Wall clock time and date at job start Wed Apr 1 2020 04:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00124 * 2 1 4 4 O 1.20832 * 119.99476 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00164 * 180.02562 * 3 2 1 6 6 O 1.42901 * 109.47027 * 179.97438 * 5 3 2 7 7 C 1.35897 * 116.99854 * 179.97438 * 6 5 3 8 8 C 1.38751 * 120.05679 * 0.02562 * 7 6 5 9 9 C 1.38124 * 119.94703 * 180.02562 * 8 7 6 10 10 C 1.38287 * 120.05411 * 359.96999 * 9 8 7 11 11 C 1.38245 * 120.11339 * 0.02562 * 10 9 8 12 12 C 1.38172 * 120.05216 * 0.02562 * 11 10 9 13 13 C 1.50707 * 120.02551 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.46767 * 260.00230 * 13 12 11 15 15 C 1.46900 * 110.99819 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.46905 * 35.00037 * 15 14 13 17 17 C 1.50705 * 109.47152 * 154.99483 * 15 14 13 18 18 H 1.08000 * 119.99673 * 0.02562 * 17 15 14 19 19 C 1.37879 * 119.99753 * 179.97438 * 17 15 14 20 20 N 1.31510 * 120.00067 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99736 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47153 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47468 * 120.00037 * 21 19 17 24 24 H 1.48500 * 109.47102 * 240.00304 * 21 19 17 25 25 C 1.52996 * 109.47263 * 274.99872 * 15 14 13 26 26 F 1.39898 * 109.47104 * 59.99908 * 25 15 14 27 27 F 1.39898 * 109.47162 * 179.97438 * 25 15 14 28 28 F 1.39904 * 109.47096 * 300.00002 * 25 15 14 29 29 H 1.08998 * 109.47166 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47594 * 300.00552 * 1 2 3 31 31 H 1.09001 * 109.47113 * 60.00310 * 1 2 3 32 32 H 1.08993 * 109.47236 * 59.99535 * 5 3 2 33 33 H 1.08996 * 109.46656 * 299.99492 * 5 3 2 34 34 H 1.07998 * 120.02737 * 359.97438 * 8 7 6 35 35 H 1.07998 * 119.97524 * 180.02562 * 9 8 7 36 36 H 1.07997 * 119.94796 * 180.02562 * 10 9 8 37 37 H 1.08002 * 119.97517 * 179.74398 * 11 10 9 38 38 H 1.09003 * 109.47134 * 20.00040 * 13 12 11 39 39 H 1.08998 * 109.46757 * 140.00171 * 13 12 11 40 40 H 1.00898 * 110.99712 * 303.95369 * 14 13 12 41 41 H 0.97002 * 119.99479 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9714 2.6452 -0.0011 7 6 5.3075 2.8936 -0.0011 8 6 6.2102 1.8398 -0.0012 9 6 7.5677 2.0948 -0.0007 10 6 8.0274 3.3990 -0.0007 11 6 7.1301 4.4507 -0.0007 12 6 5.7712 4.2009 -0.0001 13 6 4.7935 5.3478 0.0005 14 7 4.2935 5.5642 1.3647 15 6 3.3353 6.6769 1.4038 16 1 2.7528 6.6873 0.4826 17 6 2.4105 6.5024 2.5809 18 1 2.5237 5.6503 3.2347 19 6 1.4208 7.4311 2.8236 20 7 1.2834 8.4689 2.0276 21 14 0.2750 7.2151 4.2830 22 1 0.6357 5.9752 5.0163 23 1 0.4041 8.3831 5.1909 24 1 -1.1263 7.1150 3.8016 25 6 4.0937 7.9985 1.5426 26 9 4.9521 8.1604 0.4499 27 9 3.1811 9.0582 1.5792 28 9 4.8414 7.9851 2.7250 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.9557 0.7809 -0.8907 33 1 3.9563 0.7807 0.8892 34 1 5.8517 0.8211 -0.0008 35 1 8.2707 1.2750 -0.0012 36 1 9.0892 3.5965 -0.0007 37 1 7.4916 5.4685 0.0035 38 1 5.2926 6.2508 -0.3511 39 1 3.9585 5.1136 -0.6598 40 1 3.8835 4.7210 1.7375 41 1 0.5868 9.1221 2.1982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896696770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:35 Heat of formation + Delta-G solvation = -220.428291 kcal Electronic energy + Delta-G solvation = -31561.942325 eV Core-core repulsion = 26607.721377 eV Total energy + Delta-G solvation = -4954.220948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.21049 -45.87364 -45.44644 -40.81660 -40.00161 -37.58312 -36.44305 -35.65020 -32.95412 -31.25366 -30.46983 -29.36142 -27.69807 -27.08125 -24.43998 -24.24568 -22.69699 -21.34018 -20.92209 -20.62169 -18.40447 -17.45642 -17.21326 -17.08252 -16.91323 -16.68003 -16.48387 -15.71353 -15.61648 -15.54041 -15.14771 -14.69294 -14.28147 -13.96687 -13.82297 -13.61369 -13.28775 -13.03280 -12.90493 -12.74216 -12.60666 -12.38191 -12.31476 -12.21036 -12.10626 -11.98606 -11.71470 -11.52938 -11.24738 -11.21097 -10.99449 -10.95063 -10.76682 -10.61682 -10.50751 -10.39047 -9.97205 -9.27408 -8.79566 -8.55249 -8.14586 -7.49678 -6.06925 -4.25635 1.39609 1.48105 1.97361 2.01841 3.27521 3.34421 3.39548 3.44826 3.81140 4.33310 4.43728 4.65397 4.66584 4.73674 4.84286 4.86516 4.91940 5.02068 5.08717 5.11209 5.26027 5.33402 5.40849 5.47901 5.69728 5.91186 6.00773 6.03295 6.12278 6.13932 6.33313 6.38650 6.48738 6.52219 6.68707 6.85168 7.02960 7.31332 7.58044 7.62396 7.79593 8.00148 8.39236 8.78201 9.39619 10.85699 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.008125 B = 0.004681 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.505779 B = 5980.217169 C = 8774.980324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.455 3.545 4 O -0.466 6.466 5 C 0.072 3.928 6 O -0.288 6.288 7 C 0.130 3.870 8 C -0.212 4.212 9 C -0.089 4.089 10 C -0.155 4.155 11 C -0.064 4.064 12 C -0.088 4.088 13 C 0.090 3.910 14 N -0.673 5.673 15 C 0.187 3.813 16 H 0.041 0.959 17 C -0.531 4.531 18 H 0.074 0.926 19 C 0.061 3.939 20 N -0.848 5.848 21 Si 0.909 3.091 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.439 3.561 26 F -0.231 7.231 27 F -0.142 7.142 28 F -0.200 7.200 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.350 0.650 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.468 -16.833 -6.157 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.278 6.278 3 C 0.295 3.705 4 O -0.349 6.349 5 C -0.005 4.005 6 O -0.201 6.201 7 C 0.085 3.915 8 C -0.230 4.230 9 C -0.107 4.107 10 C -0.173 4.173 11 C -0.082 4.082 12 C -0.090 4.090 13 C -0.038 4.038 14 N -0.305 5.305 15 C 0.077 3.923 16 H 0.058 0.942 17 C -0.568 4.568 18 H 0.092 0.908 19 C -0.146 4.146 20 N -0.482 5.482 21 Si 0.736 3.264 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.208 1.208 25 C 0.383 3.617 26 F -0.213 7.213 27 F -0.123 7.123 28 F -0.182 7.182 29 H 0.121 0.879 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.169 0.831 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.461 -15.771 -6.002 18.069 hybrid contribution -1.309 -0.381 0.374 1.414 sum 5.152 -16.152 -5.628 17.864 Atomic orbital electron populations 1.23320 0.75360 1.03757 1.03173 1.86407 1.24041 1.32598 1.84780 1.22995 0.91040 0.82067 0.74373 1.90833 1.66355 1.35857 1.41853 1.21787 0.89051 0.84520 1.05115 1.86154 1.20955 1.23953 1.89019 1.18833 0.81180 0.93872 0.97654 1.21136 0.94167 0.97816 1.09904 1.20841 0.94474 0.96865 0.98507 1.21055 0.99653 0.92572 1.04011 1.20978 0.91278 0.99703 0.96278 1.19371 0.94819 0.91616 1.03149 1.21022 0.95610 0.95243 0.91970 1.60362 1.41786 1.09978 1.18372 1.20062 0.87853 0.84113 1.00298 0.94180 1.20912 1.13606 1.10846 1.11482 0.90813 1.25089 0.97609 0.94542 0.97357 1.70406 1.30310 1.10733 1.36783 0.86251 0.80016 0.78341 0.81763 1.19513 1.20698 1.20829 1.22607 0.76789 0.90714 0.71562 1.92937 1.74328 1.96664 1.57381 1.93398 1.63495 1.59657 1.95727 1.92993 1.78455 1.97189 1.49560 0.87857 0.91408 0.91630 0.87908 0.87682 0.85671 0.86054 0.86004 0.85013 0.89617 0.94172 0.83052 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -3.87 10.57 -39.26 -0.41 -4.29 16 3 C 0.46 6.03 8.03 36.00 0.29 6.32 16 4 O -0.47 -8.41 16.25 -25.48 -0.41 -8.83 16 5 C 0.07 0.78 5.33 36.00 0.19 0.97 16 6 O -0.29 -4.41 8.86 -39.37 -0.35 -4.75 16 7 C 0.13 1.89 6.66 -39.22 -0.26 1.63 16 8 C -0.21 -2.40 9.04 -39.43 -0.36 -2.76 16 9 C -0.09 -0.94 10.04 -39.61 -0.40 -1.34 16 10 C -0.15 -1.79 10.04 -39.56 -0.40 -2.19 16 11 C -0.06 -0.90 9.67 -39.60 -0.38 -1.28 16 12 C -0.09 -1.43 5.41 -104.47 -0.56 -2.00 16 13 C 0.09 1.75 5.18 -4.97 -0.03 1.73 16 14 N -0.67 -15.05 6.21 -109.22 -0.68 -15.73 16 15 C 0.19 4.87 2.26 -68.86 -0.16 4.71 16 16 H 0.04 1.13 7.80 -51.93 -0.40 0.72 16 17 C -0.53 -14.75 8.33 -34.44 -0.29 -15.03 16 18 H 0.07 2.03 7.62 -52.49 -0.40 1.63 16 19 C 0.06 1.70 5.20 -17.82 -0.09 1.60 16 20 N -0.85 -24.39 9.50 55.43 0.53 -23.87 16 21 Si 0.91 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.44 11.56 2.81 37.16 0.10 11.67 16 26 F -0.23 -5.56 15.04 2.25 0.03 -5.53 16 27 F -0.14 -4.03 12.91 2.25 0.03 -4.00 16 28 F -0.20 -5.33 16.95 2.25 0.04 -5.29 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 32 H 0.10 0.79 7.66 -51.93 -0.40 0.39 16 33 H 0.11 0.87 7.66 -51.93 -0.40 0.48 16 34 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.13 1.78 8.04 -52.49 -0.42 1.35 16 38 H 0.09 1.68 5.89 -51.93 -0.31 1.37 16 39 H 0.04 0.82 7.77 -51.93 -0.40 0.42 16 40 H 0.35 7.85 8.17 -39.29 -0.32 7.53 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -33.38 361.42 -6.70 -40.08 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.63 Total: 4.72 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.27 Total: 5.42 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.15 Total: -39.60 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -1.18 Total: -17.87 kcal Atomic # 9 Polarization: -14.92 SS G_CDS: 0.10 Total: -14.82 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.38 -6.70 -40.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896696770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.347 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds