Wall clock time and date at job start Wed Apr 1 2020 04:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34220 * 117.00194 * 2 1 4 4 O 1.20834 * 120.00111 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00438 * 179.97438 * 3 2 1 6 6 O 1.42894 * 109.47583 * 179.97438 * 5 3 2 7 7 C 1.35900 * 117.00370 * 179.97438 * 6 5 3 8 8 C 1.38759 * 120.05239 * 0.02562 * 7 6 5 9 9 C 1.38119 * 119.94381 * 180.02562 * 8 7 6 10 10 C 1.38295 * 120.05704 * 359.97438 * 9 8 7 11 11 C 1.38240 * 120.10794 * 0.02562 * 10 9 8 12 12 C 1.38171 * 120.06065 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.03158 * 180.02562 * 12 11 10 14 14 N 1.46894 * 109.47332 * 259.95871 * 13 12 11 15 15 C 1.46907 * 111.00000 * 180.02562 * 14 13 12 16 16 H 1.08996 * 109.46656 * 324.99752 * 15 14 13 17 17 C 1.50699 * 109.46889 * 204.99916 * 15 14 13 18 18 H 1.07997 * 120.00056 * 359.97438 * 17 15 14 19 19 C 1.37879 * 119.99839 * 180.02562 * 17 15 14 20 20 N 1.31515 * 119.99748 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00005 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47296 * 89.99834 * 21 19 17 23 23 H 1.48501 * 109.46864 * 209.99747 * 21 19 17 24 24 H 1.48499 * 109.46810 * 329.99607 * 21 19 17 25 25 C 1.52995 * 109.47102 * 84.99888 * 15 14 13 26 26 F 1.39895 * 109.47470 * 59.99814 * 25 15 14 27 27 F 1.39904 * 109.47217 * 180.02562 * 25 15 14 28 28 F 1.39908 * 109.47214 * 299.99628 * 25 15 14 29 29 H 1.09003 * 109.46978 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47135 * 299.99765 * 1 2 3 31 31 H 1.08996 * 109.47083 * 59.99945 * 1 2 3 32 32 H 1.09001 * 109.47049 * 59.99478 * 5 3 2 33 33 H 1.08998 * 109.46949 * 300.00222 * 5 3 2 34 34 H 1.08001 * 120.03003 * 0.02562 * 8 7 6 35 35 H 1.07997 * 119.97310 * 179.97438 * 9 8 7 36 36 H 1.07995 * 119.94657 * 179.74935 * 10 9 8 37 37 H 1.08005 * 119.96924 * 179.97438 * 11 10 9 38 38 H 1.09006 * 109.46890 * 19.95921 * 13 12 11 39 39 H 1.09005 * 109.46894 * 139.95221 * 13 12 11 40 40 H 1.00899 * 111.00377 * 56.04337 * 14 13 12 41 41 H 0.97000 * 119.99807 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 8 3.9715 2.6451 -0.0001 7 6 5.3077 2.8935 0.0008 8 6 6.2103 1.8396 0.0019 9 6 7.5678 2.0946 0.0034 10 6 8.0276 3.3989 0.0033 11 6 7.1302 4.4505 0.0022 12 6 5.7713 4.2008 0.0018 13 6 4.7937 5.3476 0.0001 14 7 4.2916 5.5651 1.3633 15 6 3.3332 6.6779 1.4000 16 1 3.6352 7.4412 0.6830 17 6 3.3063 7.2721 2.7847 18 1 3.9375 6.8636 3.5600 19 6 2.4749 8.3365 3.0621 20 7 1.7058 8.8335 2.1181 21 14 2.4420 9.0734 4.7783 22 1 3.4515 10.1585 4.8705 23 1 1.0922 9.6285 5.0528 24 1 2.7559 8.0190 5.7758 25 6 1.9388 6.1622 1.0391 26 9 1.5512 5.1825 1.9594 27 9 1.0262 7.2221 1.0735 28 9 1.9638 5.6107 -0.2464 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.9564 0.7805 -0.8891 33 1 3.9557 0.7809 0.8908 34 1 5.8518 0.8209 0.0015 35 1 8.2708 1.2748 0.0046 36 1 9.0893 3.5963 0.0085 37 1 7.4918 5.4683 0.0026 38 1 5.2934 6.2504 -0.3515 39 1 3.9596 5.1130 -0.6614 40 1 5.0518 5.7207 2.0082 41 1 1.1212 9.5826 2.3131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896696769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:32 Heat of formation + Delta-G solvation = -217.878394 kcal Electronic energy + Delta-G solvation = -32151.227990 eV Core-core repulsion = 27197.117614 eV Total energy + Delta-G solvation = -4954.110377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.01820 -45.66166 -45.30922 -40.66525 -39.89125 -37.51179 -36.28625 -35.64239 -32.95430 -31.23870 -30.39831 -29.26738 -27.67212 -26.96330 -24.41946 -24.21537 -22.59704 -21.29415 -20.81789 -20.55301 -18.32782 -17.31412 -17.16453 -16.93052 -16.77367 -16.51106 -16.34108 -15.69302 -15.50891 -15.44389 -15.04989 -14.70425 -14.35782 -13.90303 -13.65992 -13.54679 -13.18690 -12.86132 -12.79039 -12.62897 -12.52811 -12.32146 -12.15101 -12.10118 -11.98607 -11.92436 -11.58585 -11.57061 -11.11956 -11.06194 -10.96444 -10.85633 -10.78775 -10.58776 -10.40272 -10.31812 -9.93606 -9.26419 -8.80670 -8.55576 -8.05147 -7.47456 -6.07276 -4.27301 1.38466 1.52636 2.12250 2.19356 3.26348 3.33434 3.38042 3.59248 3.82326 4.31724 4.57135 4.75330 4.79292 4.85503 4.89484 4.90769 5.02050 5.07739 5.12156 5.12518 5.29439 5.39381 5.42762 5.51247 5.68313 5.88967 6.00805 6.09380 6.24056 6.26535 6.38784 6.41355 6.54270 6.62064 6.65397 6.85838 7.01847 7.43663 7.62619 7.75615 7.78478 8.00650 8.39596 8.76639 9.38210 10.84813 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009491 B = 0.004574 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.582415 B = 6120.271779 C = 8238.055711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.363 6.363 3 C 0.452 3.548 4 O -0.456 6.456 5 C 0.071 3.929 6 O -0.270 6.270 7 C 0.151 3.849 8 C -0.216 4.216 9 C -0.086 4.086 10 C -0.159 4.159 11 C -0.077 4.077 12 C -0.096 4.096 13 C 0.092 3.908 14 N -0.670 5.670 15 C 0.188 3.812 16 H 0.037 0.963 17 C -0.537 4.537 18 H 0.074 0.926 19 C 0.061 3.939 20 N -0.846 5.846 21 Si 0.909 3.091 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.442 3.558 26 F -0.198 7.198 27 F -0.147 7.147 28 F -0.224 7.224 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.032 0.968 39 H 0.092 0.908 40 H 0.344 0.656 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.179 -16.052 -5.953 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.281 6.281 3 C 0.291 3.709 4 O -0.339 6.339 5 C -0.006 4.006 6 O -0.182 6.182 7 C 0.105 3.895 8 C -0.235 4.235 9 C -0.104 4.104 10 C -0.177 4.177 11 C -0.095 4.095 12 C -0.098 4.098 13 C -0.036 4.036 14 N -0.301 5.301 15 C 0.078 3.922 16 H 0.055 0.945 17 C -0.574 4.574 18 H 0.092 0.908 19 C -0.146 4.146 20 N -0.480 5.480 21 Si 0.736 3.264 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 C 0.387 3.613 26 F -0.179 7.179 27 F -0.128 7.128 28 F -0.206 7.206 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.050 0.950 39 H 0.110 0.890 40 H 0.164 0.836 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.068 -15.911 -6.054 18.072 hybrid contribution 0.100 0.804 0.716 1.081 sum 6.168 -15.107 -5.338 17.168 Atomic orbital electron populations 1.23286 0.75590 1.03561 1.03104 1.86398 1.23866 1.32800 1.85015 1.22980 0.91068 0.82061 0.74769 1.90869 1.66190 1.35658 1.41148 1.21776 0.89211 0.84874 1.04742 1.86307 1.20401 1.23252 1.88259 1.18764 0.81500 0.93557 0.95667 1.21192 0.94166 0.97993 1.10166 1.20836 0.94502 0.96816 0.98286 1.20987 0.99485 0.92593 1.04641 1.20972 0.91457 0.99514 0.97574 1.19357 0.94150 0.92377 1.03872 1.21018 0.96357 0.92911 0.93359 1.60192 1.19091 1.45653 1.05208 1.20053 0.85080 0.87300 0.99797 0.94548 1.20890 1.26676 1.15393 0.94476 0.90815 1.25105 0.94517 0.96784 0.98219 1.70422 1.22763 1.22497 1.32310 0.86311 0.77430 0.79188 0.83465 1.20444 1.20982 1.19589 1.22336 0.92063 0.75031 0.71890 1.92996 1.92732 1.64866 1.67351 1.93376 1.69930 1.53907 1.95581 1.92970 1.97045 1.87383 1.43222 0.87996 0.91508 0.91725 0.88209 0.87931 0.85646 0.86111 0.86137 0.85383 0.94983 0.89018 0.83645 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.36 -4.35 10.56 -39.23 -0.41 -4.76 16 3 C 0.45 6.72 8.03 36.01 0.29 7.01 16 4 O -0.46 -9.15 16.25 -25.48 -0.41 -9.56 16 5 C 0.07 0.87 5.33 36.01 0.19 1.06 16 6 O -0.27 -4.60 8.90 -39.38 -0.35 -4.95 16 7 C 0.15 2.31 6.66 -39.22 -0.26 2.05 16 8 C -0.22 -2.56 9.04 -39.43 -0.36 -2.91 16 9 C -0.09 -0.92 10.04 -39.60 -0.40 -1.32 16 10 C -0.16 -1.78 10.04 -39.56 -0.40 -2.18 16 11 C -0.08 -1.01 9.66 -39.61 -0.38 -1.40 16 12 C -0.10 -1.55 5.41 -104.47 -0.56 -2.12 16 13 C 0.09 1.77 5.18 -4.98 -0.03 1.75 16 14 N -0.67 -14.76 6.21 -109.22 -0.68 -15.44 16 15 C 0.19 4.86 2.26 -68.86 -0.16 4.70 16 16 H 0.04 0.99 7.80 -51.93 -0.41 0.59 16 17 C -0.54 -14.61 8.33 -34.44 -0.29 -14.90 16 18 H 0.07 1.96 7.62 -52.49 -0.40 1.56 16 19 C 0.06 1.68 5.20 -17.82 -0.09 1.58 16 20 N -0.85 -24.22 9.50 55.43 0.53 -23.69 16 21 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.44 12.16 2.81 37.15 0.10 12.27 16 26 F -0.20 -5.64 16.94 2.25 0.04 -5.60 16 27 F -0.15 -4.31 12.91 2.25 0.03 -4.28 16 28 F -0.22 -5.91 15.04 2.25 0.03 -5.88 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.10 0.88 7.66 -51.93 -0.40 0.49 16 33 H 0.10 1.01 7.66 -51.93 -0.40 0.61 16 34 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.51 8.04 -52.48 -0.42 1.09 16 38 H 0.03 0.58 7.92 -51.93 -0.41 0.17 16 39 H 0.09 1.96 5.74 -51.93 -0.30 1.67 16 40 H 0.34 7.16 8.22 -39.29 -0.32 6.84 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -34.30 361.51 -6.70 -41.00 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.63 Total: 4.44 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.27 Total: 7.04 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: -0.15 Total: -39.13 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -1.18 Total: -19.27 kcal Atomic # 9 Polarization: -15.85 SS G_CDS: 0.10 Total: -15.75 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.30 -6.70 -41.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896696769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.877 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds