Wall clock time and date at job start Wed Apr 1 2020 04:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 117.00075 * 2 1 4 4 O 1.20824 * 120.00054 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99840 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47032 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47202 * 179.97438 * 6 5 3 8 8 C 1.36934 * 120.00418 * 270.00121 * 7 6 5 9 9 H 1.07997 * 119.99789 * 325.86005 * 8 7 6 10 10 C 1.38810 * 119.99832 * 145.85744 * 8 7 6 11 11 N 1.31616 * 120.00317 * 337.86774 * 10 8 7 12 12 Si 1.86800 * 119.99588 * 157.86244 * 10 8 7 13 13 H 1.48502 * 109.47428 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47267 * 120.00393 * 12 10 8 15 15 H 1.48498 * 109.47254 * 240.00288 * 12 10 8 16 16 C 1.46505 * 119.99600 * 90.00179 * 7 6 5 17 17 C 1.50698 * 109.47138 * 86.20645 * 16 7 6 18 18 C 1.38173 * 119.97505 * 267.84422 * 17 16 7 19 19 C 1.38706 * 119.93953 * 179.74587 * 18 17 16 20 20 O 1.35912 * 120.05144 * 180.25477 * 19 18 17 21 21 C 1.38756 * 119.89381 * 0.50823 * 19 18 17 22 22 C 1.38119 * 119.94297 * 359.76383 * 21 19 18 23 23 C 1.50699 * 119.97198 * 180.02562 * 22 21 19 24 24 F 1.39905 * 109.46830 * 269.98060 * 23 22 21 25 25 F 1.39893 * 109.47289 * 29.98216 * 23 22 21 26 26 F 1.39901 * 109.46896 * 149.98112 * 23 22 21 27 27 C 1.38248 * 119.97147 * 88.11815 * 17 16 7 28 28 H 1.09005 * 109.46724 * 59.99877 * 1 2 3 29 29 H 1.08996 * 109.47297 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47002 * 300.00453 * 1 2 3 31 31 H 1.09004 * 109.47303 * 59.99735 * 5 3 2 32 32 H 1.09005 * 109.46977 * 299.99809 * 5 3 2 33 33 H 1.09004 * 109.47092 * 59.99852 * 6 5 3 34 34 H 1.08999 * 109.47268 * 300.00291 * 6 5 3 35 35 H 0.97001 * 120.00056 * 179.97438 * 11 10 8 36 36 H 1.08994 * 109.47269 * 206.20610 * 16 7 6 37 37 H 1.08998 * 109.46826 * 326.21279 * 16 7 6 38 38 H 1.07994 * 120.02497 * 0.02562 * 18 17 16 39 39 H 0.96697 * 113.99696 * 270.25456 * 20 19 18 40 40 H 1.08002 * 120.02898 * 179.78952 * 21 19 18 41 41 H 1.08001 * 119.94351 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8187 0.0010 8 6 6.1460 2.8554 1.1874 9 1 5.7180 3.3593 2.0413 10 6 7.3882 2.2449 1.2924 11 7 7.7249 1.2890 0.4526 12 14 8.5822 2.7804 2.6255 13 1 7.9683 3.8644 3.4336 14 1 8.8941 1.6245 3.5041 15 1 9.8334 3.2774 1.9988 16 6 6.1957 2.8561 -1.2672 17 6 6.2914 4.2803 -1.7503 18 6 5.3306 4.7854 -2.6052 19 6 5.4166 6.0980 -3.0451 20 8 4.4699 6.5987 -3.8820 21 6 6.4734 6.8975 -2.6337 22 6 7.4344 6.3862 -1.7835 23 6 8.5821 7.2541 -1.3358 24 9 9.6447 7.1231 -2.2364 25 9 8.1682 8.5897 -1.2939 26 9 8.9991 6.8549 -0.0614 27 6 7.3436 5.0788 -1.3421 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9565 0.7805 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 3.6101 3.2367 0.8893 34 1 3.6108 3.2356 -0.8906 35 1 8.5931 0.8627 0.5258 36 1 7.1981 2.4543 -1.1198 37 1 5.6689 2.2556 -2.0088 38 1 4.5111 4.1600 -2.9269 39 1 4.6696 6.4758 -4.8201 40 1 6.5443 7.9188 -2.9776 41 1 8.0958 4.6809 -0.6770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877710865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:59 Heat of formation + Delta-G solvation = -252.021323 kcal Electronic energy + Delta-G solvation = -31029.880812 eV Core-core repulsion = 26074.289887 eV Total energy + Delta-G solvation = -4955.590925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.23083 -48.74641 -48.69108 -41.41708 -40.89056 -38.40657 -37.62896 -37.10412 -33.95786 -33.54593 -31.63204 -30.83728 -28.55674 -27.64205 -27.10496 -25.97317 -23.56275 -23.06798 -22.21738 -21.33261 -19.74284 -19.56582 -19.37902 -18.77918 -18.33880 -18.06993 -17.53883 -17.40873 -17.23729 -16.90021 -16.54438 -15.90665 -15.65425 -15.55477 -15.45957 -15.28551 -15.14980 -14.95001 -14.85880 -14.83764 -14.55823 -14.17169 -13.73286 -13.64665 -13.53958 -13.36321 -13.09928 -13.00962 -12.83475 -12.81038 -12.57420 -12.29142 -12.15466 -11.91853 -11.79378 -11.66232 -11.50689 -11.47085 -10.57325 -10.08612 -9.64861 -8.70720 -7.90245 -5.44551 -0.07394 0.22194 1.22845 1.42940 1.51141 1.57274 1.59116 1.85081 2.38107 2.51722 2.62981 2.93982 3.20688 3.32044 3.37521 3.71532 3.88379 4.05657 4.08259 4.13108 4.24078 4.34502 4.36392 4.40613 4.42902 4.50627 4.71607 4.76891 4.89677 4.91292 5.04986 5.11233 5.21430 5.27016 5.43429 5.53685 5.67458 5.71244 5.78915 6.42598 6.79110 6.84692 7.11028 7.76397 8.27881 9.08248 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.003990 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.535001 B = 7015.225450 C = 9260.819032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.369 6.369 3 C 0.472 3.528 4 O -0.539 6.539 5 C -0.120 4.120 6 C 0.165 3.835 7 N -0.580 5.580 8 C -0.264 4.264 9 H 0.053 0.947 10 C -0.014 4.014 11 N -0.900 5.900 12 Si 0.932 3.068 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.287 1.287 16 C 0.174 3.826 17 C -0.070 4.070 18 C -0.112 4.112 19 C 0.111 3.889 20 O -0.498 6.498 21 C -0.111 4.111 22 C -0.176 4.176 23 C 0.513 3.487 24 F -0.177 7.177 25 F -0.174 7.174 26 F -0.185 7.185 27 C -0.075 4.075 28 H 0.063 0.937 29 H 0.131 0.869 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.256 0.744 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.143 0.857 39 H 0.413 0.587 40 H 0.155 0.845 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 4.212 -9.313 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.316 3.684 4 O -0.429 6.429 5 C -0.160 4.160 6 C 0.038 3.962 7 N -0.299 5.299 8 C -0.395 4.395 9 H 0.070 0.930 10 C -0.213 4.213 11 N -0.543 5.543 12 Si 0.761 3.239 13 H -0.201 1.201 14 H -0.215 1.215 15 H -0.213 1.213 16 C 0.049 3.951 17 C -0.073 4.073 18 C -0.131 4.131 19 C 0.067 3.933 20 O -0.311 6.311 21 C -0.130 4.130 22 C -0.177 4.177 23 C 0.459 3.541 24 F -0.158 7.158 25 F -0.156 7.156 26 F -0.167 7.167 27 C -0.094 4.094 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.161 0.839 39 H 0.273 0.727 40 H 0.173 0.827 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.922 4.559 -8.776 11.527 hybrid contribution 1.100 0.169 0.692 1.310 sum -4.823 4.728 -8.084 10.534 Atomic orbital electron populations 1.23532 0.75114 1.05555 1.02448 1.86556 1.24963 1.33254 1.83794 1.24245 0.92448 0.81002 0.70690 1.90609 1.67949 1.37197 1.47179 1.22099 0.85157 1.03075 1.05665 1.20704 0.83919 0.91493 1.00036 1.43919 1.00355 1.83736 1.01880 1.19178 1.01272 1.28113 0.90893 0.92973 1.25432 1.01018 0.95509 0.99374 1.70016 1.21720 1.22689 1.39826 0.85768 0.80002 0.77905 0.80221 1.20124 1.21529 1.21331 1.20016 1.00746 0.88323 0.86057 1.20935 0.92668 0.99760 0.93951 1.21689 0.98593 0.94966 0.97862 1.18156 0.88808 0.90698 0.95668 1.84806 1.43773 1.81047 1.21501 1.21152 0.92552 1.01417 0.97903 1.19784 0.97339 0.95265 1.05320 1.18262 0.82556 0.78546 0.74740 1.93205 1.59228 1.95749 1.67628 1.93170 1.90132 1.36056 1.96206 1.93200 1.91365 1.90610 1.41483 1.20803 0.98919 0.92087 0.97631 0.91817 0.85107 0.92230 0.87660 0.88655 0.94221 0.92557 0.93462 0.89386 0.92779 0.83923 0.72738 0.82726 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.73 16 2 O -0.37 -10.56 10.57 -51.46 -0.54 -11.10 16 3 C 0.47 15.61 7.96 71.24 0.57 16.17 16 4 O -0.54 -20.01 15.73 21.97 0.35 -19.67 16 5 C -0.12 -4.20 6.13 29.85 0.18 -4.02 16 6 C 0.16 6.48 4.98 86.38 0.43 6.91 16 7 N -0.58 -25.77 2.43 -706.35 -1.72 -27.49 16 8 C -0.26 -13.30 9.49 84.03 0.80 -12.50 16 9 H 0.05 2.73 7.92 -2.91 -0.02 2.71 16 10 C -0.01 -0.73 4.94 84.86 0.42 -0.31 16 11 N -0.90 -46.70 11.32 21.65 0.25 -46.46 16 12 Si 0.93 42.39 29.61 68.60 2.03 44.42 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 14 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 15 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 16 C 0.17 7.14 5.38 85.63 0.46 7.60 16 17 C -0.07 -2.54 5.46 -19.88 -0.11 -2.65 16 18 C -0.11 -3.39 9.55 22.37 0.21 -3.17 16 19 C 0.11 3.00 6.71 22.51 0.15 3.15 16 20 O -0.50 -10.73 13.50 -92.56 -1.25 -11.98 16 21 C -0.11 -3.05 9.34 22.37 0.21 -2.84 16 22 C -0.18 -5.63 5.45 -19.88 -0.11 -5.74 16 23 C 0.51 15.87 3.36 71.24 0.24 16.11 16 24 F -0.18 -5.25 17.30 44.97 0.78 -4.47 16 25 F -0.17 -4.96 16.46 44.97 0.74 -4.22 16 26 F -0.19 -6.49 16.46 44.97 0.74 -5.75 16 27 C -0.08 -2.80 9.06 22.28 0.20 -2.60 16 28 H 0.06 1.24 8.13 -2.38 -0.02 1.22 16 29 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 31 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 32 H 0.10 3.63 8.14 -2.38 -0.02 3.61 16 33 H 0.04 1.67 8.00 -2.38 -0.02 1.65 16 34 H 0.06 2.08 7.95 -2.39 -0.02 2.06 16 35 H 0.26 12.97 8.31 -92.71 -0.77 12.20 16 36 H 0.09 4.17 5.28 -2.39 -0.01 4.16 16 37 H 0.05 2.01 8.03 -2.39 -0.02 1.99 16 38 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.41 4.29 9.06 -74.06 -0.67 3.62 16 40 H 0.16 3.49 7.60 -2.91 -0.02 3.47 16 41 H 0.11 4.69 7.60 -2.91 -0.02 4.67 16 Total: -1.00 -60.57 371.56 6.64 -53.93 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.42 Total: 14.95 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 4.85 Total: 17.85 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -1.47 Total: -73.95 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.45 Total: -42.75 kcal Atomic # 9 Polarization: -16.71 SS G_CDS: 2.26 Total: -14.45 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -60.57 6.64 -53.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.092 kcal (2) G-P(sol) polarization free energy of solvation -60.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds