Wall clock time and date at job start Wed Apr 1 2020 04:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34876 * 116.99538 * 2 1 4 4 O 1.21615 * 120.00454 * 359.97438 * 3 2 1 5 5 C 1.46501 * 119.99790 * 180.02562 * 3 2 1 6 6 C 1.36759 * 126.17837 * 0.02562 * 5 3 2 7 7 N 1.30914 * 113.93253 * 180.02562 * 6 5 3 8 8 C 1.29393 * 117.46761 * 359.97438 * 7 6 5 9 9 C 1.50706 * 124.70440 * 180.02562 * 8 7 6 10 10 N 1.46899 * 109.46754 * 89.97687 * 9 8 7 11 11 C 1.46899 * 111.00373 * 66.04527 * 10 9 8 12 12 C 1.50702 * 109.46956 * 62.92693 * 11 10 9 13 13 H 1.08002 * 120.00223 * 4.95787 * 12 11 10 14 14 C 1.37882 * 120.00034 * 184.95820 * 12 11 10 15 15 N 1.31513 * 119.99474 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99994 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47064 * 60.00379 * 16 14 12 18 18 H 1.48503 * 109.47097 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47460 * 300.00083 * 16 14 12 20 20 C 1.46905 * 110.99680 * 189.99865 * 10 9 8 21 21 C 1.50696 * 109.47195 * 163.95305 * 20 10 9 22 22 C 1.38680 * 120.41762 * 275.60969 * 21 20 10 23 23 C 1.38622 * 118.42309 * 179.78152 * 22 21 20 24 24 C 1.38228 * 119.15912 * 0.51918 * 23 22 21 25 25 N 1.31853 * 120.76425 * 359.71750 * 24 23 22 26 26 C 1.31889 * 121.72469 * 0.02562 * 25 24 23 27 27 S 1.70921 * 110.58890 * 359.97438 * 8 7 6 28 28 H 1.08996 * 109.46985 * 60.00408 * 1 2 3 29 29 H 1.08995 * 109.47087 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46772 * 300.00496 * 1 2 3 31 31 H 1.07995 * 123.03427 * 0.26409 * 6 5 3 32 32 H 1.08999 * 109.46568 * 209.97296 * 9 8 7 33 33 H 1.08995 * 109.47231 * 329.97576 * 9 8 7 34 34 H 1.08997 * 109.47323 * 182.92094 * 11 10 9 35 35 H 1.08999 * 109.47212 * 302.93249 * 11 10 9 36 36 H 0.97007 * 119.99540 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47133 * 283.95327 * 20 10 9 38 38 H 1.08995 * 109.47171 * 43.95059 * 20 10 9 39 39 H 1.08003 * 120.78826 * 0.02562 * 22 21 20 40 40 H 1.08004 * 120.42323 * 180.21561 * 23 22 21 41 41 H 1.08002 * 119.62041 * 179.75037 * 24 23 22 42 42 H 1.08004 * 119.61365 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4019 2.2218 -0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.3913 0.2184 -0.0016 7 7 5.6543 0.5628 -0.0014 8 6 5.9282 1.8274 -0.0007 9 6 7.3207 2.4037 -0.0010 10 7 7.7727 2.5913 -1.3860 11 6 6.9703 3.6158 -2.0676 12 6 7.1581 4.9422 -1.3774 13 1 7.8686 5.0347 -0.5693 14 6 6.4227 6.0378 -1.7776 15 7 5.5571 5.9249 -2.7612 16 14 6.6549 7.6817 -0.9216 17 1 8.0651 8.1225 -1.0705 18 1 5.7532 8.6904 -1.5339 19 1 6.3304 7.5392 0.5205 20 6 9.2025 2.9254 -1.4324 21 6 9.7199 2.7252 -2.8336 22 6 10.1268 1.4696 -3.2591 23 6 10.5914 1.3315 -4.5578 24 6 10.6437 2.4443 -5.3763 25 7 10.2530 3.6242 -4.9361 26 6 9.8008 3.7915 -3.7086 27 16 4.4916 2.7535 -0.0011 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0614 -0.8099 -0.0063 32 1 7.3161 3.3649 0.5130 33 1 7.9969 1.7203 0.5125 34 1 7.2918 3.6978 -3.1059 35 1 5.9178 3.3346 -2.0341 36 1 5.0395 6.6956 -3.0425 37 1 9.3423 3.9657 -1.1387 38 1 9.7494 2.2778 -0.7472 39 1 10.0789 0.6187 -2.5957 40 1 10.9132 0.3678 -4.9240 41 1 11.0083 2.3460 -6.3881 42 1 9.4901 4.7735 -3.3835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893878690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:55 Heat of formation + Delta-G solvation = -10.264210 kcal Electronic energy + Delta-G solvation = -27459.547896 eV Core-core repulsion = 23531.342708 eV Total energy + Delta-G solvation = -3928.205188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.52258 -41.05009 -40.52540 -38.48931 -37.54593 -34.64147 -33.77857 -32.74230 -31.93043 -29.76166 -28.85890 -28.00092 -26.36977 -25.43433 -24.31596 -23.73348 -23.19392 -21.75110 -20.82463 -19.32220 -18.67020 -18.20860 -17.77591 -17.56992 -17.53177 -17.21414 -16.73383 -16.65323 -16.02673 -15.75861 -15.44524 -15.08095 -14.83279 -14.72885 -14.45057 -14.22952 -14.16481 -13.92572 -13.77118 -13.26819 -13.12763 -12.89265 -12.83808 -12.54546 -12.52715 -12.36809 -12.15485 -12.01895 -11.94469 -11.88245 -11.71041 -10.71575 -10.60790 -10.58842 -10.43297 -10.24091 -9.97358 -9.77629 -9.06254 -8.10337 -6.27754 -0.93191 0.05662 0.31968 0.51970 0.73005 1.14094 1.40210 1.42250 1.47360 1.77332 1.90444 2.40425 2.91231 3.09430 3.18542 3.52000 3.70182 3.74022 3.97510 4.04238 4.11387 4.19502 4.27842 4.29790 4.30647 4.32144 4.54171 4.64136 4.66519 4.69311 4.76344 5.02365 5.03292 5.06000 5.13483 5.22483 5.33189 5.42365 5.53880 5.79373 5.94568 6.00584 6.20169 6.36299 6.48629 6.59248 6.90517 7.18215 7.44001 8.92234 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.003756 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.067671 B = 7452.446685 C = 9309.762257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.345 6.345 3 C 0.554 3.446 4 O -0.541 6.541 5 C -0.347 4.347 6 C 0.139 3.861 7 N -0.483 5.483 8 C 0.083 3.917 9 C 0.127 3.873 10 N -0.530 5.530 11 C 0.194 3.806 12 C -0.549 4.549 13 H 0.069 0.931 14 C 0.029 3.971 15 N -0.917 5.917 16 Si 0.933 3.067 17 H -0.269 1.269 18 H -0.294 1.294 19 H -0.266 1.266 20 C 0.103 3.897 21 C -0.121 4.121 22 C -0.061 4.061 23 C -0.171 4.171 24 C 0.075 3.925 25 N -0.522 5.522 26 C 0.094 3.906 27 S 0.243 5.757 28 H 0.059 0.941 29 H 0.144 0.856 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.002 0.998 35 H 0.014 0.986 36 H 0.261 0.739 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.156 0.844 40 H 0.168 0.832 41 H 0.176 0.824 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 -15.047 5.605 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.261 6.261 3 C 0.400 3.600 4 O -0.433 6.433 5 C -0.469 4.469 6 C -0.024 4.024 7 N -0.198 5.198 8 C -0.190 4.190 9 C -0.003 4.003 10 N -0.254 5.254 11 C 0.067 3.933 12 C -0.588 4.588 13 H 0.087 0.913 14 C -0.172 4.172 15 N -0.556 5.556 16 Si 0.759 3.241 17 H -0.194 1.194 18 H -0.220 1.220 19 H -0.191 1.191 20 C -0.025 4.025 21 C -0.124 4.124 22 C -0.088 4.088 23 C -0.190 4.190 24 C -0.082 4.082 25 N -0.232 5.232 26 C -0.062 4.062 27 S 0.504 5.496 28 H 0.078 0.922 29 H 0.162 0.838 30 H 0.084 0.916 31 H 0.236 0.764 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.021 0.979 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.174 0.826 40 H 0.186 0.814 41 H 0.193 0.807 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.590 -13.586 4.712 14.468 hybrid contribution -0.950 0.868 0.822 1.527 sum 0.639 -12.719 5.535 13.885 Atomic orbital electron populations 1.23679 0.73682 1.06319 1.02702 1.86551 1.25538 1.30088 1.83954 1.19447 0.86653 0.82063 0.71886 1.90894 1.67146 1.37008 1.48230 1.25223 0.96035 0.99522 1.26159 1.23086 0.85180 1.01143 0.92958 1.66246 1.20150 1.15784 1.17637 1.27704 1.01609 0.91782 0.97878 1.20725 0.87705 1.00028 0.91859 1.62428 1.03264 1.46473 1.13224 1.19560 0.92557 0.87696 0.93439 1.21797 1.22732 0.95626 1.18617 0.91337 1.25552 0.94736 1.01694 0.95230 1.70052 1.25368 1.31452 1.28712 0.85982 0.78176 0.80541 0.79369 1.19374 1.21970 1.19118 1.20905 0.87747 1.01103 0.92710 1.20810 0.99245 0.94581 0.97739 1.21778 0.93822 0.96608 0.96564 1.22458 1.01002 1.01179 0.94377 1.23250 0.95984 0.87854 1.01133 1.67635 1.11680 1.27813 1.16033 1.22618 0.94923 0.99438 0.89219 1.85258 0.97048 1.06363 1.60933 0.92167 0.83833 0.91625 0.76353 0.91506 0.85789 0.97949 0.96799 0.93021 0.93231 0.87733 0.82591 0.81422 0.80651 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.70 16 2 O -0.35 -8.55 10.37 -57.90 -0.60 -9.15 16 3 C 0.55 18.07 7.92 69.98 0.55 18.62 16 4 O -0.54 -20.92 16.76 19.46 0.33 -20.60 16 5 C -0.35 -11.52 6.51 24.08 0.16 -11.36 16 6 C 0.14 3.97 11.20 84.48 0.95 4.92 16 7 N -0.48 -15.48 10.50 -189.53 -1.99 -17.47 16 8 C 0.08 2.88 6.17 88.47 0.55 3.42 16 9 C 0.13 4.14 5.35 85.56 0.46 4.60 16 10 N -0.53 -19.57 4.65 -909.95 -4.23 -23.80 16 11 C 0.19 9.15 4.67 85.56 0.40 9.55 16 12 C -0.55 -26.69 7.34 25.60 0.19 -26.51 16 13 H 0.07 3.15 5.95 -2.91 -0.02 3.14 16 14 C 0.03 1.51 5.46 84.66 0.46 1.97 16 15 N -0.92 -52.51 13.29 21.45 0.28 -52.22 16 16 Si 0.93 41.73 29.54 68.60 2.03 43.76 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 18 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 C 0.10 3.29 4.97 85.55 0.43 3.72 16 21 C -0.12 -3.99 4.91 -19.78 -0.10 -4.09 16 22 C -0.06 -1.62 9.88 22.47 0.22 -1.40 16 23 C -0.17 -4.02 10.11 22.36 0.23 -3.79 16 24 C 0.07 2.09 11.18 84.69 0.95 3.04 16 25 N -0.52 -19.15 10.36 -195.84 -2.03 -21.18 16 26 C 0.09 3.61 9.70 84.67 0.82 4.44 16 27 S 0.24 9.30 21.38 -56.49 -1.21 8.10 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.22 4.46 8.06 -2.91 -0.02 4.43 16 32 H 0.07 2.27 6.59 -2.39 -0.02 2.26 16 33 H 0.12 3.19 7.86 -2.39 -0.02 3.17 16 34 H 0.00 0.13 6.62 -2.39 -0.02 0.11 16 35 H 0.01 0.73 5.85 -2.39 -0.01 0.71 16 36 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 37 H 0.05 1.75 6.06 -2.39 -0.01 1.73 16 38 H 0.10 2.55 7.79 -2.39 -0.02 2.53 16 39 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 40 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 41 H 0.18 3.65 8.06 -2.91 -0.02 3.62 16 42 H 0.13 5.58 8.06 -2.91 -0.02 5.56 16 Total: -1.00 -69.00 373.85 1.09 -67.90 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.06 Total: 15.84 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 7.45 Total: 8.82 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -7.96 Total: -114.67 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.27 Total: -29.75 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 9.30 SS G_CDS: -1.21 Total: 8.10 kcal Total: -69.00 1.09 -67.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893878690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.641 kcal (2) G-P(sol) polarization free energy of solvation -69.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds