Wall clock time and date at job start Wed Apr 1 2020 04:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 117.00075 * 2 1 4 4 O 1.20824 * 120.00054 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99840 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47032 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47202 * 179.97438 * 6 5 3 8 8 C 1.36934 * 120.00418 * 270.00121 * 7 6 5 9 9 H 1.07997 * 119.99789 * 325.86005 * 8 7 6 10 10 C 1.38810 * 119.99832 * 145.85744 * 8 7 6 11 11 N 1.31616 * 120.00317 * 337.86774 * 10 8 7 12 12 Si 1.86800 * 119.99588 * 157.86244 * 10 8 7 13 13 H 1.48502 * 109.47428 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47267 * 120.00393 * 12 10 8 15 15 H 1.48498 * 109.47254 * 240.00288 * 12 10 8 16 16 C 1.46505 * 119.99600 * 90.00179 * 7 6 5 17 17 C 1.50698 * 109.47138 * 86.20645 * 16 7 6 18 18 C 1.38173 * 119.97505 * 267.84422 * 17 16 7 19 19 C 1.38706 * 119.93953 * 179.74587 * 18 17 16 20 20 O 1.35912 * 120.05144 * 180.25477 * 19 18 17 21 21 C 1.38756 * 119.89381 * 0.50823 * 19 18 17 22 22 C 1.38119 * 119.94297 * 359.76383 * 21 19 18 23 23 C 1.50699 * 119.97198 * 180.02562 * 22 21 19 24 24 F 1.39905 * 109.46830 * 269.98060 * 23 22 21 25 25 F 1.39893 * 109.47289 * 29.98216 * 23 22 21 26 26 F 1.39901 * 109.46896 * 149.98112 * 23 22 21 27 27 C 1.38248 * 119.97147 * 88.11815 * 17 16 7 28 28 H 1.09005 * 109.46724 * 59.99877 * 1 2 3 29 29 H 1.08996 * 109.47297 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47002 * 300.00453 * 1 2 3 31 31 H 1.09004 * 109.47303 * 59.99735 * 5 3 2 32 32 H 1.09005 * 109.46977 * 299.99809 * 5 3 2 33 33 H 1.09004 * 109.47092 * 59.99852 * 6 5 3 34 34 H 1.08999 * 109.47268 * 300.00291 * 6 5 3 35 35 H 0.97001 * 120.00056 * 179.97438 * 11 10 8 36 36 H 1.08994 * 109.47269 * 206.20610 * 16 7 6 37 37 H 1.08998 * 109.46826 * 326.21279 * 16 7 6 38 38 H 1.07994 * 120.02497 * 0.02562 * 18 17 16 39 39 H 0.96697 * 113.99696 * 270.25456 * 20 19 18 40 40 H 1.08002 * 120.02898 * 179.78952 * 21 19 18 41 41 H 1.08001 * 119.94351 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8187 0.0010 8 6 6.1460 2.8554 1.1874 9 1 5.7180 3.3593 2.0413 10 6 7.3882 2.2449 1.2924 11 7 7.7249 1.2890 0.4526 12 14 8.5822 2.7804 2.6255 13 1 7.9683 3.8644 3.4336 14 1 8.8941 1.6245 3.5041 15 1 9.8334 3.2774 1.9988 16 6 6.1957 2.8561 -1.2672 17 6 6.2914 4.2803 -1.7503 18 6 5.3306 4.7854 -2.6052 19 6 5.4166 6.0980 -3.0451 20 8 4.4699 6.5987 -3.8820 21 6 6.4734 6.8975 -2.6337 22 6 7.4344 6.3862 -1.7835 23 6 8.5821 7.2541 -1.3358 24 9 9.6447 7.1231 -2.2364 25 9 8.1682 8.5897 -1.2939 26 9 8.9991 6.8549 -0.0614 27 6 7.3436 5.0788 -1.3421 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9565 0.7805 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 3.6101 3.2367 0.8893 34 1 3.6108 3.2356 -0.8906 35 1 8.5931 0.8627 0.5258 36 1 7.1981 2.4543 -1.1198 37 1 5.6689 2.2556 -2.0088 38 1 4.5111 4.1600 -2.9269 39 1 4.6696 6.4758 -4.8201 40 1 6.5443 7.9188 -2.9776 41 1 8.0958 4.6809 -0.6770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877710865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:00 Heat of formation + Delta-G solvation = -236.966777 kcal Electronic energy + Delta-G solvation = -31029.227998 eV Core-core repulsion = 26074.289887 eV Total energy + Delta-G solvation = -4954.938111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.95033 -47.46975 -47.40565 -40.09555 -39.63378 -37.08132 -36.35983 -35.64427 -32.21279 -32.15174 -30.22268 -29.43987 -27.46438 -26.02783 -25.80798 -24.41309 -22.18860 -21.72490 -20.82984 -19.88565 -18.45294 -18.29001 -18.04170 -17.35898 -16.94616 -16.70556 -16.25206 -16.12070 -15.96933 -15.51105 -14.86681 -14.64350 -14.29626 -14.19810 -14.11017 -13.86844 -13.82394 -13.61789 -13.57105 -13.37178 -13.13944 -12.89263 -12.46037 -12.27986 -12.18425 -12.00630 -11.77261 -11.58759 -11.36453 -11.29053 -10.92069 -10.61900 -10.55710 -10.54873 -10.28846 -10.13568 -10.08106 -9.99010 -8.79464 -8.72195 -8.34410 -6.92463 -6.03732 -3.55869 1.21780 1.49024 2.58765 2.87206 3.05250 3.26897 3.37633 3.41673 3.67933 3.89456 4.19653 4.34089 4.45274 4.64706 5.07130 5.13765 5.14140 5.18034 5.23596 5.35291 5.46020 5.50243 5.61868 5.73563 5.76430 5.83645 5.91077 6.15509 6.26258 6.34384 6.44522 6.54914 6.58542 6.67012 6.84693 6.97982 6.99944 7.38284 7.65267 7.72843 8.09541 8.26419 8.93178 9.54772 10.09751 10.97904 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.003990 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.535001 B = 7015.225450 C = 9260.819032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.462 3.538 4 O -0.517 6.517 5 C -0.130 4.130 6 C 0.160 3.840 7 N -0.569 5.569 8 C -0.261 4.261 9 H 0.068 0.932 10 C 0.015 3.985 11 N -0.882 5.882 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.287 1.287 15 H -0.283 1.283 16 C 0.169 3.831 17 C -0.059 4.059 18 C -0.113 4.113 19 C 0.095 3.905 20 O -0.496 6.496 21 C -0.119 4.119 22 C -0.173 4.173 23 C 0.509 3.491 24 F -0.181 7.181 25 F -0.182 7.182 26 F -0.173 7.173 27 C -0.056 4.056 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.259 0.741 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.129 0.871 39 H 0.386 0.614 40 H 0.131 0.869 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.145 3.499 -7.803 9.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.305 3.695 4 O -0.406 6.406 5 C -0.170 4.170 6 C 0.033 3.967 7 N -0.287 5.287 8 C -0.390 4.390 9 H 0.085 0.915 10 C -0.186 4.186 11 N -0.523 5.523 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.214 1.214 15 H -0.209 1.209 16 C 0.043 3.957 17 C -0.062 4.062 18 C -0.133 4.133 19 C 0.051 3.949 20 O -0.306 6.306 21 C -0.138 4.138 22 C -0.175 4.175 23 C 0.455 3.545 24 F -0.162 7.162 25 F -0.163 7.163 26 F -0.154 7.154 27 C -0.075 4.075 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.059 0.941 38 H 0.147 0.853 39 H 0.241 0.759 40 H 0.149 0.851 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.471 3.849 -7.231 9.333 hybrid contribution 0.783 0.340 0.332 0.916 sum -3.689 4.189 -6.899 8.874 Atomic orbital electron populations 1.23158 0.77638 1.03025 1.02156 1.86595 1.22573 1.34688 1.84408 1.24640 0.92917 0.80734 0.71188 1.90617 1.67580 1.36378 1.45980 1.22399 0.84112 1.04634 1.05900 1.20802 0.85104 0.90333 1.00441 1.43844 0.99593 1.83113 1.02103 1.19191 1.00892 1.28757 0.90200 0.91482 1.25092 1.00200 0.95207 0.98083 1.69946 1.21725 1.21856 1.38790 0.86400 0.81367 0.78549 0.81698 1.19781 1.21416 1.20929 1.20191 1.02347 0.86757 0.86424 1.21218 0.91581 1.00928 0.92476 1.21605 0.98988 0.94066 0.98618 1.18227 0.89148 0.91486 0.96018 1.84864 1.44565 1.81497 1.19661 1.20880 0.93393 1.00386 0.99144 1.19771 0.96670 0.95970 1.05072 1.18357 0.82615 0.78366 0.75187 1.93198 1.59399 1.95736 1.67881 1.93157 1.90218 1.36692 1.96264 1.93223 1.91239 1.90414 1.40560 1.20973 0.98822 0.90895 0.96797 0.92313 0.88684 0.92255 0.88496 0.87318 0.92567 0.93519 0.93132 0.86619 0.94062 0.85305 0.75943 0.85145 0.84479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.45 16 2 O -0.37 -5.54 10.57 -39.27 -0.41 -5.95 16 3 C 0.46 7.85 7.96 36.01 0.29 8.14 16 4 O -0.52 -9.85 15.73 -18.75 -0.29 -10.15 16 5 C -0.13 -2.30 6.13 -27.88 -0.17 -2.47 16 6 C 0.16 3.14 4.98 -4.04 -0.02 3.12 16 7 N -0.57 -12.43 2.43 -174.61 -0.43 -12.86 16 8 C -0.26 -6.39 9.49 -15.06 -0.14 -6.53 16 9 H 0.07 1.69 7.92 -52.49 -0.42 1.28 16 10 C 0.02 0.37 4.94 -17.43 -0.09 0.28 16 11 N -0.88 -22.32 11.32 55.49 0.63 -21.69 16 12 Si 0.89 20.13 29.61 -169.99 -5.03 15.10 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 C 0.17 3.42 5.38 -5.19 -0.03 3.39 16 17 C -0.06 -1.07 5.46 -104.64 -0.57 -1.64 16 18 C -0.11 -1.83 9.55 -39.43 -0.38 -2.20 16 19 C 0.10 1.43 6.71 -39.22 -0.26 1.17 16 20 O -0.50 -6.36 13.50 -19.46 -0.26 -6.62 16 21 C -0.12 -1.79 9.34 -39.43 -0.37 -2.16 16 22 C -0.17 -2.87 5.45 -104.65 -0.57 -3.44 16 23 C 0.51 8.10 3.36 36.01 0.12 8.23 16 24 F -0.18 -2.78 17.30 2.25 0.04 -2.74 16 25 F -0.18 -2.76 16.46 2.25 0.04 -2.72 16 26 F -0.17 -3.02 16.46 2.25 0.04 -2.98 16 27 C -0.06 -1.03 9.06 -39.56 -0.36 -1.39 16 28 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.11 2.05 8.14 -51.93 -0.42 1.62 16 33 H 0.06 1.16 8.00 -51.93 -0.42 0.75 16 34 H 0.05 0.88 7.95 -51.93 -0.41 0.47 16 35 H 0.26 6.39 8.31 -40.82 -0.34 6.05 16 36 H 0.12 2.65 5.28 -51.93 -0.27 2.38 16 37 H 0.04 0.77 8.03 -51.93 -0.42 0.35 16 38 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 39 H 0.39 2.87 9.06 45.56 0.41 3.29 16 40 H 0.13 1.72 7.60 -52.49 -0.40 1.32 16 41 H 0.14 2.72 7.60 -52.49 -0.40 2.32 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -28.17 371.56 -5.56 -33.73 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -3.99 Total: 5.33 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.48 Total: 5.95 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.20 Total: -34.55 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.97 Total: -22.72 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 0.11 Total: -8.44 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.17 -5.56 -33.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.239 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds