Wall clock time and date at job start Wed Apr 1 2020 04:33:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34230 * 117.00057 * 2 1
4 4 O 1.20819 * 120.00045 * 359.97438 * 3 2 1
5 5 C 1.50704 * 120.00177 * 180.02562 * 3 2 1
6 6 C 1.52996 * 109.47345 * 179.97438 * 5 3 2
7 7 N 1.46496 * 109.47176 * 175.42468 * 6 5 3
8 8 C 1.36936 * 119.99976 * 280.62917 * 7 6 5
9 9 H 1.08000 * 120.00006 * 3.29096 * 8 7 6
10 10 C 1.38818 * 120.00269 * 183.28925 * 8 7 6
11 11 N 1.31618 * 119.99662 * 37.25063 * 10 8 7
12 12 Si 1.86794 * 120.00064 * 217.24825 * 10 8 7
13 13 H 1.48507 * 109.46944 * 90.00196 * 12 10 8
14 14 H 1.48500 * 109.47079 * 209.99699 * 12 10 8
15 15 H 1.48501 * 109.47521 * 330.00322 * 12 10 8
16 16 C 1.46497 * 120.00270 * 100.90649 * 7 6 5
17 17 C 1.50707 * 109.47113 * 259.72080 * 16 7 6
18 18 C 1.38246 * 119.95211 * 258.12650 * 17 16 7
19 19 C 1.38135 * 120.07791 * 179.76468 * 18 17 16
20 20 C 1.38770 * 119.99403 * 0.53442 * 19 18 17
21 21 O 1.35895 * 120.04286 * 179.70285 * 20 19 18
22 22 C 1.42895 * 117.00421 * 0.02562 * 21 20 19
23 23 F 1.39898 * 109.46890 * 300.00454 * 22 21 20
24 24 F 1.39900 * 109.47095 * 59.99667 * 22 21 20
25 25 C 1.38671 * 119.91383 * 359.71709 * 20 19 18
26 26 C 1.38381 * 119.91964 * 0.02562 * 25 20 19
27 27 F 1.35101 * 119.99762 * 179.97438 * 26 25 20
28 28 H 1.09002 * 109.46698 * 180.02562 * 1 2 3
29 29 H 1.09003 * 109.47106 * 300.00161 * 1 2 3
30 30 H 1.08995 * 109.46703 * 60.00372 * 1 2 3
31 31 H 1.09002 * 109.47174 * 59.99071 * 5 3 2
32 32 H 1.09000 * 109.46950 * 299.99569 * 5 3 2
33 33 H 1.09004 * 109.47081 * 55.42194 * 6 5 3
34 34 H 1.09006 * 109.46873 * 295.42445 * 6 5 3
35 35 H 0.96995 * 120.00176 * 180.02562 * 11 10 8
36 36 H 1.09005 * 109.46973 * 19.71513 * 16 7 6
37 37 H 1.09001 * 109.47247 * 139.71759 * 16 7 6
38 38 H 1.08004 * 119.96623 * 359.97438 * 18 17 16
39 39 H 1.08005 * 120.00733 * 180.25324 * 19 18 17
40 40 H 1.08996 * 109.47642 * 180.02562 * 22 21 20
41 41 H 1.07998 * 120.03765 * 180.02562 * 25 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4034 2.2093 -0.0005
5 6 3.5664 1.2749 -0.0006
6 6 4.0002 2.7421 -0.0011
7 7 5.4590 2.8200 0.1085
8 6 6.0633 2.6647 1.3275
9 1 5.4693 2.4320 2.1989
10 6 7.4394 2.8062 1.4431
11 7 8.0688 3.7194 0.7343
12 14 8.3976 1.7009 2.6046
13 1 8.8338 0.4805 1.8794
14 1 9.5893 2.4287 3.1101
15 1 7.5318 1.3146 3.7475
16 6 6.2709 3.0701 -1.0849
17 6 6.8504 1.7699 -1.5799
18 6 8.1707 1.4573 -1.3148
19 6 8.7031 0.2641 -1.7630
20 6 7.9154 -0.6174 -2.4898
21 8 8.4399 -1.7888 -2.9365
22 6 9.8091 -2.0488 -2.6209
23 9 10.6130 -1.0437 -3.1692
24 9 9.9715 -2.0697 -1.2315
25 6 6.5926 -0.3012 -2.7601
26 6 6.0614 0.8927 -2.3048
27 9 4.7729 1.2025 -2.5676
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5139 0.8900
30 1 -0.3632 0.5138 -0.8900
31 1 3.9558 0.7808 -0.8908
32 1 3.9564 0.7807 0.8892
33 1 3.5442 3.2561 0.8451
34 1 3.6798 3.2153 -0.9293
35 1 9.0304 3.8181 0.8148
36 1 5.6470 3.5095 -1.8633
37 1 7.0798 3.7572 -0.8366
38 1 8.7857 2.1453 -0.7536
39 1 9.7335 0.0192 -1.5517
40 1 10.1008 -3.0136 -3.0357
41 1 5.9777 -0.9860 -3.3252
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000877711646.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:33:39
Heat of formation + Delta-G solvation = -214.524459 kcal
Electronic energy + Delta-G solvation = -31948.465874 eV
Core-core repulsion = 26994.500935 eV
Total energy + Delta-G solvation = -4953.964939 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.118 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-49.35151 -48.52408 -47.34583 -40.07748 -39.62971 -37.46228 -36.36374 -35.55873
-32.33311 -30.98218 -30.27593 -29.38190 -27.44826 -26.60037 -25.16718 -24.22412
-22.57119 -21.88517 -20.68206 -19.95193 -18.99042 -18.20452 -17.91409 -17.41413
-17.01325 -16.41553 -16.28403 -16.20421 -15.82386 -15.29198 -15.06282 -14.75636
-14.60250 -14.44003 -13.90509 -13.76775 -13.70860 -13.62626 -13.41520 -13.35577
-13.17742 -13.02660 -12.64077 -12.39605 -12.15208 -12.06624 -11.63288 -11.32495
-11.13947 -10.97438 -10.91347 -10.67799 -10.60640 -10.48823 -10.19081 -10.10991
-9.99427 -9.85156 -8.71641 -8.42084 -7.79909 -7.08314 -5.93279 -3.23781
1.59769 1.71889 2.55693 2.60598 3.05494 3.35559 3.43195 3.43599
3.48660 4.01494 4.24393 4.43356 4.60620 4.83056 5.05138 5.13468
5.18037 5.20223 5.24540 5.31173 5.45205 5.52019 5.63794 5.65895
5.78542 5.86746 5.98429 6.26162 6.35251 6.49176 6.55336 6.61922
6.67115 6.78833 6.84201 6.91889 7.16291 7.44319 7.63111 7.69443
8.11089 8.23604 9.00859 9.69883 10.11945 11.02008
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.009698 B = 0.004529 C = 0.003610
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2886.648054 B = 6180.569613 C = 7753.334846
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.366 6.366
3 C 0.465 3.535
4 O -0.516 6.516
5 C -0.148 4.148
6 C 0.165 3.835
7 N -0.577 5.577
8 C -0.254 4.254
9 H 0.080 0.920
10 C 0.009 3.991
11 N -0.877 5.877
12 Si 0.870 3.130
13 H -0.282 1.282
14 H -0.292 1.292
15 H -0.279 1.279
16 C 0.152 3.848
17 C -0.109 4.109
18 C -0.034 4.034
19 C -0.204 4.204
20 C 0.107 3.893
21 O -0.324 6.324
22 C 0.412 3.588
23 F -0.200 7.200
24 F -0.198 7.198
25 C -0.180 4.180
26 C 0.121 3.879
27 F -0.133 7.133
28 H 0.095 0.905
29 H 0.059 0.941
30 H 0.059 0.941
31 H 0.109 0.891
32 H 0.103 0.897
33 H 0.054 0.946
34 H 0.053 0.947
35 H 0.257 0.743
36 H 0.036 0.964
37 H 0.142 0.858
38 H 0.150 0.850
39 H 0.128 0.872
40 H 0.178 0.822
41 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.116 -10.850 -7.848 13.437
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.283 6.283
3 C 0.309 3.691
4 O -0.404 6.404
5 C -0.188 4.188
6 C 0.038 3.962
7 N -0.295 5.295
8 C -0.382 4.382
9 H 0.098 0.902
10 C -0.189 4.189
11 N -0.522 5.522
12 Si 0.699 3.301
13 H -0.209 1.209
14 H -0.219 1.219
15 H -0.204 1.204
16 C 0.026 3.974
17 C -0.113 4.113
18 C -0.052 4.052
19 C -0.223 4.223
20 C 0.064 3.936
21 O -0.242 6.242
22 C 0.322 3.678
23 F -0.182 7.182
24 F -0.180 7.180
25 C -0.200 4.200
26 C 0.101 3.899
27 F -0.111 7.111
28 H 0.113 0.887
29 H 0.078 0.922
30 H 0.078 0.922
31 H 0.127 0.873
32 H 0.121 0.879
33 H 0.072 0.928
34 H 0.072 0.928
35 H 0.068 0.932
36 H 0.054 0.946
37 H 0.158 0.842
38 H 0.167 0.833
39 H 0.146 0.854
40 H 0.194 0.806
41 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -1.319 -10.550 -7.894 13.242
hybrid contribution 0.344 -0.834 0.759 1.179
sum -0.974 -11.384 -7.135 13.471
Atomic orbital electron populations
1.23162 0.77560 1.03030 1.02204 1.86577 1.22627 1.34636 1.84471
1.24422 0.92711 0.80757 0.71206 1.90608 1.67517 1.36334 1.45945
1.22646 0.84873 1.04983 1.06311 1.20594 0.84523 0.90481 1.00625
1.44113 0.99556 1.81692 1.04131 1.19198 0.90443 1.41611 0.86936
0.90177 1.24407 0.96758 0.98710 0.99057 1.69885 1.09098 1.29037
1.44135 0.86757 0.79897 0.82536 0.80953 1.20872 1.21932 1.20385
1.20719 0.97817 0.92252 0.86567 1.21150 0.93613 1.00542 0.96002
1.21187 0.94769 0.94820 0.94473 1.21583 1.00548 0.96839 1.03347
1.18284 0.92874 0.85008 0.97438 1.86519 1.25596 1.38065 1.73977
1.23270 0.77335 0.91385 0.75807 1.93095 1.74219 1.65484 1.85363
1.93122 1.94958 1.97003 1.32874 1.19994 0.93753 0.98239 1.07973
1.17234 0.78928 0.94126 0.99612 1.91370 1.34813 1.92988 1.91954
0.88678 0.92238 0.92242 0.87336 0.87906 0.92802 0.92807 0.93229
0.94581 0.84172 0.83293 0.85425 0.80579 0.84743
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.41 10.56 101.05 1.07 1.47 16
2 O -0.37 -5.78 10.57 -39.26 -0.41 -6.19 16
3 C 0.47 8.31 7.96 36.01 0.29 8.60 16
4 O -0.52 -10.17 15.68 -18.74 -0.29 -10.46 16
5 C -0.15 -2.75 5.96 -27.88 -0.17 -2.92 16
6 C 0.17 3.41 4.83 -4.05 -0.02 3.39 16
7 N -0.58 -13.30 2.58 -174.61 -0.45 -13.75 16
8 C -0.25 -6.41 9.39 -15.06 -0.14 -6.55 16
9 H 0.08 2.04 8.04 -52.49 -0.42 1.62 16
10 C 0.01 0.22 3.74 -17.43 -0.07 0.16 16
11 N -0.88 -22.24 8.93 55.49 0.50 -21.75 16
12 Si 0.87 20.42 29.68 -169.99 -5.05 15.38 16
13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16
14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
16 C 0.15 3.37 5.08 -5.19 -0.03 3.34 16
17 C -0.11 -2.25 5.25 -104.53 -0.55 -2.80 16
18 C -0.03 -0.69 8.75 -39.62 -0.35 -1.03 16
19 C -0.20 -3.77 8.26 -39.42 -0.33 -4.10 16
20 C 0.11 1.82 6.48 -39.22 -0.25 1.57 16
21 O -0.32 -4.57 10.43 -19.41 -0.20 -4.77 16
22 C 0.41 4.57 5.98 101.05 0.60 5.18 16
23 F -0.20 -2.53 15.58 2.25 0.04 -2.49 16
24 F -0.20 -2.73 15.58 2.25 0.04 -2.70 16
25 C -0.18 -3.07 9.97 -39.37 -0.39 -3.46 16
26 C 0.12 2.27 6.77 -39.44 -0.27 2.01 16
27 F -0.13 -2.43 13.66 2.25 0.03 -2.40 16
28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16
30 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16
31 H 0.11 2.02 4.60 -51.93 -0.24 1.78 16
32 H 0.10 1.95 8.06 -51.93 -0.42 1.53 16
33 H 0.05 1.16 7.95 -51.93 -0.41 0.74 16
34 H 0.05 1.09 7.70 -51.93 -0.40 0.69 16
35 H 0.26 6.31 8.30 -40.82 -0.34 5.97 16
36 H 0.04 0.75 7.55 -51.93 -0.39 0.36 16
37 H 0.14 3.43 4.83 -51.93 -0.25 3.18 16
38 H 0.15 3.24 5.97 -52.48 -0.31 2.93 16
39 H 0.13 2.23 5.10 -52.48 -0.27 1.97 16
40 H 0.18 0.93 8.14 -51.93 -0.42 0.50 16
41 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16
LS Contribution 351.69 15.07 5.30 5.30
Total: -1.00 -28.86 351.69 -5.47 -34.33
By element:
Atomic # 1 Polarization: 9.02 SS G_CDS: -4.36 Total: 4.65 kcal
Atomic # 6 Polarization: 5.45 SS G_CDS: -0.60 Total: 4.85 kcal
Atomic # 7 Polarization: -35.54 SS G_CDS: 0.05 Total: -35.49 kcal
Atomic # 8 Polarization: -20.51 SS G_CDS: -0.91 Total: -21.43 kcal
Atomic # 9 Polarization: -7.70 SS G_CDS: 0.10 Total: -7.59 kcal
Atomic # 14 Polarization: 20.42 SS G_CDS: -5.05 Total: 15.38 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -28.86 -5.47 -34.33 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000877711646.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -180.193 kcal
(2) G-P(sol) polarization free energy of solvation -28.861 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.055 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.470 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.331 kcal
(6) G-S(sol) free energy of system = (1) + (5) -214.524 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds