Wall clock time and date at job start Wed Apr 1 2020 04:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34233 * 117.00068 * 2 1 4 4 O 1.20825 * 119.99735 * 0.02562 * 3 2 1 5 5 C 1.50687 * 120.00101 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47441 * 180.02562 * 5 3 2 7 7 N 1.46492 * 109.47338 * 180.02562 * 6 5 3 8 8 C 1.36949 * 119.99689 * 269.65162 * 7 6 5 9 9 H 1.07994 * 119.99806 * 322.04884 * 8 7 6 10 10 C 1.38809 * 119.99598 * 142.05451 * 8 7 6 11 11 N 1.31620 * 119.99600 * 157.05958 * 10 8 7 12 12 Si 1.86797 * 120.00382 * 337.05026 * 10 8 7 13 13 H 1.48501 * 109.46991 * 95.70117 * 12 10 8 14 14 H 1.48492 * 109.47539 * 215.70272 * 12 10 8 15 15 H 1.48503 * 109.47319 * 335.70430 * 12 10 8 16 16 C 1.46499 * 120.00519 * 89.65385 * 7 6 5 17 17 C 1.50703 * 109.46933 * 89.99858 * 16 7 6 18 18 C 1.33853 * 122.08250 * 95.00267 * 17 16 7 19 19 S 1.76256 * 108.19507 * 179.97438 * 18 17 16 20 20 C 1.76182 * 89.82734 * 0.02562 * 19 18 17 21 21 C 1.47834 * 125.46821 * 179.97438 * 20 19 18 22 22 C 1.39534 * 119.74558 * 0.02870 * 21 20 19 23 23 C 1.38366 * 119.05100 * 179.97438 * 22 21 20 24 24 C 1.38806 * 118.52617 * 359.97438 * 23 22 21 25 25 C 1.38290 * 119.40232 * 0.27639 * 24 23 22 26 26 N 1.31718 * 120.91264 * 359.42744 * 25 24 23 27 27 N 1.30229 * 109.06191 * 0.22776 * 20 19 18 28 28 H 1.09001 * 109.47113 * 299.99661 * 1 2 3 29 29 H 1.09002 * 109.47834 * 59.99950 * 1 2 3 30 30 H 1.08999 * 109.47330 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47623 * 60.00158 * 5 3 2 32 32 H 1.09002 * 109.47514 * 300.00364 * 5 3 2 33 33 H 1.08996 * 109.46711 * 59.99902 * 6 5 3 34 34 H 1.09004 * 109.46505 * 300.00049 * 6 5 3 35 35 H 0.97007 * 119.99507 * 180.02562 * 11 10 8 36 36 H 1.08996 * 109.47087 * 330.00072 * 16 7 6 37 37 H 1.08995 * 109.47515 * 209.99713 * 16 7 6 38 38 H 1.08001 * 125.90042 * 0.02562 * 18 17 16 39 39 H 1.07996 * 120.47873 * 359.97438 * 22 21 20 40 40 H 1.07999 * 120.73507 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.30063 * 180.02562 * 24 23 22 42 42 H 1.07997 * 119.54244 * 179.69930 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4630 2.8188 -0.0010 8 6 6.1474 2.8609 1.1845 9 1 5.7495 3.4204 2.0181 10 6 7.3525 2.1845 1.3145 11 7 8.2213 2.5579 2.2300 12 14 7.7412 0.7441 0.1904 13 1 8.5548 1.2180 -0.9580 14 1 8.5026 -0.2824 0.9463 15 1 6.4751 0.1518 -0.3111 16 6 6.1939 2.8504 -1.2702 17 6 6.3701 4.2802 -1.7128 18 6 7.4789 4.9780 -1.4381 19 16 7.2967 6.5923 -2.1216 20 6 5.7009 6.1514 -2.7242 21 6 4.7960 7.0387 -3.4853 22 6 5.1915 8.3444 -3.7778 23 6 4.3335 9.1624 -4.4915 24 6 3.1072 8.6491 -4.8907 25 6 2.7768 7.3470 -4.5621 26 7 3.6135 6.5865 -3.8866 27 7 5.4443 4.9200 -2.3868 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.9557 0.7810 -0.8909 32 1 3.9563 0.7806 0.8891 33 1 3.6107 3.2356 0.8906 34 1 3.6099 3.2368 -0.8894 35 1 9.0637 2.0854 2.3205 36 1 5.6322 2.3025 -2.0267 37 1 7.1720 2.3879 -1.1380 38 1 8.3371 4.6143 -0.8926 39 1 6.1535 8.7115 -3.4520 40 1 4.6121 10.1774 -4.7332 41 1 2.4156 9.2623 -5.4494 42 1 1.8212 6.9469 -4.8674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877709068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:07 Heat of formation + Delta-G solvation = 27.788467 kcal Electronic energy + Delta-G solvation = -27305.932139 eV Core-core repulsion = 23379.377039 eV Total energy + Delta-G solvation = -3926.555100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.22994 -40.08163 -39.08552 -36.50329 -35.77515 -32.78286 -32.35513 -32.15879 -30.80644 -29.26573 -27.52855 -26.42815 -25.27834 -24.53262 -23.64213 -22.18935 -21.24013 -19.86919 -19.02532 -18.08326 -17.32868 -16.88649 -16.40230 -16.26735 -16.13672 -16.08280 -15.87548 -15.26390 -14.64178 -14.44166 -14.11953 -13.86182 -13.51260 -13.30312 -13.23731 -13.08422 -12.78367 -12.68894 -12.40645 -12.16280 -12.05937 -12.00708 -11.59958 -11.39993 -10.90827 -10.59993 -10.58350 -10.23641 -10.13779 -10.08368 -10.06851 -9.76843 -9.60324 -9.51802 -9.28736 -8.91754 -8.66527 -8.00782 -7.05513 -6.14658 -3.56191 0.35795 1.13037 1.55956 1.61490 2.07223 2.60100 3.02534 3.18214 3.29946 3.39132 3.40981 3.86731 3.98823 4.37826 4.42742 4.67590 4.89586 4.90720 4.95406 5.12357 5.14245 5.19744 5.25719 5.36969 5.42895 5.54410 5.59217 5.71053 5.77943 5.84622 5.90151 5.93003 5.98401 6.23328 6.32900 6.40026 6.46427 6.58884 6.67266 6.69894 6.93121 7.85650 7.88657 8.10515 8.23997 8.30098 8.81409 9.54065 9.94864 10.99850 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007958 B = 0.004172 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3517.679632 B = 6709.841949 C = 9718.770211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.464 3.536 4 O -0.511 6.511 5 C -0.135 4.135 6 C 0.163 3.837 7 N -0.586 5.586 8 C -0.271 4.271 9 H 0.081 0.919 10 C 0.042 3.958 11 N -0.889 5.889 12 Si 0.865 3.135 13 H -0.283 1.283 14 H -0.297 1.297 15 H -0.262 1.262 16 C 0.202 3.798 17 C 0.055 3.945 18 C -0.198 4.198 19 S 0.059 5.941 20 C 0.081 3.919 21 C 0.211 3.789 22 C -0.157 4.157 23 C -0.071 4.071 24 C -0.175 4.175 25 C 0.106 3.894 26 N -0.447 5.447 27 N -0.407 5.407 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.265 0.735 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.182 0.818 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 7.092 -12.878 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.307 3.693 4 O -0.399 6.399 5 C -0.175 4.175 6 C 0.037 3.963 7 N -0.305 5.305 8 C -0.399 4.399 9 H 0.099 0.901 10 C -0.160 4.160 11 N -0.528 5.528 12 Si 0.694 3.306 13 H -0.210 1.210 14 H -0.225 1.225 15 H -0.186 1.186 16 C 0.073 3.927 17 C -0.080 4.080 18 C -0.338 4.338 19 S 0.311 5.689 20 C -0.195 4.195 21 C 0.071 3.929 22 C -0.179 4.179 23 C -0.097 4.097 24 C -0.195 4.195 25 C -0.053 4.053 26 N -0.157 5.157 27 N -0.121 5.121 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.199 0.801 39 H 0.154 0.846 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.813 7.131 -12.693 16.523 hybrid contribution 0.368 -0.722 -0.280 0.857 sum -7.445 6.410 -12.973 16.273 Atomic orbital electron populations 1.23162 0.77492 1.03029 1.02251 1.86571 1.22684 1.34593 1.84506 1.24376 0.92639 0.80821 0.71452 1.90633 1.67425 1.36296 1.45534 1.22369 0.84975 1.04643 1.05551 1.20791 0.83679 0.90205 1.01631 1.44140 1.00995 1.83746 1.01623 1.18849 1.03751 1.26748 0.90591 0.90105 1.25474 0.96606 0.97501 0.96390 1.69889 1.07548 1.39661 1.35736 0.87111 0.78659 0.84683 0.80154 1.21040 1.22469 1.18632 1.20044 0.97600 0.86837 0.88214 1.21460 0.88132 1.01734 0.96626 1.27075 1.05074 0.94158 1.07504 1.84459 1.16437 1.16461 1.51500 1.25202 0.95514 0.93783 1.05011 1.18618 0.90396 0.89679 0.94189 1.22013 1.01443 0.93873 1.00602 1.21457 0.93310 0.99828 0.95120 1.22255 0.97832 0.97467 1.01995 1.22860 0.98426 0.90548 0.93494 1.67773 1.02017 1.37003 1.08858 1.66340 1.30024 1.05163 1.10551 0.92189 0.92237 0.88676 0.88679 0.87387 0.92023 0.92080 0.92456 0.91992 0.91022 0.80120 0.84561 0.84347 0.84558 0.82300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.73 10.57 -39.27 -0.41 -6.14 16 3 C 0.46 8.26 7.96 36.00 0.29 8.55 16 4 O -0.51 -10.23 15.73 -18.75 -0.29 -10.52 16 5 C -0.14 -2.49 6.13 -27.89 -0.17 -2.66 16 6 C 0.16 3.44 4.96 -4.04 -0.02 3.42 16 7 N -0.59 -13.51 2.05 -174.62 -0.36 -13.87 16 8 C -0.27 -7.12 9.90 -15.05 -0.15 -7.27 16 9 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 10 C 0.04 1.12 5.29 -17.43 -0.09 1.03 16 11 N -0.89 -25.29 13.97 55.49 0.78 -24.51 16 12 Si 0.86 20.25 25.10 -169.99 -4.27 15.98 16 13 H -0.28 -6.39 6.68 56.52 0.38 -6.02 16 14 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 16 C 0.20 4.35 4.92 -5.19 -0.03 4.32 16 17 C 0.06 1.15 6.27 -84.41 -0.53 0.62 16 18 C -0.20 -3.81 11.07 29.19 0.32 -3.48 16 19 S 0.06 0.93 22.37 -107.50 -2.40 -1.47 16 20 C 0.08 1.45 7.42 -14.31 -0.11 1.34 16 21 C 0.21 3.31 6.75 -83.03 -0.56 2.75 16 22 C -0.16 -1.86 9.64 -39.05 -0.38 -2.24 16 23 C -0.07 -0.65 10.16 -39.32 -0.40 -1.05 16 24 C -0.17 -1.56 10.11 -39.35 -0.40 -1.96 16 25 C 0.11 1.23 11.17 -17.58 -0.20 1.03 16 26 N -0.45 -7.17 10.26 -9.85 -0.10 -7.27 16 27 N -0.41 -8.34 10.48 -7.55 -0.08 -8.42 16 28 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 32 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 33 H 0.06 1.37 7.99 -51.93 -0.42 0.95 16 34 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 35 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.07 1.60 3.32 -51.93 -0.17 1.43 16 38 H 0.18 3.48 8.06 -52.49 -0.42 3.06 16 39 H 0.14 1.38 7.29 -52.49 -0.38 1.00 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -32.55 377.73 -7.99 -40.54 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.19 Total: 4.11 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -1.35 Total: 5.88 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.24 Total: -54.06 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.71 Total: -16.67 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.27 Total: 15.98 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.40 Total: -1.47 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.55 -7.99 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.328 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds