Wall clock time and date at job start Wed Apr 1 2020 04:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34876 * 116.99538 * 2 1 4 4 O 1.21615 * 120.00454 * 359.97438 * 3 2 1 5 5 C 1.46501 * 119.99790 * 180.02562 * 3 2 1 6 6 C 1.36759 * 126.17837 * 0.02562 * 5 3 2 7 7 N 1.30914 * 113.93253 * 180.02562 * 6 5 3 8 8 C 1.29393 * 117.46761 * 359.97438 * 7 6 5 9 9 C 1.50706 * 124.70440 * 180.02562 * 8 7 6 10 10 N 1.46899 * 109.46754 * 89.97687 * 9 8 7 11 11 C 1.46899 * 111.00373 * 66.04527 * 10 9 8 12 12 C 1.50702 * 109.46956 * 62.92693 * 11 10 9 13 13 H 1.08002 * 120.00223 * 4.95787 * 12 11 10 14 14 C 1.37882 * 120.00034 * 184.95820 * 12 11 10 15 15 N 1.31513 * 119.99474 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99994 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47064 * 60.00379 * 16 14 12 18 18 H 1.48503 * 109.47097 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47460 * 300.00083 * 16 14 12 20 20 C 1.46905 * 110.99680 * 189.99865 * 10 9 8 21 21 C 1.50696 * 109.47195 * 163.95305 * 20 10 9 22 22 C 1.38680 * 120.41762 * 275.60969 * 21 20 10 23 23 C 1.38622 * 118.42309 * 179.78152 * 22 21 20 24 24 C 1.38228 * 119.15912 * 0.51918 * 23 22 21 25 25 N 1.31853 * 120.76425 * 359.71750 * 24 23 22 26 26 C 1.31889 * 121.72469 * 0.02562 * 25 24 23 27 27 S 1.70921 * 110.58890 * 359.97438 * 8 7 6 28 28 H 1.08996 * 109.46985 * 60.00408 * 1 2 3 29 29 H 1.08995 * 109.47087 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46772 * 300.00496 * 1 2 3 31 31 H 1.07995 * 123.03427 * 0.26409 * 6 5 3 32 32 H 1.08999 * 109.46568 * 209.97296 * 9 8 7 33 33 H 1.08995 * 109.47231 * 329.97576 * 9 8 7 34 34 H 1.08997 * 109.47323 * 182.92094 * 11 10 9 35 35 H 1.08999 * 109.47212 * 302.93249 * 11 10 9 36 36 H 0.97007 * 119.99540 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47133 * 283.95327 * 20 10 9 38 38 H 1.08995 * 109.47171 * 43.95059 * 20 10 9 39 39 H 1.08003 * 120.78826 * 0.02562 * 22 21 20 40 40 H 1.08004 * 120.42323 * 180.21561 * 23 22 21 41 41 H 1.08002 * 119.62041 * 179.75037 * 24 23 22 42 42 H 1.08004 * 119.61365 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4019 2.2218 -0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.3913 0.2184 -0.0016 7 7 5.6543 0.5628 -0.0014 8 6 5.9282 1.8274 -0.0007 9 6 7.3207 2.4037 -0.0010 10 7 7.7727 2.5913 -1.3860 11 6 6.9703 3.6158 -2.0676 12 6 7.1581 4.9422 -1.3774 13 1 7.8686 5.0347 -0.5693 14 6 6.4227 6.0378 -1.7776 15 7 5.5571 5.9249 -2.7612 16 14 6.6549 7.6817 -0.9216 17 1 8.0651 8.1225 -1.0705 18 1 5.7532 8.6904 -1.5339 19 1 6.3304 7.5392 0.5205 20 6 9.2025 2.9254 -1.4324 21 6 9.7199 2.7252 -2.8336 22 6 10.1268 1.4696 -3.2591 23 6 10.5914 1.3315 -4.5578 24 6 10.6437 2.4443 -5.3763 25 7 10.2530 3.6242 -4.9361 26 6 9.8008 3.7915 -3.7086 27 16 4.4916 2.7535 -0.0011 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0614 -0.8099 -0.0063 32 1 7.3161 3.3649 0.5130 33 1 7.9969 1.7203 0.5125 34 1 7.2918 3.6978 -3.1059 35 1 5.9178 3.3346 -2.0341 36 1 5.0395 6.6956 -3.0425 37 1 9.3423 3.9657 -1.1387 38 1 9.7494 2.2778 -0.7472 39 1 10.0789 0.6187 -2.5957 40 1 10.9132 0.3678 -4.9240 41 1 11.0083 2.3460 -6.3881 42 1 9.4901 4.7735 -3.3835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893878690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:56 Heat of formation + Delta-G solvation = 9.224837 kcal Electronic energy + Delta-G solvation = -27458.702787 eV Core-core repulsion = 23531.342708 eV Total energy + Delta-G solvation = -3927.360079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.29356 -39.79760 -39.22125 -37.00579 -36.34377 -32.82876 -32.41527 -31.51406 -30.62494 -28.39066 -27.32442 -26.92499 -24.90955 -23.86583 -23.08364 -22.40994 -21.90176 -20.34428 -19.48660 -17.93947 -17.23420 -16.73465 -16.48032 -16.38016 -16.32568 -15.89002 -15.31957 -14.98876 -14.69996 -14.38100 -14.06259 -13.82800 -13.52646 -13.45955 -13.21008 -12.93795 -12.63880 -12.59921 -12.46003 -12.28367 -11.64446 -11.42820 -11.12237 -11.09965 -10.99501 -10.92994 -10.85652 -10.70316 -10.52186 -10.17295 -9.87807 -9.40203 -9.29186 -9.14284 -9.00026 -8.63790 -8.57262 -8.44851 -7.46739 -6.16001 -4.28469 0.40137 1.39138 1.53401 1.71181 2.07942 2.45015 2.90568 3.19536 3.20938 3.27959 3.29564 4.17780 4.29315 4.38113 4.84774 4.90881 4.98490 5.00801 5.08780 5.14854 5.15983 5.29582 5.35090 5.36020 5.40192 5.45924 5.53105 5.80276 5.82591 5.94079 6.01439 6.23098 6.24575 6.35053 6.37312 6.47560 6.77156 6.93017 7.16759 7.34828 7.69141 7.72139 7.75900 7.90699 7.94152 8.07485 8.41684 8.80048 9.40340 10.88687 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.003756 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.067671 B = 7452.446685 C = 9309.762257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.353 6.353 3 C 0.552 3.448 4 O -0.507 6.507 5 C -0.344 4.344 6 C 0.125 3.875 7 N -0.483 5.483 8 C 0.075 3.925 9 C 0.128 3.872 10 N -0.530 5.530 11 C 0.175 3.825 12 C -0.566 4.566 13 H 0.060 0.940 14 C 0.077 3.923 15 N -0.876 5.876 16 Si 0.882 3.118 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.100 3.900 21 C -0.110 4.110 22 C -0.061 4.061 23 C -0.185 4.185 24 C 0.084 3.916 25 N -0.490 5.490 26 C 0.121 3.879 27 S 0.314 5.686 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.182 0.818 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 -11.733 4.729 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.395 3.605 4 O -0.396 6.396 5 C -0.468 4.468 6 C -0.039 4.039 7 N -0.198 5.198 8 C -0.197 4.197 9 C -0.003 4.003 10 N -0.254 5.254 11 C 0.049 3.951 12 C -0.605 4.605 13 H 0.078 0.922 14 C -0.129 4.129 15 N -0.513 5.513 16 Si 0.709 3.291 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.028 4.028 21 C -0.112 4.112 22 C -0.088 4.088 23 C -0.205 4.205 24 C -0.073 4.073 25 N -0.198 5.198 26 C -0.036 4.036 27 S 0.576 5.424 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.199 0.801 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.163 0.837 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.406 -10.240 3.806 10.932 hybrid contribution -0.600 0.032 1.143 1.291 sum -0.194 -10.208 4.949 11.346 Atomic orbital electron populations 1.23273 0.75969 1.03602 1.02729 1.86562 1.23421 1.32196 1.84789 1.19451 0.86813 0.81588 0.72599 1.90909 1.66529 1.35688 1.46480 1.25239 0.95539 1.00541 1.25442 1.22533 0.86141 0.99997 0.95245 1.66176 1.19472 1.16526 1.17578 1.27578 1.02055 0.91791 0.98266 1.20601 0.87374 0.99413 0.92923 1.62529 1.02425 1.48292 1.12204 1.20002 0.93302 0.86904 0.94853 1.21549 1.24085 0.95415 1.19445 0.92239 1.24886 0.94649 0.98690 0.94635 1.69917 1.23701 1.31014 1.26645 0.86815 0.78349 0.83955 0.79989 1.20019 1.21079 1.20091 1.20846 0.89002 1.01172 0.91768 1.20785 0.98536 0.93958 0.97929 1.21430 0.94817 0.97021 0.95525 1.22020 1.03158 0.99997 0.95285 1.22645 0.96723 0.88393 0.99527 1.67722 1.10531 1.25553 1.16029 1.22937 0.92767 0.99809 0.88080 1.85008 0.94679 1.03559 1.59186 0.91744 0.87986 0.91860 0.80108 0.90905 0.89228 0.94485 0.94589 0.92395 0.91549 0.91426 0.85271 0.85589 0.83652 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.35 -4.71 10.37 -40.97 -0.42 -5.13 16 3 C 0.55 9.11 7.92 34.06 0.27 9.38 16 4 O -0.51 -9.62 16.76 -19.35 -0.32 -9.95 16 5 C -0.34 -5.81 6.51 -36.79 -0.24 -6.05 16 6 C 0.12 1.92 11.20 -18.48 -0.21 1.71 16 7 N -0.48 -8.25 10.50 -11.26 -0.12 -8.36 16 8 C 0.08 1.34 6.17 -13.30 -0.08 1.25 16 9 C 0.13 2.17 5.35 -4.97 -0.03 2.14 16 10 N -0.53 -9.97 4.65 -238.97 -1.11 -11.08 16 11 C 0.17 3.99 4.67 -4.98 -0.02 3.97 16 12 C -0.57 -13.38 7.34 -34.44 -0.25 -13.63 16 13 H 0.06 1.35 5.95 -52.49 -0.31 1.04 16 14 C 0.08 1.94 5.46 -17.82 -0.10 1.84 16 15 N -0.88 -23.89 13.29 55.43 0.74 -23.15 16 16 Si 0.88 19.79 29.54 -169.99 -5.02 14.77 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 C 0.10 1.66 4.97 -4.98 -0.02 1.63 16 21 C -0.11 -1.84 4.91 -104.48 -0.51 -2.35 16 22 C -0.06 -0.90 9.88 -39.28 -0.39 -1.29 16 23 C -0.18 -2.49 10.11 -39.44 -0.40 -2.89 16 24 C 0.08 1.25 11.18 -17.55 -0.20 1.06 16 25 N -0.49 -8.85 10.36 -13.25 -0.14 -8.99 16 26 C 0.12 2.23 9.70 -17.55 -0.17 2.06 16 27 S 0.31 5.85 21.38 -107.50 -2.30 3.55 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.18 2.20 8.06 -52.49 -0.42 1.77 16 32 H 0.07 1.26 6.59 -51.93 -0.34 0.92 16 33 H 0.09 1.31 7.86 -51.93 -0.41 0.90 16 34 H 0.04 0.95 6.62 -51.93 -0.34 0.61 16 35 H 0.04 0.90 5.85 -51.93 -0.30 0.60 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.07 1.17 6.06 -51.93 -0.31 0.85 16 38 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 39 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 40 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 41 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.16 3.15 8.06 -52.48 -0.42 2.73 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -30.04 373.85 -9.29 -39.33 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.95 Total: 3.09 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.28 Total: 0.28 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.63 Total: -51.58 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.75 Total: -15.08 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 5.85 SS G_CDS: -2.30 Total: 3.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.04 -9.29 -39.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893878690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.558 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds