Wall clock time and date at job start Wed Apr 1 2020 04:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00403 * 2 1 4 4 O 1.20833 * 119.99575 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00267 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47201 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.47255 * 176.92548 * 6 5 3 8 8 C 1.36939 * 120.00203 * 263.71894 * 7 6 5 9 9 H 1.07998 * 120.00357 * 187.16237 * 8 7 6 10 10 C 1.38821 * 119.99999 * 7.16822 * 8 7 6 11 11 N 1.31620 * 119.99362 * 25.23294 * 10 8 7 12 12 Si 1.86793 * 119.99897 * 205.23542 * 10 8 7 13 13 H 1.48498 * 109.47004 * 90.00248 * 12 10 8 14 14 H 1.48501 * 109.46735 * 209.99564 * 12 10 8 15 15 H 1.48491 * 109.47310 * 329.99499 * 12 10 8 16 16 C 1.46498 * 120.00198 * 83.72187 * 7 6 5 17 17 C 1.50704 * 109.47264 * 84.75710 * 16 7 6 18 18 C 1.38172 * 120.00959 * 260.09140 * 17 16 7 19 19 C 1.38441 * 120.02409 * 180.02562 * 18 17 16 20 20 F 1.35097 * 119.97017 * 179.97438 * 19 18 17 21 21 C 1.38474 * 120.06106 * 359.97438 * 19 18 17 22 22 C 1.38132 * 120.03114 * 359.74611 * 21 19 18 23 23 C 1.38678 * 120.01598 * 80.06665 * 17 16 7 24 24 O 1.35952 * 120.02572 * 359.97438 * 23 17 16 25 25 C 1.42905 * 116.99471 * 179.97438 * 24 23 17 26 26 F 1.39891 * 109.47592 * 300.00543 * 25 24 23 27 27 F 1.39900 * 109.46910 * 60.00532 * 25 24 23 28 28 H 1.08997 * 109.47213 * 59.99425 * 1 2 3 29 29 H 1.09003 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46942 * 299.99714 * 1 2 3 31 31 H 1.08996 * 109.47432 * 60.00510 * 5 3 2 32 32 H 1.09004 * 109.47063 * 299.99956 * 5 3 2 33 33 H 1.09004 * 109.47203 * 56.92275 * 6 5 3 34 34 H 1.08997 * 109.47279 * 296.92999 * 6 5 3 35 35 H 0.97007 * 119.99533 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.46584 * 324.75827 * 16 7 6 37 37 H 1.08996 * 109.47367 * 204.76254 * 16 7 6 38 38 H 1.07995 * 119.99379 * 359.97326 * 18 17 16 39 39 H 1.08000 * 119.98720 * 180.02562 * 21 19 18 40 40 H 1.07997 * 120.02155 * 180.27609 * 22 21 19 41 41 H 1.09006 * 109.47031 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4613 2.8191 0.0737 8 6 6.0774 3.0019 1.2829 9 1 7.1426 3.1745 1.3257 10 6 5.3326 2.9653 2.4539 11 7 4.2009 2.2945 2.4932 12 14 5.9368 3.8679 3.9736 13 1 5.4031 5.2537 3.9710 14 1 5.4661 3.1586 5.1904 15 1 7.4211 3.9090 3.9676 16 6 6.2634 2.7008 -1.1465 17 6 6.3650 4.0484 -1.8136 18 6 5.5505 4.3507 -2.8880 19 6 5.6439 5.5883 -3.5013 20 9 4.8473 5.8826 -4.5521 21 6 6.5530 6.5249 -3.0388 22 6 7.3644 6.2273 -1.9613 23 6 7.2755 4.9856 -1.3490 24 8 8.0767 4.6895 -0.2913 25 6 8.9913 5.7023 0.1331 26 9 9.8582 6.0181 -0.9184 27 9 8.2788 6.8459 0.5096 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9558 0.7809 -0.8908 32 1 3.9564 0.7805 0.8892 33 1 3.5658 3.2489 0.8618 34 1 3.6566 3.2230 -0.9155 35 1 3.6802 2.2692 3.3113 36 1 5.7883 1.9937 -1.8264 37 1 7.2618 2.3452 -0.8919 38 1 4.8413 3.6211 -3.2500 39 1 6.6245 7.4901 -3.5180 40 1 8.0702 6.9594 -1.5979 41 1 9.5681 5.3378 0.9831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877710075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:52 Heat of formation + Delta-G solvation = -218.376820 kcal Electronic energy + Delta-G solvation = -31757.753793 eV Core-core repulsion = 26803.621803 eV Total energy + Delta-G solvation = -4954.131990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.21835 -48.60961 -47.19831 -39.82396 -39.63400 -37.08206 -36.25786 -35.51572 -32.34972 -30.99908 -30.03053 -29.34093 -27.27191 -26.09633 -25.59645 -24.18575 -22.45807 -22.05763 -20.72721 -19.66803 -18.74711 -18.04251 -17.75824 -17.21993 -16.86000 -16.38433 -16.12124 -15.88211 -15.73382 -15.44319 -15.38420 -14.99750 -14.31865 -13.98143 -13.84369 -13.64713 -13.60965 -13.51965 -13.40551 -13.32219 -13.03279 -12.96520 -12.51185 -12.25834 -11.96703 -11.80564 -11.73081 -11.42383 -11.29014 -11.14264 -10.86148 -10.68520 -10.57400 -10.26912 -10.17685 -9.88964 -9.69152 -9.56339 -8.76624 -8.46705 -7.93856 -7.08266 -5.88273 -3.15440 1.39550 1.43500 2.82515 3.07357 3.35446 3.41839 3.45352 3.47660 3.59471 3.77069 4.44958 4.46965 4.51675 4.80094 4.89103 4.93086 5.25873 5.31210 5.39324 5.43969 5.48095 5.49140 5.68083 5.74636 5.93755 5.96876 6.10457 6.22785 6.29375 6.31295 6.44456 6.63825 6.65317 6.69603 6.87242 7.03042 7.31906 7.43846 7.67650 7.83496 8.24961 8.57119 9.12976 9.75108 10.18059 11.18576 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009438 B = 0.004661 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.031627 B = 6005.833741 C = 8287.041197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.371 6.371 3 C 0.472 3.528 4 O -0.520 6.520 5 C -0.113 4.113 6 C 0.180 3.820 7 N -0.582 5.582 8 C -0.244 4.244 9 H 0.085 0.915 10 C 0.000 4.000 11 N -0.900 5.900 12 Si 0.894 3.106 13 H -0.289 1.289 14 H -0.294 1.294 15 H -0.282 1.282 16 C 0.186 3.814 17 C -0.072 4.072 18 C -0.117 4.117 19 C 0.066 3.934 20 F -0.146 7.146 21 C -0.130 4.130 22 C -0.170 4.170 23 C 0.118 3.882 24 O -0.290 6.290 25 C 0.407 3.593 26 F -0.207 7.207 27 F -0.199 7.199 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.015 0.985 35 H 0.254 0.746 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.005 1.352 -7.782 9.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.288 6.288 3 C 0.316 3.684 4 O -0.408 6.408 5 C -0.153 4.153 6 C 0.054 3.946 7 N -0.301 5.301 8 C -0.372 4.372 9 H 0.102 0.898 10 C -0.197 4.197 11 N -0.546 5.546 12 Si 0.724 3.276 13 H -0.216 1.216 14 H -0.221 1.221 15 H -0.207 1.207 16 C 0.058 3.942 17 C -0.076 4.076 18 C -0.136 4.136 19 C 0.047 3.953 20 F -0.125 7.125 21 C -0.150 4.150 22 C -0.189 4.189 23 C 0.074 3.926 24 O -0.207 6.207 25 C 0.316 3.684 26 F -0.189 7.189 27 F -0.181 7.181 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.124 0.876 34 H 0.034 0.966 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.667 1.474 -7.539 8.989 hybrid contribution -0.192 1.060 0.647 1.257 sum 4.474 2.534 -6.892 8.599 Atomic orbital electron populations 1.23070 0.78332 1.02518 1.01925 1.86573 1.22049 1.35328 1.84886 1.24544 0.92910 0.80342 0.70606 1.90574 1.67586 1.36435 1.46216 1.22309 0.84099 1.04375 1.04494 1.20725 0.82497 0.91133 1.00260 1.44137 1.01230 1.82918 1.01775 1.19389 0.93507 1.41651 0.82661 0.89772 1.24683 0.97467 1.00129 0.97441 1.70026 1.16748 1.40593 1.27208 0.86410 0.77970 0.80445 0.82740 1.21649 1.22061 1.20709 1.19711 0.97096 0.88833 0.88543 1.20394 0.92866 1.00112 0.94193 1.20886 1.00429 0.95781 0.96540 1.17612 0.93874 0.95337 0.88473 1.91456 1.72294 1.93805 1.54927 1.20722 0.96758 0.99455 0.98042 1.21302 1.02824 0.96218 0.98511 1.18620 0.92475 0.93690 0.87815 1.86847 1.48084 1.39246 1.46483 1.23414 0.80822 0.76868 0.87310 1.93062 1.70551 1.93301 1.61946 1.93089 1.79832 1.53823 1.91367 0.92689 0.89097 0.92410 0.91679 0.84696 0.87643 0.96648 0.93533 0.93104 0.91142 0.84369 0.84980 0.84674 0.80590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.78 10.56 -39.25 -0.41 -7.19 16 3 C 0.47 9.83 7.96 36.00 0.29 10.12 16 4 O -0.52 -12.03 15.71 -18.76 -0.29 -12.33 16 5 C -0.11 -2.37 5.59 -27.88 -0.16 -2.52 16 6 C 0.18 4.12 4.21 -4.04 -0.02 4.10 16 7 N -0.58 -12.98 2.52 -174.61 -0.44 -13.42 16 8 C -0.24 -5.95 9.24 -15.06 -0.14 -6.08 16 9 H 0.08 2.00 6.76 -52.49 -0.35 1.64 16 10 C 0.00 -0.01 4.92 -17.43 -0.09 -0.10 16 11 N -0.90 -23.75 8.69 55.49 0.48 -23.26 16 12 Si 0.89 20.73 29.62 -169.99 -5.04 15.69 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 C 0.19 3.42 5.48 -5.19 -0.03 3.39 16 17 C -0.07 -1.26 5.47 -104.48 -0.57 -1.83 16 18 C -0.12 -1.90 9.64 -39.53 -0.38 -2.28 16 19 C 0.07 1.05 7.30 -39.42 -0.29 0.76 16 20 F -0.15 -2.29 17.27 2.25 0.04 -2.25 16 21 C -0.13 -1.93 10.02 -39.53 -0.40 -2.33 16 22 C -0.17 -2.65 8.26 -39.44 -0.33 -2.97 16 23 C 0.12 2.04 6.46 -39.24 -0.25 1.78 16 24 O -0.29 -4.83 8.03 -19.59 -0.16 -4.99 16 25 C 0.41 5.28 5.98 101.05 0.60 5.88 16 26 F -0.21 -2.61 15.60 2.25 0.04 -2.58 16 27 F -0.20 -2.96 15.56 2.25 0.04 -2.93 16 28 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 32 H 0.14 3.16 6.57 -51.93 -0.34 2.82 16 33 H 0.11 2.84 5.62 -51.93 -0.29 2.54 16 34 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 35 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.05 0.84 7.93 -51.93 -0.41 0.43 16 37 H 0.07 1.27 7.71 -51.93 -0.40 0.87 16 38 H 0.14 2.05 8.04 -52.49 -0.42 1.63 16 39 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.14 1.94 5.09 -52.49 -0.27 1.67 16 41 H 0.18 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -29.37 358.81 -5.61 -34.98 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.58 Total: 3.37 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -0.68 Total: 9.50 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.04 Total: -36.68 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.87 Total: -24.51 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.11 Total: -7.76 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.04 Total: 15.69 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.37 -5.61 -34.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.398 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds