Wall clock time and date at job start Wed Apr 1 2020 04:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 117.00057 * 2 1 4 4 O 1.20819 * 120.00045 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00177 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47345 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47176 * 175.42468 * 6 5 3 8 8 C 1.36936 * 119.99976 * 280.62917 * 7 6 5 9 9 H 1.08000 * 120.00006 * 3.29096 * 8 7 6 10 10 C 1.38818 * 120.00269 * 183.28925 * 8 7 6 11 11 N 1.31618 * 119.99662 * 37.25063 * 10 8 7 12 12 Si 1.86794 * 120.00064 * 217.24825 * 10 8 7 13 13 H 1.48507 * 109.46944 * 90.00196 * 12 10 8 14 14 H 1.48500 * 109.47079 * 209.99699 * 12 10 8 15 15 H 1.48501 * 109.47521 * 330.00322 * 12 10 8 16 16 C 1.46497 * 120.00270 * 100.90649 * 7 6 5 17 17 C 1.50707 * 109.47113 * 259.72080 * 16 7 6 18 18 C 1.38246 * 119.95211 * 258.12650 * 17 16 7 19 19 C 1.38135 * 120.07791 * 179.76468 * 18 17 16 20 20 C 1.38770 * 119.99403 * 0.53442 * 19 18 17 21 21 O 1.35895 * 120.04286 * 179.70285 * 20 19 18 22 22 C 1.42895 * 117.00421 * 0.02562 * 21 20 19 23 23 F 1.39898 * 109.46890 * 300.00454 * 22 21 20 24 24 F 1.39900 * 109.47095 * 59.99667 * 22 21 20 25 25 C 1.38671 * 119.91383 * 359.71709 * 20 19 18 26 26 C 1.38381 * 119.91964 * 0.02562 * 25 20 19 27 27 F 1.35101 * 119.99762 * 179.97438 * 26 25 20 28 28 H 1.09002 * 109.46698 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47106 * 300.00161 * 1 2 3 30 30 H 1.08995 * 109.46703 * 60.00372 * 1 2 3 31 31 H 1.09002 * 109.47174 * 59.99071 * 5 3 2 32 32 H 1.09000 * 109.46950 * 299.99569 * 5 3 2 33 33 H 1.09004 * 109.47081 * 55.42194 * 6 5 3 34 34 H 1.09006 * 109.46873 * 295.42445 * 6 5 3 35 35 H 0.96995 * 120.00176 * 180.02562 * 11 10 8 36 36 H 1.09005 * 109.46973 * 19.71513 * 16 7 6 37 37 H 1.09001 * 109.47247 * 139.71759 * 16 7 6 38 38 H 1.08004 * 119.96623 * 359.97438 * 18 17 16 39 39 H 1.08005 * 120.00733 * 180.25324 * 19 18 17 40 40 H 1.08996 * 109.47642 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.03765 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 7 5.4590 2.8200 0.1085 8 6 6.0633 2.6647 1.3275 9 1 5.4693 2.4320 2.1989 10 6 7.4394 2.8062 1.4431 11 7 8.0688 3.7194 0.7343 12 14 8.3976 1.7009 2.6046 13 1 8.8338 0.4805 1.8794 14 1 9.5893 2.4287 3.1101 15 1 7.5318 1.3146 3.7475 16 6 6.2709 3.0701 -1.0849 17 6 6.8504 1.7699 -1.5799 18 6 8.1707 1.4573 -1.3148 19 6 8.7031 0.2641 -1.7630 20 6 7.9154 -0.6174 -2.4898 21 8 8.4399 -1.7888 -2.9365 22 6 9.8091 -2.0488 -2.6209 23 9 10.6130 -1.0437 -3.1692 24 9 9.9715 -2.0697 -1.2315 25 6 6.5926 -0.3012 -2.7601 26 6 6.0614 0.8927 -2.3048 27 9 4.7729 1.2025 -2.5676 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 3.9558 0.7808 -0.8908 32 1 3.9564 0.7807 0.8892 33 1 3.5442 3.2561 0.8451 34 1 3.6798 3.2153 -0.9293 35 1 9.0304 3.8181 0.8148 36 1 5.6470 3.5095 -1.8633 37 1 7.0798 3.7572 -0.8366 38 1 8.7857 2.1453 -0.7536 39 1 9.7335 0.0192 -1.5517 40 1 10.1008 -3.0136 -3.0357 41 1 5.9777 -0.9860 -3.3252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877711646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:39 Heat of formation + Delta-G solvation = -214.524459 kcal Electronic energy + Delta-G solvation = -31948.465874 eV Core-core repulsion = 26994.500935 eV Total energy + Delta-G solvation = -4953.964939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.35151 -48.52408 -47.34583 -40.07748 -39.62971 -37.46228 -36.36374 -35.55873 -32.33311 -30.98218 -30.27593 -29.38190 -27.44826 -26.60037 -25.16718 -24.22412 -22.57119 -21.88517 -20.68206 -19.95193 -18.99042 -18.20452 -17.91409 -17.41413 -17.01325 -16.41553 -16.28403 -16.20421 -15.82386 -15.29198 -15.06282 -14.75636 -14.60250 -14.44003 -13.90509 -13.76775 -13.70860 -13.62626 -13.41520 -13.35577 -13.17742 -13.02660 -12.64077 -12.39605 -12.15208 -12.06624 -11.63288 -11.32495 -11.13947 -10.97438 -10.91347 -10.67799 -10.60640 -10.48823 -10.19081 -10.10991 -9.99427 -9.85156 -8.71641 -8.42084 -7.79909 -7.08314 -5.93279 -3.23781 1.59769 1.71889 2.55693 2.60598 3.05494 3.35559 3.43195 3.43599 3.48660 4.01494 4.24393 4.43356 4.60620 4.83056 5.05138 5.13468 5.18037 5.20223 5.24540 5.31173 5.45205 5.52019 5.63794 5.65895 5.78542 5.86746 5.98429 6.26162 6.35251 6.49176 6.55336 6.61922 6.67115 6.78833 6.84201 6.91889 7.16291 7.44319 7.63111 7.69443 8.11089 8.23604 9.00859 9.69883 10.11945 11.02008 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.004529 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.648054 B = 6180.569613 C = 7753.334846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.465 3.535 4 O -0.516 6.516 5 C -0.148 4.148 6 C 0.165 3.835 7 N -0.577 5.577 8 C -0.254 4.254 9 H 0.080 0.920 10 C 0.009 3.991 11 N -0.877 5.877 12 Si 0.870 3.130 13 H -0.282 1.282 14 H -0.292 1.292 15 H -0.279 1.279 16 C 0.152 3.848 17 C -0.109 4.109 18 C -0.034 4.034 19 C -0.204 4.204 20 C 0.107 3.893 21 O -0.324 6.324 22 C 0.412 3.588 23 F -0.200 7.200 24 F -0.198 7.198 25 C -0.180 4.180 26 C 0.121 3.879 27 F -0.133 7.133 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.257 0.743 36 H 0.036 0.964 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.178 0.822 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 -10.850 -7.848 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.309 3.691 4 O -0.404 6.404 5 C -0.188 4.188 6 C 0.038 3.962 7 N -0.295 5.295 8 C -0.382 4.382 9 H 0.098 0.902 10 C -0.189 4.189 11 N -0.522 5.522 12 Si 0.699 3.301 13 H -0.209 1.209 14 H -0.219 1.219 15 H -0.204 1.204 16 C 0.026 3.974 17 C -0.113 4.113 18 C -0.052 4.052 19 C -0.223 4.223 20 C 0.064 3.936 21 O -0.242 6.242 22 C 0.322 3.678 23 F -0.182 7.182 24 F -0.180 7.180 25 C -0.200 4.200 26 C 0.101 3.899 27 F -0.111 7.111 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.158 0.842 38 H 0.167 0.833 39 H 0.146 0.854 40 H 0.194 0.806 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.319 -10.550 -7.894 13.242 hybrid contribution 0.344 -0.834 0.759 1.179 sum -0.974 -11.384 -7.135 13.471 Atomic orbital electron populations 1.23162 0.77560 1.03030 1.02204 1.86577 1.22627 1.34636 1.84471 1.24422 0.92711 0.80757 0.71206 1.90608 1.67517 1.36334 1.45945 1.22646 0.84873 1.04983 1.06311 1.20594 0.84523 0.90481 1.00625 1.44113 0.99556 1.81692 1.04131 1.19198 0.90443 1.41611 0.86936 0.90177 1.24407 0.96758 0.98710 0.99057 1.69885 1.09098 1.29037 1.44135 0.86757 0.79897 0.82536 0.80953 1.20872 1.21932 1.20385 1.20719 0.97817 0.92252 0.86567 1.21150 0.93613 1.00542 0.96002 1.21187 0.94769 0.94820 0.94473 1.21583 1.00548 0.96839 1.03347 1.18284 0.92874 0.85008 0.97438 1.86519 1.25596 1.38065 1.73977 1.23270 0.77335 0.91385 0.75807 1.93095 1.74219 1.65484 1.85363 1.93122 1.94958 1.97003 1.32874 1.19994 0.93753 0.98239 1.07973 1.17234 0.78928 0.94126 0.99612 1.91370 1.34813 1.92988 1.91954 0.88678 0.92238 0.92242 0.87336 0.87906 0.92802 0.92807 0.93229 0.94581 0.84172 0.83293 0.85425 0.80579 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.78 10.57 -39.26 -0.41 -6.19 16 3 C 0.47 8.31 7.96 36.01 0.29 8.60 16 4 O -0.52 -10.17 15.68 -18.74 -0.29 -10.46 16 5 C -0.15 -2.75 5.96 -27.88 -0.17 -2.92 16 6 C 0.17 3.41 4.83 -4.05 -0.02 3.39 16 7 N -0.58 -13.30 2.58 -174.61 -0.45 -13.75 16 8 C -0.25 -6.41 9.39 -15.06 -0.14 -6.55 16 9 H 0.08 2.04 8.04 -52.49 -0.42 1.62 16 10 C 0.01 0.22 3.74 -17.43 -0.07 0.16 16 11 N -0.88 -22.24 8.93 55.49 0.50 -21.75 16 12 Si 0.87 20.42 29.68 -169.99 -5.05 15.38 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 C 0.15 3.37 5.08 -5.19 -0.03 3.34 16 17 C -0.11 -2.25 5.25 -104.53 -0.55 -2.80 16 18 C -0.03 -0.69 8.75 -39.62 -0.35 -1.03 16 19 C -0.20 -3.77 8.26 -39.42 -0.33 -4.10 16 20 C 0.11 1.82 6.48 -39.22 -0.25 1.57 16 21 O -0.32 -4.57 10.43 -19.41 -0.20 -4.77 16 22 C 0.41 4.57 5.98 101.05 0.60 5.18 16 23 F -0.20 -2.53 15.58 2.25 0.04 -2.49 16 24 F -0.20 -2.73 15.58 2.25 0.04 -2.70 16 25 C -0.18 -3.07 9.97 -39.37 -0.39 -3.46 16 26 C 0.12 2.27 6.77 -39.44 -0.27 2.01 16 27 F -0.13 -2.43 13.66 2.25 0.03 -2.40 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 31 H 0.11 2.02 4.60 -51.93 -0.24 1.78 16 32 H 0.10 1.95 8.06 -51.93 -0.42 1.53 16 33 H 0.05 1.16 7.95 -51.93 -0.41 0.74 16 34 H 0.05 1.09 7.70 -51.93 -0.40 0.69 16 35 H 0.26 6.31 8.30 -40.82 -0.34 5.97 16 36 H 0.04 0.75 7.55 -51.93 -0.39 0.36 16 37 H 0.14 3.43 4.83 -51.93 -0.25 3.18 16 38 H 0.15 3.24 5.97 -52.48 -0.31 2.93 16 39 H 0.13 2.23 5.10 -52.48 -0.27 1.97 16 40 H 0.18 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -28.86 351.69 -5.47 -34.33 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.36 Total: 4.65 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.60 Total: 4.85 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.05 Total: -35.49 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.91 Total: -21.43 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 0.10 Total: -7.59 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.05 Total: 15.38 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.86 -5.47 -34.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877711646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.193 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds