Wall clock time and date at job start Wed Apr 1 2020 04:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34220 * 117.00194 * 2 1 4 4 O 1.20834 * 120.00111 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00438 * 179.97438 * 3 2 1 6 6 O 1.42894 * 109.47583 * 179.97438 * 5 3 2 7 7 C 1.35900 * 117.00370 * 179.97438 * 6 5 3 8 8 C 1.38759 * 120.05239 * 0.02562 * 7 6 5 9 9 C 1.38119 * 119.94381 * 180.02562 * 8 7 6 10 10 C 1.38295 * 120.05704 * 359.97438 * 9 8 7 11 11 C 1.38240 * 120.10794 * 0.02562 * 10 9 8 12 12 C 1.38171 * 120.06065 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.03158 * 180.02562 * 12 11 10 14 14 N 1.46894 * 109.47332 * 259.95871 * 13 12 11 15 15 C 1.46907 * 111.00000 * 180.02562 * 14 13 12 16 16 H 1.08996 * 109.46656 * 324.99752 * 15 14 13 17 17 C 1.50699 * 109.46889 * 204.99916 * 15 14 13 18 18 H 1.07997 * 120.00056 * 359.97438 * 17 15 14 19 19 C 1.37879 * 119.99839 * 180.02562 * 17 15 14 20 20 N 1.31515 * 119.99748 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00005 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47296 * 89.99834 * 21 19 17 23 23 H 1.48501 * 109.46864 * 209.99747 * 21 19 17 24 24 H 1.48499 * 109.46810 * 329.99607 * 21 19 17 25 25 C 1.52995 * 109.47102 * 84.99888 * 15 14 13 26 26 F 1.39895 * 109.47470 * 59.99814 * 25 15 14 27 27 F 1.39904 * 109.47217 * 180.02562 * 25 15 14 28 28 F 1.39908 * 109.47214 * 299.99628 * 25 15 14 29 29 H 1.09003 * 109.46978 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47135 * 299.99765 * 1 2 3 31 31 H 1.08996 * 109.47083 * 59.99945 * 1 2 3 32 32 H 1.09001 * 109.47049 * 59.99478 * 5 3 2 33 33 H 1.08998 * 109.46949 * 300.00222 * 5 3 2 34 34 H 1.08001 * 120.03003 * 0.02562 * 8 7 6 35 35 H 1.07997 * 119.97310 * 179.97438 * 9 8 7 36 36 H 1.07995 * 119.94657 * 179.74935 * 10 9 8 37 37 H 1.08005 * 119.96924 * 179.97438 * 11 10 9 38 38 H 1.09006 * 109.46890 * 19.95921 * 13 12 11 39 39 H 1.09005 * 109.46894 * 139.95221 * 13 12 11 40 40 H 1.00899 * 111.00377 * 56.04337 * 14 13 12 41 41 H 0.97000 * 119.99807 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 8 3.9715 2.6451 -0.0001 7 6 5.3077 2.8935 0.0008 8 6 6.2103 1.8396 0.0019 9 6 7.5678 2.0946 0.0034 10 6 8.0276 3.3989 0.0033 11 6 7.1302 4.4505 0.0022 12 6 5.7713 4.2008 0.0018 13 6 4.7937 5.3476 0.0001 14 7 4.2916 5.5651 1.3633 15 6 3.3332 6.6779 1.4000 16 1 3.6352 7.4412 0.6830 17 6 3.3063 7.2721 2.7847 18 1 3.9375 6.8636 3.5600 19 6 2.4749 8.3365 3.0621 20 7 1.7058 8.8335 2.1181 21 14 2.4420 9.0734 4.7783 22 1 3.4515 10.1585 4.8705 23 1 1.0922 9.6285 5.0528 24 1 2.7559 8.0190 5.7758 25 6 1.9388 6.1622 1.0391 26 9 1.5512 5.1825 1.9594 27 9 1.0262 7.2221 1.0735 28 9 1.9638 5.6107 -0.2464 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.9564 0.7805 -0.8891 33 1 3.9557 0.7809 0.8908 34 1 5.8518 0.8209 0.0015 35 1 8.2708 1.2748 0.0046 36 1 9.0893 3.5963 0.0085 37 1 7.4918 5.4683 0.0026 38 1 5.2934 6.2504 -0.3515 39 1 3.9596 5.1130 -0.6614 40 1 5.0518 5.7207 2.0082 41 1 1.1212 9.5826 2.3131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896696769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:31 Heat of formation + Delta-G solvation = -240.161662 kcal Electronic energy + Delta-G solvation = -32152.194265 eV Core-core repulsion = 27197.117614 eV Total energy + Delta-G solvation = -4955.076652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.25884 -47.89437 -47.59914 -41.75838 -40.94843 -38.57473 -37.48685 -37.31192 -34.81751 -32.66525 -31.36385 -30.36135 -29.29856 -27.86270 -26.49961 -25.77481 -23.60056 -22.72428 -22.32702 -21.87543 -19.49739 -19.07155 -18.72908 -18.53136 -18.37010 -17.97497 -17.86239 -17.38179 -16.81512 -16.55008 -16.48800 -16.39612 -15.60090 -15.33748 -15.07494 -14.87195 -14.73257 -14.56264 -14.38724 -14.31255 -14.21969 -14.12601 -13.90003 -13.85263 -13.69574 -13.41296 -13.01356 -12.94268 -12.85331 -12.59124 -12.53530 -12.23188 -12.06260 -12.02720 -11.88065 -11.70429 -11.42139 -11.33133 -10.64347 -9.79362 -9.27825 -9.05335 -8.17530 -6.44950 0.42382 0.56860 1.05792 1.16667 1.41542 1.44400 1.55485 2.35727 2.61930 2.64583 2.84661 2.98576 3.43362 3.61469 3.81924 3.90565 3.96619 3.98314 4.04849 4.09062 4.26717 4.28039 4.29110 4.38838 4.44865 4.51452 4.64649 4.66609 4.70067 4.88925 4.91568 5.16001 5.23088 5.45065 5.53476 5.57360 5.65881 5.72070 5.94012 6.11935 6.45443 6.55348 6.67553 6.74537 7.24915 8.75370 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009491 B = 0.004574 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.582415 B = 6120.271779 C = 8238.055711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.351 6.351 3 C 0.454 3.546 4 O -0.522 6.522 5 C 0.066 3.934 6 O -0.314 6.314 7 C 0.130 3.870 8 C -0.210 4.210 9 C -0.076 4.076 10 C -0.155 4.155 11 C -0.081 4.081 12 C -0.130 4.130 13 C 0.101 3.899 14 N -0.668 5.668 15 C 0.196 3.804 16 H 0.016 0.984 17 C -0.552 4.552 18 H 0.078 0.922 19 C 0.012 3.988 20 N -0.877 5.877 21 Si 0.977 3.023 22 H -0.264 1.264 23 H -0.284 1.284 24 H -0.267 1.267 25 C 0.438 3.562 26 F -0.206 7.206 27 F -0.160 7.160 28 F -0.221 7.221 29 H 0.145 0.855 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.134 0.866 38 H 0.034 0.966 39 H 0.061 0.939 40 H 0.350 0.650 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.796 -18.430 -5.192 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.268 6.268 3 C 0.296 3.704 4 O -0.410 6.410 5 C -0.009 4.009 6 O -0.228 6.228 7 C 0.084 3.916 8 C -0.229 4.229 9 C -0.094 4.094 10 C -0.173 4.173 11 C -0.100 4.100 12 C -0.131 4.131 13 C -0.028 4.028 14 N -0.301 5.301 15 C 0.085 3.915 16 H 0.034 0.966 17 C -0.589 4.589 18 H 0.096 0.904 19 C -0.193 4.193 20 N -0.512 5.512 21 Si 0.801 3.199 22 H -0.189 1.189 23 H -0.210 1.210 24 H -0.191 1.191 25 C 0.382 3.618 26 F -0.188 7.188 27 F -0.141 7.141 28 F -0.203 7.203 29 H 0.163 0.837 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.150 0.850 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.168 0.832 37 H 0.152 0.848 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.170 0.830 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.718 -18.334 -5.304 20.983 hybrid contribution -0.697 1.397 0.401 1.612 sum 8.021 -16.937 -4.903 19.371 Atomic orbital electron populations 1.23578 0.74428 1.06047 1.02216 1.86413 1.25011 1.31186 1.84145 1.23688 0.92262 0.81755 0.72667 1.90847 1.67727 1.37815 1.44564 1.22161 0.87261 0.83629 1.07878 1.86235 1.21754 1.25979 1.88837 1.19000 0.81483 0.94201 0.96867 1.21548 0.94172 0.98487 1.08665 1.21349 0.94631 0.97701 0.95705 1.21363 1.00584 0.92299 1.03076 1.21113 0.90589 1.00848 0.97446 1.19223 0.94550 0.91736 1.07618 1.20836 0.96226 0.94730 0.90991 1.60120 1.19088 1.43598 1.07266 1.19825 0.85058 0.87820 0.98840 0.96637 1.21182 1.26920 1.15729 0.95029 0.90413 1.25991 0.93962 0.97092 1.02214 1.70543 1.23359 1.22939 1.34333 0.85257 0.77576 0.78591 0.78467 1.18889 1.21008 1.19136 1.22678 0.92659 0.74572 0.71881 1.92964 1.92882 1.65205 1.67718 1.93345 1.70587 1.54509 1.95667 1.92976 1.97069 1.87310 1.42967 0.83708 0.92852 0.92315 0.84259 0.84979 0.82398 0.82237 0.83165 0.84774 0.94751 0.92075 0.82963 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.35 -8.05 10.56 -51.32 -0.54 -8.60 16 3 C 0.45 13.57 8.03 71.24 0.57 14.14 16 4 O -0.52 -22.07 16.25 28.37 0.46 -21.61 16 5 C 0.07 1.53 5.33 71.24 0.38 1.91 16 6 O -0.31 -10.80 8.90 -73.35 -0.65 -11.45 16 7 C 0.13 3.85 6.66 22.51 0.15 4.00 16 8 C -0.21 -4.21 9.04 22.37 0.20 -4.01 16 9 C -0.08 -1.26 10.04 22.25 0.22 -1.04 16 10 C -0.16 -2.91 10.04 22.28 0.22 -2.69 16 11 C -0.08 -2.04 9.66 22.25 0.22 -1.83 16 12 C -0.13 -4.19 5.41 -19.77 -0.11 -4.30 16 13 C 0.10 4.05 5.18 85.56 0.44 4.49 16 14 N -0.67 -30.57 6.21 -499.47 -3.10 -33.67 16 15 C 0.20 10.53 2.26 44.17 0.10 10.63 16 16 H 0.02 0.92 7.80 -2.39 -0.02 0.90 16 17 C -0.55 -30.58 8.33 25.60 0.21 -30.37 16 18 H 0.08 4.15 7.62 -2.91 -0.02 4.13 16 19 C 0.01 0.64 5.20 84.66 0.44 1.09 16 20 N -0.88 -51.44 9.50 21.45 0.20 -51.23 16 21 Si 0.98 43.70 29.54 68.60 2.03 45.73 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 C 0.44 25.17 2.81 71.98 0.20 25.38 16 26 F -0.21 -12.22 16.94 44.97 0.76 -11.46 16 27 F -0.16 -9.78 12.91 44.97 0.58 -9.20 16 28 F -0.22 -12.36 15.04 44.97 0.68 -11.68 16 29 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 31 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 32 H 0.14 2.04 7.66 -2.39 -0.02 2.03 16 33 H 0.13 2.22 7.66 -2.39 -0.02 2.20 16 34 H 0.16 2.02 6.30 -2.91 -0.02 2.00 16 35 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 36 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.13 3.05 8.04 -2.91 -0.02 3.03 16 38 H 0.03 1.32 7.92 -2.38 -0.02 1.30 16 39 H 0.06 2.81 5.74 -2.38 -0.01 2.79 16 40 H 0.35 14.95 8.22 -89.69 -0.74 14.21 16 41 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -78.87 361.51 5.22 -73.65 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.36 Total: 20.33 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 4.45 Total: 19.18 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -2.90 Total: -84.91 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.73 Total: -41.65 kcal Atomic # 9 Polarization: -34.36 SS G_CDS: 2.02 Total: -32.34 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -78.87 5.22 -73.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896696769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.511 kcal (2) G-P(sol) polarization free energy of solvation -78.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds