Wall clock time and date at job start Wed Apr 1 2020 04:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00403 * 2 1 4 4 O 1.20833 * 119.99575 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00267 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47201 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.47255 * 176.92548 * 6 5 3 8 8 C 1.36939 * 120.00203 * 263.71894 * 7 6 5 9 9 H 1.07998 * 120.00357 * 187.16237 * 8 7 6 10 10 C 1.38821 * 119.99999 * 7.16822 * 8 7 6 11 11 N 1.31620 * 119.99362 * 25.23294 * 10 8 7 12 12 Si 1.86793 * 119.99897 * 205.23542 * 10 8 7 13 13 H 1.48498 * 109.47004 * 90.00248 * 12 10 8 14 14 H 1.48501 * 109.46735 * 209.99564 * 12 10 8 15 15 H 1.48491 * 109.47310 * 329.99499 * 12 10 8 16 16 C 1.46498 * 120.00198 * 83.72187 * 7 6 5 17 17 C 1.50704 * 109.47264 * 84.75710 * 16 7 6 18 18 C 1.38172 * 120.00959 * 260.09140 * 17 16 7 19 19 C 1.38441 * 120.02409 * 180.02562 * 18 17 16 20 20 F 1.35097 * 119.97017 * 179.97438 * 19 18 17 21 21 C 1.38474 * 120.06106 * 359.97438 * 19 18 17 22 22 C 1.38132 * 120.03114 * 359.74611 * 21 19 18 23 23 C 1.38678 * 120.01598 * 80.06665 * 17 16 7 24 24 O 1.35952 * 120.02572 * 359.97438 * 23 17 16 25 25 C 1.42905 * 116.99471 * 179.97438 * 24 23 17 26 26 F 1.39891 * 109.47592 * 300.00543 * 25 24 23 27 27 F 1.39900 * 109.46910 * 60.00532 * 25 24 23 28 28 H 1.08997 * 109.47213 * 59.99425 * 1 2 3 29 29 H 1.09003 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46942 * 299.99714 * 1 2 3 31 31 H 1.08996 * 109.47432 * 60.00510 * 5 3 2 32 32 H 1.09004 * 109.47063 * 299.99956 * 5 3 2 33 33 H 1.09004 * 109.47203 * 56.92275 * 6 5 3 34 34 H 1.08997 * 109.47279 * 296.92999 * 6 5 3 35 35 H 0.97007 * 119.99533 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.46584 * 324.75827 * 16 7 6 37 37 H 1.08996 * 109.47367 * 204.76254 * 16 7 6 38 38 H 1.07995 * 119.99379 * 359.97326 * 18 17 16 39 39 H 1.08000 * 119.98720 * 180.02562 * 21 19 18 40 40 H 1.07997 * 120.02155 * 180.27609 * 22 21 19 41 41 H 1.09006 * 109.47031 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4613 2.8191 0.0737 8 6 6.0774 3.0019 1.2829 9 1 7.1426 3.1745 1.3257 10 6 5.3326 2.9653 2.4539 11 7 4.2009 2.2945 2.4932 12 14 5.9368 3.8679 3.9736 13 1 5.4031 5.2537 3.9710 14 1 5.4661 3.1586 5.1904 15 1 7.4211 3.9090 3.9676 16 6 6.2634 2.7008 -1.1465 17 6 6.3650 4.0484 -1.8136 18 6 5.5505 4.3507 -2.8880 19 6 5.6439 5.5883 -3.5013 20 9 4.8473 5.8826 -4.5521 21 6 6.5530 6.5249 -3.0388 22 6 7.3644 6.2273 -1.9613 23 6 7.2755 4.9856 -1.3490 24 8 8.0767 4.6895 -0.2913 25 6 8.9913 5.7023 0.1331 26 9 9.8582 6.0181 -0.9184 27 9 8.2788 6.8459 0.5096 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9558 0.7809 -0.8908 32 1 3.9564 0.7805 0.8892 33 1 3.5658 3.2489 0.8618 34 1 3.6566 3.2230 -0.9155 35 1 3.6802 2.2692 3.3113 36 1 5.7883 1.9937 -1.8264 37 1 7.2618 2.3452 -0.8919 38 1 4.8413 3.6211 -3.2500 39 1 6.6245 7.4901 -3.5180 40 1 8.0702 6.9594 -1.5979 41 1 9.5681 5.3378 0.9831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877710075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:51 Heat of formation + Delta-G solvation = -233.203420 kcal Electronic energy + Delta-G solvation = -31758.396723 eV Core-core repulsion = 26803.621803 eV Total energy + Delta-G solvation = -4954.774920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.26325 -49.84026 -48.24914 -41.27526 -41.01520 -38.38522 -37.80818 -37.12816 -33.90616 -32.71561 -31.48749 -30.68278 -28.56775 -27.50462 -26.82700 -25.85534 -23.75992 -23.46813 -22.20974 -21.29373 -19.91301 -19.15708 -18.89403 -18.82214 -18.27278 -17.89894 -17.45521 -17.33493 -17.23813 -16.83107 -16.59899 -16.53449 -15.63992 -15.41477 -15.16401 -15.12563 -14.87485 -14.71120 -14.60383 -14.53464 -14.48521 -14.31673 -13.98008 -13.50652 -13.42434 -13.26436 -13.14243 -12.90633 -12.84227 -12.55830 -12.52215 -12.29460 -11.98033 -11.88903 -11.72047 -11.69809 -11.43600 -11.28002 -10.33765 -10.03103 -9.21679 -8.87618 -7.78563 -5.04489 0.14871 0.17866 1.43375 1.49649 1.56339 1.60147 1.75167 2.01499 2.46156 2.57979 2.65210 3.26543 3.38360 3.52541 3.69428 3.75783 3.76405 3.81474 4.10722 4.20952 4.26881 4.35792 4.37934 4.49075 4.55021 4.61220 4.70463 4.76630 4.89549 4.93832 5.02513 5.07952 5.17330 5.34318 5.45962 5.63653 5.68757 5.79934 5.94142 6.09312 6.38434 6.97364 7.23783 7.94070 8.34088 9.25922 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009438 B = 0.004661 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.031627 B = 6005.833741 C = 8287.041197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.475 3.525 4 O -0.549 6.549 5 C -0.103 4.103 6 C 0.191 3.809 7 N -0.593 5.593 8 C -0.230 4.230 9 H 0.092 0.908 10 C -0.051 4.051 11 N -0.920 5.920 12 Si 0.937 3.063 13 H -0.306 1.306 14 H -0.306 1.306 15 H -0.259 1.259 16 C 0.188 3.812 17 C -0.091 4.091 18 C -0.117 4.117 19 C 0.056 3.944 20 F -0.146 7.146 21 C -0.122 4.122 22 C -0.174 4.174 23 C 0.107 3.893 24 O -0.310 6.310 25 C 0.402 3.598 26 F -0.204 7.204 27 F -0.212 7.212 28 H 0.062 0.938 29 H 0.133 0.867 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.017 0.983 35 H 0.241 0.759 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.149 0.851 39 H 0.160 0.840 40 H 0.147 0.853 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.931 1.339 -8.933 10.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C 0.321 3.679 4 O -0.440 6.440 5 C -0.143 4.143 6 C 0.064 3.936 7 N -0.313 5.313 8 C -0.359 4.359 9 H 0.109 0.891 10 C -0.245 4.245 11 N -0.568 5.568 12 Si 0.768 3.232 13 H -0.235 1.235 14 H -0.234 1.234 15 H -0.184 1.184 16 C 0.062 3.938 17 C -0.095 4.095 18 C -0.137 4.137 19 C 0.037 3.963 20 F -0.124 7.124 21 C -0.141 4.141 22 C -0.193 4.193 23 C 0.063 3.937 24 O -0.227 6.227 25 C 0.313 3.687 26 F -0.186 7.186 27 F -0.193 7.193 28 H 0.080 0.920 29 H 0.151 0.849 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.166 0.834 39 H 0.177 0.823 40 H 0.165 0.835 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.632 1.451 -8.723 10.484 hybrid contribution -0.474 1.082 0.890 1.480 sum 5.158 2.533 -7.832 9.715 Atomic orbital electron populations 1.23455 0.75735 1.05341 1.01973 1.86532 1.24538 1.33644 1.84207 1.24427 0.92912 0.80638 0.69947 1.90558 1.68181 1.37529 1.47701 1.22044 0.84608 1.03033 1.04594 1.20393 0.82966 0.91946 0.98268 1.44241 1.01186 1.83277 1.02549 1.19643 0.93763 1.39242 0.83296 0.89057 1.25206 0.98221 1.01600 0.99476 1.70177 1.17730 1.42194 1.26684 0.85679 0.78739 0.78368 0.80376 1.23474 1.23369 1.18365 1.19796 0.96715 0.89918 0.87384 1.20273 0.94212 0.99694 0.95285 1.21026 1.00128 0.96360 0.96184 1.17702 0.94343 0.95522 0.88714 1.91458 1.72332 1.93776 1.54865 1.21046 0.95436 1.00263 0.97308 1.21471 1.03223 0.95958 0.98626 1.18847 0.92623 0.94170 0.88076 1.86805 1.48611 1.40920 1.46345 1.24101 0.80330 0.76042 0.88256 1.93061 1.70193 1.93229 1.62148 1.93063 1.80288 1.54554 1.91441 0.91972 0.84908 0.93118 0.88908 0.86990 0.91798 0.96471 0.94917 0.91233 0.90930 0.83351 0.82253 0.83550 0.76396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.94 16 2 O -0.37 -13.21 10.56 -51.41 -0.54 -13.75 16 3 C 0.48 19.79 7.96 71.23 0.57 20.35 16 4 O -0.55 -25.69 15.71 21.94 0.34 -25.35 16 5 C -0.10 -4.31 5.59 29.85 0.17 -4.14 16 6 C 0.19 8.82 4.21 86.38 0.36 9.18 16 7 N -0.59 -26.25 2.52 -706.34 -1.78 -28.02 16 8 C -0.23 -11.16 9.24 84.04 0.78 -10.38 16 9 H 0.09 4.23 6.76 -2.91 -0.02 4.21 16 10 C -0.05 -2.64 4.92 84.86 0.42 -2.22 16 11 N -0.92 -49.93 8.69 21.65 0.19 -49.74 16 12 Si 0.94 42.93 29.62 68.60 2.03 44.96 16 13 H -0.31 -14.72 7.11 99.48 0.71 -14.01 16 14 H -0.31 -14.49 7.11 99.48 0.71 -13.79 16 15 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 16 C 0.19 6.70 5.48 85.63 0.47 7.17 16 17 C -0.09 -3.09 5.47 -19.77 -0.11 -3.19 16 18 C -0.12 -3.67 9.64 22.30 0.22 -3.45 16 19 C 0.06 1.69 7.30 22.37 0.16 1.85 16 20 F -0.15 -4.30 17.27 44.97 0.78 -3.53 16 21 C -0.12 -3.33 10.02 22.30 0.22 -3.11 16 22 C -0.17 -5.11 8.26 22.36 0.18 -4.92 16 23 C 0.11 3.54 6.46 22.49 0.15 3.69 16 24 O -0.31 -9.84 8.03 -93.01 -0.75 -10.58 16 25 C 0.40 9.57 5.98 113.37 0.68 10.25 16 26 F -0.20 -4.73 15.60 44.97 0.70 -4.02 16 27 F -0.21 -5.93 15.56 44.97 0.70 -5.23 16 28 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 29 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 31 H 0.09 3.30 8.10 -2.39 -0.02 3.28 16 32 H 0.11 5.32 6.57 -2.39 -0.02 5.31 16 33 H 0.06 3.54 5.62 -2.38 -0.01 3.53 16 34 H 0.02 0.77 8.12 -2.39 -0.02 0.75 16 35 H 0.24 13.32 8.31 -92.70 -0.77 12.54 16 36 H 0.07 2.18 7.93 -2.39 -0.02 2.16 16 37 H 0.07 2.53 7.71 -2.39 -0.02 2.51 16 38 H 0.15 4.20 8.04 -2.91 -0.02 4.17 16 39 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.15 3.90 5.09 -2.91 -0.01 3.89 16 41 H 0.22 3.22 8.14 -2.38 -0.02 3.20 16 Total: -1.00 -64.09 358.81 8.22 -55.87 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.09 Total: 16.38 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: 5.46 Total: 23.02 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -1.59 Total: -77.76 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -0.95 Total: -49.68 kcal Atomic # 9 Polarization: -14.96 SS G_CDS: 2.18 Total: -12.78 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -64.09 8.22 -55.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.331 kcal (2) G-P(sol) polarization free energy of solvation -64.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds