Wall clock time and date at job start Wed Apr 1 2020 04:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40082 * 126.03742 * 2 1 4 4 C 1.30840 * 108.20746 * 180.26319 * 3 2 1 5 5 C 1.39873 * 108.20183 * 359.97438 * 4 3 2 6 6 C 1.34951 * 126.03622 * 180.30254 * 2 1 3 7 7 C 1.50694 * 126.12874 * 359.76401 * 6 2 1 8 8 H 1.09006 * 109.51586 * 25.09497 * 7 6 2 9 9 C 1.53291 * 109.51311 * 264.99718 * 7 6 2 10 10 N 1.47148 * 108.38846 * 187.77455 * 9 7 6 11 11 C 1.34781 * 120.98259 * 230.55562 * 10 9 7 12 12 O 1.21755 * 120.00030 * 355.65585 * 11 10 9 13 13 C 1.46235 * 119.99916 * 175.65774 * 11 10 9 14 14 S 1.75672 * 125.23067 * 48.47571 * 13 11 10 15 15 C 1.75467 * 92.09368 * 179.97438 * 14 13 11 16 16 C 1.32764 * 111.36336 * 0.02562 * 15 14 13 17 17 C 1.39547 * 125.22763 * 228.17222 * 13 11 10 18 18 C 1.40542 * 123.71407 * 0.02562 * 17 13 11 19 19 H 1.07994 * 119.99981 * 18.94999 * 18 17 13 20 20 C 1.40309 * 119.99684 * 198.95041 * 18 17 13 21 21 N 1.30634 * 120.00231 * 14.31491 * 20 18 17 22 22 Si 1.86797 * 119.99633 * 194.31860 * 20 18 17 23 23 H 1.48505 * 109.47412 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47365 * 120.00049 * 22 20 18 25 25 H 1.48503 * 109.46791 * 239.99918 * 22 20 18 26 26 C 1.47151 * 118.03738 * 50.53133 * 10 9 7 27 27 C 1.53295 * 108.38288 * 309.46848 * 26 10 9 28 28 O 1.42961 * 109.51337 * 145.24920 * 7 6 2 29 29 H 1.09006 * 109.47144 * 269.69509 * 1 2 3 30 30 H 1.08998 * 109.47158 * 29.69064 * 1 2 3 31 31 H 1.09000 * 109.47238 * 149.69791 * 1 2 3 32 32 H 1.07998 * 125.90132 * 180.02562 * 4 3 2 33 33 H 1.07999 * 126.03909 * 180.02562 * 5 4 3 34 34 H 1.09008 * 109.68389 * 307.49592 * 9 7 6 35 35 H 1.09000 * 109.68670 * 68.00939 * 9 7 6 36 36 H 1.08000 * 124.31983 * 180.02562 * 15 14 13 37 37 H 1.08010 * 122.78480 * 180.02562 * 16 15 14 38 38 H 0.97002 * 119.99814 * 179.97438 * 21 20 18 39 39 H 1.09005 * 109.68157 * 69.19021 * 26 10 9 40 40 H 1.09000 * 109.68773 * 189.74601 * 26 10 9 41 41 H 1.09008 * 109.51340 * 172.22709 * 27 26 10 42 42 H 1.09004 * 109.51477 * 292.32647 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0057 5 6 3.5437 -0.6666 -0.0089 6 6 2.2589 -1.0913 -0.0058 7 6 1.7973 -2.5258 -0.0083 8 1 0.7986 -2.5862 -0.4409 9 6 1.7653 -3.0559 1.4296 10 7 1.4953 -4.5017 1.3854 11 6 0.5201 -5.0488 2.1380 12 8 -0.0999 -4.3587 2.9265 13 6 0.2068 -6.4712 2.0074 14 16 1.3854 -7.7738 2.0198 15 6 0.1376 -8.9912 1.8206 16 6 -1.0685 -8.4407 1.7513 17 6 -1.0749 -7.0029 1.8598 18 6 -2.2430 -6.2225 1.8173 19 1 -2.1800 -5.1678 1.5937 20 6 -3.4911 -6.8137 2.0654 21 7 -3.5554 -8.0023 2.6037 22 14 -5.0606 -5.9013 1.6258 23 1 -4.7177 -4.5832 1.0338 24 1 -5.8381 -6.6985 0.6433 25 1 -5.8738 -5.6965 2.8513 26 6 2.3212 -5.3326 0.4950 27 6 2.3261 -4.6916 -0.8975 28 8 2.7025 -3.3173 -0.7817 29 1 -0.3634 -0.0055 1.0277 30 1 -0.3633 0.8927 -0.5090 31 1 -0.3634 -0.8873 -0.5185 32 1 4.4054 1.3710 -0.0068 33 1 4.4211 -1.2963 -0.0134 34 1 2.7280 -2.8767 1.9086 35 1 0.9774 -2.5518 1.9894 36 1 0.3265 -10.0529 1.7619 37 1 -1.9706 -9.0220 1.6291 38 1 -4.4183 -8.4108 2.7755 39 1 3.3398 -5.3827 0.8797 40 1 1.9010 -6.3367 0.4354 41 1 3.0404 -5.2122 -1.5355 42 1 1.3298 -4.7615 -1.3341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887584651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:44 Heat of formation + Delta-G solvation = 18.906790 kcal Electronic energy + Delta-G solvation = -28309.267437 eV Core-core repulsion = 24382.327199 eV Total energy + Delta-G solvation = -3926.940238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.39502 -41.01579 -39.26671 -37.83456 -35.66370 -34.90687 -34.49662 -33.48139 -31.03153 -30.36109 -29.15133 -27.73869 -27.52142 -25.41543 -24.23944 -23.22193 -22.07249 -21.22671 -20.85282 -20.49272 -18.96847 -18.04769 -17.88041 -17.50076 -17.18401 -16.90218 -16.76341 -16.14141 -16.01907 -15.83325 -15.47229 -15.41645 -14.86583 -14.60475 -14.25633 -14.21403 -14.09456 -13.84871 -13.65525 -13.54840 -13.31075 -13.26079 -13.04388 -12.84370 -12.57289 -12.49858 -12.10784 -12.04926 -11.90104 -11.74690 -11.41986 -11.26269 -11.03680 -10.68838 -10.40353 -9.67922 -9.50248 -9.34307 -8.87589 -8.84477 -6.45171 0.38240 0.69815 1.27664 1.30469 1.33420 1.39553 1.47270 1.59798 1.80847 2.00008 2.05720 2.13711 2.43520 2.58699 3.25521 3.47408 3.54299 3.67066 3.74852 3.95543 4.08868 4.20157 4.26128 4.30950 4.37344 4.46629 4.51704 4.56429 4.64106 4.71820 4.74574 4.85418 4.91079 4.97007 5.16075 5.27667 5.36152 5.52168 5.59791 5.70569 5.83377 5.84256 5.99209 6.25490 6.48116 6.62344 6.66305 6.77356 7.45312 8.08237 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003717 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.132086 B = 7531.138063 C = 9248.811415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.375 5.375 3 N -0.319 5.319 4 C 0.045 3.955 5 C -0.246 4.246 6 C 0.073 3.927 7 C 0.161 3.839 8 H 0.067 0.933 9 C 0.101 3.899 10 N -0.621 5.621 11 C 0.615 3.385 12 O -0.597 6.597 13 C -0.474 4.474 14 S 0.033 5.967 15 C -0.201 4.201 16 C -0.128 4.128 17 C 0.118 3.882 18 C -0.432 4.432 19 H 0.063 0.937 20 C 0.041 3.959 21 N -0.796 5.796 22 Si 0.984 3.016 23 H -0.266 1.266 24 H -0.247 1.247 25 H -0.264 1.264 26 C 0.062 3.938 27 C 0.056 3.944 28 O -0.367 6.367 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.219 0.781 33 H 0.163 0.837 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.176 0.824 37 H 0.141 0.859 38 H 0.300 0.700 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.147 0.853 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.359 5.420 -8.784 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.159 5.159 3 N -0.141 5.141 4 C -0.139 4.139 5 C -0.276 4.276 6 C -0.055 4.055 7 C 0.100 3.900 8 H 0.085 0.915 9 C -0.023 4.023 10 N -0.356 5.356 11 C 0.409 3.591 12 O -0.481 6.481 13 C -0.592 4.592 14 S 0.290 5.710 15 C -0.335 4.335 16 C -0.160 4.160 17 C 0.107 3.893 18 C -0.463 4.463 19 H 0.081 0.919 20 C -0.179 4.179 21 N -0.420 5.420 22 Si 0.804 3.196 23 H -0.190 1.190 24 H -0.171 1.171 25 H -0.188 1.188 26 C -0.061 4.061 27 C -0.021 4.021 28 O -0.285 6.285 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.235 0.765 33 H 0.181 0.819 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.193 0.807 37 H 0.159 0.841 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.128 0.872 41 H 0.165 0.835 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.649 6.574 -8.215 13.620 hybrid contribution -2.083 -0.543 0.298 2.173 sum 6.566 6.031 -7.918 11.923 Atomic orbital electron populations 1.22122 0.73172 1.05640 1.04306 1.48662 1.07382 1.02767 1.57039 1.77330 1.02904 1.08094 1.25743 1.24447 0.95592 0.95261 0.98648 1.21506 0.96361 0.95284 1.14407 1.20442 0.92477 0.88676 1.03906 1.20302 0.93013 0.85467 0.91239 0.91495 1.21991 1.02375 0.81502 0.96423 1.48105 1.35722 1.07406 1.44325 1.17229 0.77175 0.86481 0.78174 1.90639 1.53451 1.64760 1.39212 1.22725 0.96812 0.94079 1.45546 1.82507 1.10399 0.96038 1.82047 1.25538 0.96221 1.03065 1.08637 1.21611 0.97854 0.94274 1.02278 1.18193 0.91460 0.91880 0.87752 1.19494 0.91300 0.96128 1.39357 0.91881 1.26889 1.04125 0.95567 0.91280 1.69653 1.30027 1.15183 1.27161 0.85120 0.75816 0.79164 0.79508 1.19012 1.17094 1.18835 1.22904 0.95781 0.97020 0.90442 1.23200 1.02480 0.80648 0.95788 1.87923 1.48621 1.20707 1.71266 0.90282 0.87400 0.88946 0.76454 0.81937 0.90188 0.90633 0.80717 0.84118 0.88865 0.89754 0.87235 0.83550 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.89 11.27 127.77 1.44 3.33 16 2 N -0.37 -10.09 4.01 -356.03 -1.43 -11.51 16 3 N -0.32 -8.67 12.58 -57.02 -0.72 -9.38 16 4 C 0.05 1.01 12.03 85.24 1.03 2.04 16 5 C -0.25 -5.99 10.36 21.99 0.23 -5.76 16 6 C 0.07 1.99 6.00 41.40 0.25 2.24 16 7 C 0.16 4.58 3.03 29.94 0.09 4.67 16 8 H 0.07 1.97 6.95 -2.38 -0.02 1.95 16 9 C 0.10 3.38 5.89 86.35 0.51 3.89 16 10 N -0.62 -23.63 3.02 -822.52 -2.48 -26.12 16 11 C 0.62 29.93 7.06 86.32 0.61 30.54 16 12 O -0.60 -33.64 15.88 -4.53 -0.07 -33.71 16 13 C -0.47 -23.13 5.43 24.67 0.13 -22.99 16 14 S 0.03 1.30 20.28 -56.49 -1.15 0.15 16 15 C -0.20 -7.92 11.07 66.64 0.74 -7.18 16 16 C -0.13 -5.96 9.07 22.61 0.21 -5.75 16 17 C 0.12 6.16 5.71 -20.89 -0.12 6.04 16 18 C -0.43 -23.19 8.61 23.34 0.20 -22.99 16 19 H 0.06 3.57 7.34 -2.91 -0.02 3.55 16 20 C 0.04 1.98 5.36 85.37 0.46 2.44 16 21 N -0.80 -37.88 10.78 21.89 0.24 -37.64 16 22 Si 0.98 36.64 29.59 68.60 2.03 38.67 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.25 -8.31 7.11 99.48 0.71 -7.60 16 25 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 26 C 0.06 1.85 6.05 86.35 0.52 2.38 16 27 C 0.06 1.36 6.98 72.08 0.50 1.86 16 28 O -0.37 -9.78 10.07 -148.98 -1.50 -11.28 16 29 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 1.84 6.98 -2.39 -0.02 1.83 16 32 H 0.22 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 35 H 0.08 2.86 7.11 -2.39 -0.02 2.84 16 36 H 0.18 5.48 8.06 -2.91 -0.02 5.45 16 37 H 0.14 6.61 6.27 -2.91 -0.02 6.59 16 38 H 0.30 12.54 8.29 -92.71 -0.77 11.77 16 39 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.11 3.58 4.40 -12.21 -0.05 3.53 16 41 H 0.15 2.47 8.14 -2.38 -0.02 2.45 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -68.76 361.81 2.73 -66.03 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 1.02 Total: 30.06 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 6.79 Total: -5.27 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -4.39 Total: -84.66 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.57 Total: -44.99 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.15 Total: 0.15 kcal Total: -68.76 2.73 -66.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887584651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.938 kcal (2) G-P(sol) polarization free energy of solvation -68.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds