Wall clock time and date at job start Wed Apr 1 2020 04:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40082 * 126.03742 * 2 1 4 4 C 1.30840 * 108.20746 * 180.26319 * 3 2 1 5 5 C 1.39873 * 108.20183 * 359.97438 * 4 3 2 6 6 C 1.34951 * 126.03622 * 180.30254 * 2 1 3 7 7 C 1.50694 * 126.12874 * 359.76401 * 6 2 1 8 8 H 1.09006 * 109.51586 * 25.09497 * 7 6 2 9 9 C 1.53291 * 109.51311 * 264.99718 * 7 6 2 10 10 N 1.47148 * 108.38846 * 187.77455 * 9 7 6 11 11 C 1.34781 * 120.98259 * 230.55562 * 10 9 7 12 12 O 1.21755 * 120.00030 * 355.65585 * 11 10 9 13 13 C 1.46235 * 119.99916 * 175.65774 * 11 10 9 14 14 S 1.75672 * 125.23067 * 48.47571 * 13 11 10 15 15 C 1.75467 * 92.09368 * 179.97438 * 14 13 11 16 16 C 1.32764 * 111.36336 * 0.02562 * 15 14 13 17 17 C 1.39547 * 125.22763 * 228.17222 * 13 11 10 18 18 C 1.40542 * 123.71407 * 0.02562 * 17 13 11 19 19 H 1.07994 * 119.99981 * 18.94999 * 18 17 13 20 20 C 1.40309 * 119.99684 * 198.95041 * 18 17 13 21 21 N 1.30634 * 120.00231 * 14.31491 * 20 18 17 22 22 Si 1.86797 * 119.99633 * 194.31860 * 20 18 17 23 23 H 1.48505 * 109.47412 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47365 * 120.00049 * 22 20 18 25 25 H 1.48503 * 109.46791 * 239.99918 * 22 20 18 26 26 C 1.47151 * 118.03738 * 50.53133 * 10 9 7 27 27 C 1.53295 * 108.38288 * 309.46848 * 26 10 9 28 28 O 1.42961 * 109.51337 * 145.24920 * 7 6 2 29 29 H 1.09006 * 109.47144 * 269.69509 * 1 2 3 30 30 H 1.08998 * 109.47158 * 29.69064 * 1 2 3 31 31 H 1.09000 * 109.47238 * 149.69791 * 1 2 3 32 32 H 1.07998 * 125.90132 * 180.02562 * 4 3 2 33 33 H 1.07999 * 126.03909 * 180.02562 * 5 4 3 34 34 H 1.09008 * 109.68389 * 307.49592 * 9 7 6 35 35 H 1.09000 * 109.68670 * 68.00939 * 9 7 6 36 36 H 1.08000 * 124.31983 * 180.02562 * 15 14 13 37 37 H 1.08010 * 122.78480 * 180.02562 * 16 15 14 38 38 H 0.97002 * 119.99814 * 179.97438 * 21 20 18 39 39 H 1.09005 * 109.68157 * 69.19021 * 26 10 9 40 40 H 1.09000 * 109.68773 * 189.74601 * 26 10 9 41 41 H 1.09008 * 109.51340 * 172.22709 * 27 26 10 42 42 H 1.09004 * 109.51477 * 292.32647 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0057 5 6 3.5437 -0.6666 -0.0089 6 6 2.2589 -1.0913 -0.0058 7 6 1.7973 -2.5258 -0.0083 8 1 0.7986 -2.5862 -0.4409 9 6 1.7653 -3.0559 1.4296 10 7 1.4953 -4.5017 1.3854 11 6 0.5201 -5.0488 2.1380 12 8 -0.0999 -4.3587 2.9265 13 6 0.2068 -6.4712 2.0074 14 16 1.3854 -7.7738 2.0198 15 6 0.1376 -8.9912 1.8206 16 6 -1.0685 -8.4407 1.7513 17 6 -1.0749 -7.0029 1.8598 18 6 -2.2430 -6.2225 1.8173 19 1 -2.1800 -5.1678 1.5937 20 6 -3.4911 -6.8137 2.0654 21 7 -3.5554 -8.0023 2.6037 22 14 -5.0606 -5.9013 1.6258 23 1 -4.7177 -4.5832 1.0338 24 1 -5.8381 -6.6985 0.6433 25 1 -5.8738 -5.6965 2.8513 26 6 2.3212 -5.3326 0.4950 27 6 2.3261 -4.6916 -0.8975 28 8 2.7025 -3.3173 -0.7817 29 1 -0.3634 -0.0055 1.0277 30 1 -0.3633 0.8927 -0.5090 31 1 -0.3634 -0.8873 -0.5185 32 1 4.4054 1.3710 -0.0068 33 1 4.4211 -1.2963 -0.0134 34 1 2.7280 -2.8767 1.9086 35 1 0.9774 -2.5518 1.9894 36 1 0.3265 -10.0529 1.7619 37 1 -1.9706 -9.0220 1.6291 38 1 -4.4183 -8.4108 2.7755 39 1 3.3398 -5.3827 0.8797 40 1 1.9010 -6.3367 0.4354 41 1 3.0404 -5.2122 -1.5355 42 1 1.3298 -4.7615 -1.3341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887584651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:45 Heat of formation + Delta-G solvation = 37.930626 kcal Electronic energy + Delta-G solvation = -28308.442502 eV Core-core repulsion = 24382.327199 eV Total energy + Delta-G solvation = -3926.115303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36108 -39.59132 -37.71942 -36.09038 -34.11349 -33.50628 -33.14100 -32.35882 -29.47114 -29.04387 -27.61010 -26.78286 -25.98448 -24.10410 -22.71868 -21.73773 -21.04467 -19.79322 -19.59357 -18.77440 -17.52742 -16.78608 -16.36805 -16.06459 -15.67887 -15.54507 -15.27771 -14.88369 -14.82282 -14.55205 -14.01070 -13.87784 -13.74293 -13.64424 -12.81152 -12.62485 -12.57805 -12.49481 -12.45351 -12.40244 -11.90223 -11.73707 -11.52606 -11.35440 -11.12163 -10.94207 -10.75174 -10.63055 -10.47453 -10.25692 -10.07462 -9.68971 -9.39555 -9.30565 -8.84820 -8.56442 -8.05146 -7.60247 -7.18117 -7.12774 -4.61892 1.74489 2.13010 2.36173 2.80095 2.85115 2.90998 2.96656 2.98779 3.33577 3.52628 3.66480 3.69944 3.78208 4.20956 4.50601 4.60873 4.85442 4.89362 5.09509 5.09787 5.13455 5.21656 5.36821 5.37874 5.44273 5.61488 5.66802 5.73322 5.84847 5.95227 5.97296 6.14385 6.17155 6.33867 6.62796 6.72558 6.86317 6.99124 7.08192 7.10299 7.12963 7.34276 7.60969 7.65440 8.07923 8.20718 8.44898 8.57519 9.22731 9.78715 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003717 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.132086 B = 7531.138063 C = 9248.811415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.366 5.366 3 N -0.295 5.295 4 C 0.041 3.959 5 C -0.244 4.244 6 C 0.090 3.910 7 C 0.147 3.853 8 H 0.072 0.928 9 C 0.099 3.901 10 N -0.626 5.626 11 C 0.624 3.376 12 O -0.550 6.550 13 C -0.444 4.444 14 S -0.025 6.025 15 C -0.216 4.216 16 C -0.098 4.098 17 C 0.144 3.856 18 C -0.393 4.393 19 H 0.088 0.912 20 C 0.074 3.926 21 N -0.776 5.776 22 Si 0.920 3.080 23 H -0.256 1.256 24 H -0.268 1.268 25 H -0.269 1.269 26 C 0.067 3.933 27 C 0.051 3.949 28 O -0.370 6.370 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.184 0.816 33 H 0.150 0.850 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.288 0.712 39 H 0.066 0.934 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 5.792 -7.513 11.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.149 5.149 3 N -0.116 5.116 4 C -0.144 4.144 5 C -0.273 4.273 6 C -0.038 4.038 7 C 0.086 3.914 8 H 0.090 0.910 9 C -0.026 4.026 10 N -0.363 5.363 11 C 0.418 3.582 12 O -0.429 6.429 13 C -0.563 4.563 14 S 0.231 5.769 15 C -0.349 4.349 16 C -0.130 4.130 17 C 0.133 3.867 18 C -0.424 4.424 19 H 0.106 0.894 20 C -0.148 4.148 21 N -0.400 5.400 22 Si 0.743 3.257 23 H -0.180 1.180 24 H -0.193 1.193 25 H -0.194 1.194 26 C -0.058 4.058 27 C -0.026 4.026 28 O -0.288 6.288 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.201 0.799 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.139 0.861 41 H 0.125 0.875 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.143 6.961 -6.910 12.134 hybrid contribution -1.812 -0.641 -0.130 1.926 sum 5.331 6.320 -7.041 10.860 Atomic orbital electron populations 1.21948 0.74170 1.04536 1.04009 1.48430 1.06577 1.02949 1.56986 1.77358 1.01943 1.07508 1.24835 1.23851 0.95179 0.95113 1.00280 1.21236 0.96423 0.94582 1.15073 1.20422 0.91707 0.88971 1.02677 1.20559 0.92943 0.84918 0.92938 0.91030 1.21921 1.02835 0.83008 0.94787 1.48152 1.36801 1.06093 1.45209 1.17061 0.76603 0.86447 0.78096 1.90685 1.51412 1.63886 1.36924 1.22330 0.95460 0.92514 1.45973 1.82874 1.12498 0.98377 1.83108 1.25066 0.96986 1.01105 1.11757 1.21727 0.96862 0.95180 0.99225 1.17786 0.90918 0.90470 0.87492 1.19473 0.89433 0.96966 1.36565 0.89401 1.26203 1.02006 0.94724 0.91874 1.69663 1.28597 1.14405 1.27313 0.86042 0.79548 0.80701 0.79376 1.17981 1.19316 1.19382 1.22693 0.95834 0.97792 0.89473 1.23084 1.01410 0.81067 0.97064 1.87908 1.48817 1.20375 1.71689 0.90161 0.89073 0.89428 0.79929 0.83188 0.91149 0.88557 0.84422 0.83564 0.90050 0.91594 0.86124 0.87460 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 11.27 59.85 0.67 1.68 16 2 N -0.37 -5.01 4.01 -63.89 -0.26 -5.26 16 3 N -0.29 -4.18 12.58 30.63 0.39 -3.79 16 4 C 0.04 0.50 12.03 -17.36 -0.21 0.29 16 5 C -0.24 -3.19 10.36 -40.01 -0.41 -3.61 16 6 C 0.09 1.27 6.00 -82.26 -0.49 0.77 16 7 C 0.15 2.13 3.03 -27.74 -0.08 2.05 16 8 H 0.07 1.04 6.95 -51.93 -0.36 0.68 16 9 C 0.10 1.64 5.89 -3.54 -0.02 1.62 16 10 N -0.63 -11.81 3.02 -173.97 -0.53 -12.34 16 11 C 0.62 14.65 7.06 -13.05 -0.09 14.55 16 12 O -0.55 -14.65 15.88 5.14 0.08 -14.56 16 13 C -0.44 -10.63 5.43 -35.88 -0.19 -10.83 16 14 S -0.02 -0.50 20.28 -107.50 -2.18 -2.68 16 15 C -0.22 -4.42 11.07 28.86 0.32 -4.10 16 16 C -0.10 -2.26 9.07 -39.12 -0.35 -2.62 16 17 C 0.14 3.64 5.71 -106.20 -0.61 3.03 16 18 C -0.39 -10.04 8.61 -37.94 -0.33 -10.37 16 19 H 0.09 2.31 7.34 -52.49 -0.39 1.93 16 20 C 0.07 1.72 5.36 -17.28 -0.09 1.63 16 21 N -0.78 -18.15 10.78 55.57 0.60 -17.55 16 22 Si 0.92 17.55 29.59 -169.99 -5.03 12.52 16 23 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 24 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 25 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 26 C 0.07 1.05 6.05 -3.53 -0.02 1.03 16 27 C 0.05 0.68 6.98 37.31 0.26 0.94 16 28 O -0.37 -5.29 10.07 -35.23 -0.35 -5.65 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.85 6.98 -51.93 -0.36 0.49 16 32 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 35 H 0.10 1.73 7.11 -51.93 -0.37 1.36 16 36 H 0.14 2.38 8.06 -52.49 -0.42 1.96 16 37 H 0.15 3.38 6.27 -52.48 -0.33 3.05 16 38 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.12 2.05 4.40 -36.48 -0.16 1.89 16 41 H 0.11 1.11 8.14 -51.92 -0.42 0.69 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -30.52 361.81 -8.39 -38.91 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.91 Total: 8.89 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.66 Total: -3.93 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.20 Total: -38.94 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.27 Total: -20.21 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -2.18 Total: -2.68 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.52 -8.39 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887584651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.841 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds