * 11 10 9 37 37 H 1.08996 * 109.51230 * 182.50641 * 11 10 9 38 38 H 1.08996 * 109.68411 * 67.41619 * 12 11 10 39 39 H 1.09003 * 109.68267 * 187.97823 * 12 11 10 40 40 H 1.07997 * 124.31878 * 180.02562 * 18 17 16 41 41 H 1.07991 * 122.78655 * 180.02562 * 19 18 17 42 42 H 0.96989 * 120.00515 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5346 0.7320 -0.0051 5 6 3.5437 -0.6666 -0.0033 6 6 2.2589 -1.0913 0.0029 7 6 1.7973 -2.5259 0.0060 8 1 2.6515 -3.1859 0.1575 9 6 0.7759 -2.7371 1.1294 10 8 0.2079 -4.0436 1.0095 11 6 -0.5192 -4.2567 -0.2027 12 6 0.4359 -4.1233 -1.3943 13 7 1.1486 -2.8413 -1.2765 14 6 1.2057 -1.9815 -2.3129 15 8 1.8810 -0.9717 -2.2296 16 6 0.4569 -2.2615 -3.5374 17 16 0.4586 -3.7925 -4.3985 18 6 -0.6424 -3.1803 -5.6200 19 6 -0.9758 -1.9176 -5.3813 20 6 -0.3737 -1.3553 -4.1980 21 6 -0.5961 -0.0386 -3.7600 22 1 0.1150 0.4391 -3.1022 23 6 -1.7417 0.6555 -4.1774 24 7 -2.7097 0.0167 -4.7788 25 14 -1.8831 2.4932 -3.8731 26 1 -0.6618 2.9755 -3.1794 27 1 -2.0275 3.2001 -5.1710 28 1 -3.0726 2.7647 -3.0265 29 1 -0.3633 0.0084 1.0277 30 1 -0.3633 0.8857 -0.5211 31 1 -0.3633 -0.8941 -0.5065 32 1 4.4054 1.3710 -0.0103 33 1 4.4211 -1.2964 -0.0061 34 1 -0.0126 -1.9887 1.0500 35 1 1.2715 -2.6428 2.0956 36 1 -1.3124 -3.5138 -0.2869 37 1 -0.9546 -5.2559 -0.1952 38 1 1.1529 -4.9441 -1.3838 39 1 -0.1323 -4.1433 -2.3243 40 1 -1.0034 -3.7573 -6.4585 41 1 -1.6455 -1.3592 -6.0184 42 1 -3.5018 0.4964 -5.0670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875811225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:47 Heat of formation + Delta-G solvation = 37.181852 kcal Electronic energy + Delta-G solvation = -30114.491002 eV Core-core repulsion = 26188.343230 eV Total energy + Delta-G solvation = -3926.147772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.48562 -40.66132 -39.17932 -37.82074 -35.65091 -34.92727 -34.37944 -33.31478 -30.86614 -30.25412 -28.87336 -27.76541 -27.58937 -25.26089 -24.20419 -23.00854 -21.99198 -21.63654 -20.75930 -20.38059 -18.91551 -17.92028 -17.58420 -17.27235 -17.13804 -16.77890 -16.56897 -16.33892 -15.82646 -15.80304 -15.46414 -15.42161 -14.94146 -14.41686 -14.26332 -14.11000 -14.09145 -13.76781 -13.69377 -13.49626 -13.31531 -13.14191 -13.02182 -12.76074 -12.71316 -12.32756 -12.14360 -12.06504 -11.76897 -11.51317 -11.42556 -11.22212 -11.05650 -10.89427 -9.77930 -9.53019 -9.36132 -9.08134 -8.89652 -8.81364 -6.46511 0.38227 1.00082 1.23160 1.27155 1.30532 1.40314 1.58890 1.75849 1.92914 2.01669 2.09102 2.29007 2.49047 2.73166 3.23935 3.42491 3.62621 3.69098 3.91688 4.04487 4.18031 4.18768 4.29525 4.34185 4.36004 4.46567 4.57870 4.61120 4.62807 4.83282 4.86896 4.92251 4.93311 4.97420 5.27314 5.28720 5.36852 5.53771 5.62798 5.82989 5.93220 5.98399 6.23634 6.30772 6.51151 6.64353 6.79862 6.94064 7.55165 8.06642 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.006435 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.433028 B = 4350.426095 C = 5979.938371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.353 5.353 3 N -0.337 5.337 4 C 0.042 3.958 5 C -0.285 4.285 6 C 0.126 3.874 7 C 0.173 3.827 8 H 0.112 0.888 9 C 0.054 3.946 10 O -0.376 6.376 11 C 0.051 3.949 12 C 0.064 3.936 13 N -0.622 5.622 14 C 0.613 3.387 15 O -0.557 6.557 16 C -0.462 4.462 17 S 0.032 5.968 18 C -0.206 4.206 19 C -0.126 4.126 20 C 0.119 3.881 21 C -0.431 4.431 22 H 0.064 0.936 23 C 0.050 3.950 24 N -0.793 5.793 25 Si 0.966 3.034 26 H -0.280 1.280 27 H -0.254 1.254 28 H -0.252 1.252 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.201 0.799 33 H 0.154 0.846 34 H 0.054 0.946 35 H 0.130 0.870 36 H 0.047 0.953 37 H 0.138 0.862 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.172 0.828 41 H 0.137 0.863 42 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 -7.230 7.878 10.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.136 5.136 3 N -0.160 5.160 4 C -0.143 4.143 5 C -0.315 4.315 6 C -0.002 4.002 7 C 0.069 3.931 8 H 0.129 0.871 9 C -0.024 4.024 10 O -0.294 6.294 11 C -0.026 4.026 12 C -0.060 4.060 13 N -0.358 5.358 14 C 0.406 3.594 15 O -0.437 6.437 16 C -0.580 4.580 17 S 0.289 5.711 18 C -0.340 4.340 19 C -0.158 4.158 20 C 0.108 3.892 21 C -0.462 4.462 22 H 0.083 0.917 23 C -0.170 4.170 24 N -0.418 5.418 25 Si 0.787 3.213 26 H -0.205 1.205 27 H -0.178 1.178 28 H -0.176 1.176 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.218 0.782 33 H 0.171 0.829 34 H 0.073 0.927 35 H 0.148 0.852 36 H 0.065 0.935 37 H 0.156 0.844 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.190 0.810 41 H 0.155 0.845 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.640 -7.194 8.134 10.878 hybrid contribution -0.299 1.840 -0.995 2.113 sum 0.341 -5.355 7.139 8.931 Atomic orbital electron populations 1.21828 0.75191 1.03469 1.02929 1.48067 1.05993 1.03194 1.56380 1.77131 1.02800 1.09354 1.26686 1.24013 0.95227 0.95518 0.99523 1.21151 0.95963 0.95216 1.19127 1.20512 0.91789 0.89090 0.98854 1.20533 0.97478 0.89987 0.85126 0.87052 1.23184 0.95169 0.85648 0.98392 1.87944 1.70545 1.31424 1.39448 1.23118 0.92679 1.04071 0.82736 1.22895 0.96698 0.84454 1.01928 1.48258 1.55819 1.20649 1.11082 1.17117 0.78741 0.81431 0.82068 1.90782 1.41931 1.29187 1.81783 1.22891 1.27796 0.99254 1.08093 1.82558 1.51444 1.14536 1.22520 1.25511 1.04539 0.99443 1.04463 1.21595 1.01182 0.95187 0.97860 1.18145 0.89282 0.92376 0.89364 1.19475 1.04907 0.97203 1.24650 0.91740 1.26642 0.93968 1.04372 0.92023 1.69627 1.05448 1.39699 1.27001 0.85382 0.79100 0.76952 0.79878 1.20451 1.17808 1.17597 0.88444 0.91486 0.91003 0.78236 0.82855 0.92740 0.85206 0.93472 0.84404 0.89735 0.87538 0.81027 0.84509 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.90 9.23 127.77 1.18 5.07 16 2 N -0.35 -13.90 2.88 -356.02 -1.02 -14.93 16 3 N -0.34 -14.02 12.58 -57.02 -0.72 -14.73 16 4 C 0.04 1.49 12.02 85.24 1.02 2.52 16 5 C -0.28 -9.95 10.21 21.99 0.22 -9.73 16 6 C 0.13 4.56 3.24 41.41 0.13 4.70 16 7 C 0.17 5.36 3.20 44.22 0.14 5.50 16 8 H 0.11 3.07 8.12 -2.39 -0.02 3.05 16 9 C 0.05 1.36 6.14 72.08 0.44 1.81 16 10 O -0.38 -9.36 10.74 -148.98 -1.60 -10.96 16 11 C 0.05 1.24 6.98 72.08 0.50 1.74 16 12 C 0.06 1.87 6.07 86.35 0.52 2.39 16 13 N -0.62 -22.23 2.59 -802.81 -2.08 -24.31 16 14 C 0.61 27.92 5.83 86.32 0.50 28.42 16 15 O -0.56 -28.87 11.66 -4.54 -0.05 -28.92 16 16 C -0.46 -21.85 5.45 24.67 0.13 -21.71 16 17 S 0.03 1.24 20.24 -56.49 -1.14 0.10 16 18 C -0.21 -8.14 11.07 66.64 0.74 -7.40 16 19 C -0.13 -5.86 9.06 22.61 0.20 -5.66 16 20 C 0.12 6.12 5.69 -20.89 -0.12 6.00 16 21 C -0.43 -22.89 8.82 23.33 0.21 -22.68 16 22 H 0.06 3.78 6.76 -2.91 -0.02 3.76 16 23 C 0.05 2.39 5.38 85.37 0.46 2.85 16 24 N -0.79 -36.76 10.79 21.89 0.24 -36.52 16 25 Si 0.97 38.15 29.58 68.60 2.03 40.18 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 28 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 29 H 0.10 2.73 7.68 -2.39 -0.02 2.71 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.07 2.77 5.65 -2.39 -0.01 2.76 16 32 H 0.20 5.57 8.06 -2.91 -0.02 5.55 16 33 H 0.15 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.05 1.46 4.82 -2.39 -0.01 1.45 16 35 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.11 3.51 4.33 -12.98 -0.06 3.45 16 40 H 0.17 5.47 8.06 -2.91 -0.02 5.45 16 41 H 0.14 6.49 6.34 -2.92 -0.02 6.48 16 42 H 0.30 12.27 8.29 -92.72 -0.77 11.50 16 Total: -1.00 -66.21 347.63 2.97 -63.24 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 1.03 Total: 33.05 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 6.30 Total: -6.19 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -3.59 Total: -90.49 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.65 Total: -39.88 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -1.14 Total: 0.10 kcal Total: -66.21 2.97 -63.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875811225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.420 kcal (2) G-P(sol) polarization free energy of solvation -66.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds