Wall clock time and date at job start Wed Apr 1 2020 04:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00124 * 2 1 4 4 O 1.20832 * 119.99476 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00164 * 180.02562 * 3 2 1 6 6 O 1.42901 * 109.47027 * 179.97438 * 5 3 2 7 7 C 1.35897 * 116.99854 * 179.97438 * 6 5 3 8 8 C 1.38751 * 120.05679 * 0.02562 * 7 6 5 9 9 C 1.38124 * 119.94703 * 180.02562 * 8 7 6 10 10 C 1.38287 * 120.05411 * 359.96999 * 9 8 7 11 11 C 1.38245 * 120.11339 * 0.02562 * 10 9 8 12 12 C 1.38172 * 120.05216 * 0.02562 * 11 10 9 13 13 C 1.50707 * 120.02551 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.46767 * 260.00230 * 13 12 11 15 15 C 1.46900 * 110.99819 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.46905 * 35.00037 * 15 14 13 17 17 C 1.50705 * 109.47152 * 154.99483 * 15 14 13 18 18 H 1.08000 * 119.99673 * 0.02562 * 17 15 14 19 19 C 1.37879 * 119.99753 * 179.97438 * 17 15 14 20 20 N 1.31510 * 120.00067 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99736 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47153 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47468 * 120.00037 * 21 19 17 24 24 H 1.48500 * 109.47102 * 240.00304 * 21 19 17 25 25 C 1.52996 * 109.47263 * 274.99872 * 15 14 13 26 26 F 1.39898 * 109.47104 * 59.99908 * 25 15 14 27 27 F 1.39898 * 109.47162 * 179.97438 * 25 15 14 28 28 F 1.39904 * 109.47096 * 300.00002 * 25 15 14 29 29 H 1.08998 * 109.47166 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47594 * 300.00552 * 1 2 3 31 31 H 1.09001 * 109.47113 * 60.00310 * 1 2 3 32 32 H 1.08993 * 109.47236 * 59.99535 * 5 3 2 33 33 H 1.08996 * 109.46656 * 299.99492 * 5 3 2 34 34 H 1.07998 * 120.02737 * 359.97438 * 8 7 6 35 35 H 1.07998 * 119.97524 * 180.02562 * 9 8 7 36 36 H 1.07997 * 119.94796 * 180.02562 * 10 9 8 37 37 H 1.08002 * 119.97517 * 179.74398 * 11 10 9 38 38 H 1.09003 * 109.47134 * 20.00040 * 13 12 11 39 39 H 1.08998 * 109.46757 * 140.00171 * 13 12 11 40 40 H 1.00898 * 110.99712 * 303.95369 * 14 13 12 41 41 H 0.97002 * 119.99479 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9714 2.6452 -0.0011 7 6 5.3075 2.8936 -0.0011 8 6 6.2102 1.8398 -0.0012 9 6 7.5677 2.0948 -0.0007 10 6 8.0274 3.3990 -0.0007 11 6 7.1301 4.4507 -0.0007 12 6 5.7712 4.2009 -0.0001 13 6 4.7935 5.3478 0.0005 14 7 4.2935 5.5642 1.3647 15 6 3.3353 6.6769 1.4038 16 1 2.7528 6.6873 0.4826 17 6 2.4105 6.5024 2.5809 18 1 2.5237 5.6503 3.2347 19 6 1.4208 7.4311 2.8236 20 7 1.2834 8.4689 2.0276 21 14 0.2750 7.2151 4.2830 22 1 0.6357 5.9752 5.0163 23 1 0.4041 8.3831 5.1909 24 1 -1.1263 7.1150 3.8016 25 6 4.0937 7.9985 1.5426 26 9 4.9521 8.1604 0.4499 27 9 3.1811 9.0582 1.5792 28 9 4.8414 7.9851 2.7250 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.9557 0.7809 -0.8907 33 1 3.9563 0.7807 0.8892 34 1 5.8517 0.8211 -0.0008 35 1 8.2707 1.2750 -0.0012 36 1 9.0892 3.5965 -0.0007 37 1 7.4916 5.4685 0.0035 38 1 5.2926 6.2508 -0.3511 39 1 3.9585 5.1136 -0.6598 40 1 3.8835 4.7210 1.7375 41 1 0.5868 9.1221 2.1982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896696770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:34 Heat of formation + Delta-G solvation = -241.722923 kcal Electronic energy + Delta-G solvation = -31562.865730 eV Core-core repulsion = 26607.721377 eV Total energy + Delta-G solvation = -4955.144353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.35931 -47.99604 -47.65829 -41.81815 -41.01047 -38.59542 -37.51660 -37.36986 -34.84507 -32.69447 -31.39813 -30.40197 -29.32759 -27.89002 -26.55668 -25.78549 -23.67022 -22.78969 -22.32606 -21.93134 -19.50310 -19.14024 -18.79738 -18.61768 -18.41592 -18.02143 -17.92389 -17.39272 -16.91480 -16.61253 -16.49684 -16.41508 -15.54818 -15.35430 -15.24202 -14.97280 -14.79508 -14.61895 -14.43399 -14.39907 -14.29721 -14.21485 -13.93712 -13.89700 -13.75799 -13.39163 -13.00977 -12.92348 -12.84284 -12.69017 -12.58540 -12.26280 -12.12015 -12.08807 -11.89759 -11.74358 -11.46563 -11.35338 -10.68040 -9.81917 -9.39497 -9.09208 -8.20466 -6.46860 0.41430 0.52312 1.01147 1.10882 1.38454 1.39578 1.52786 2.33331 2.52158 2.55338 2.81496 2.94303 3.38267 3.57313 3.78715 3.86646 3.93014 3.96886 4.02953 4.03274 4.20151 4.27959 4.29161 4.36754 4.42477 4.47574 4.60643 4.67575 4.71211 4.84819 4.91821 5.10476 5.20974 5.37996 5.51844 5.56054 5.67676 5.68299 5.89335 6.06084 6.37755 6.47504 6.61592 6.66359 7.22347 8.72778 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.008125 B = 0.004681 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.505779 B = 5980.217169 C = 8774.980324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.458 3.542 4 O -0.528 6.528 5 C 0.067 3.933 6 O -0.325 6.325 7 C 0.118 3.882 8 C -0.203 4.203 9 C -0.076 4.076 10 C -0.153 4.153 11 C -0.077 4.077 12 C -0.125 4.125 13 C 0.100 3.900 14 N -0.666 5.666 15 C 0.192 3.808 16 H 0.010 0.990 17 C -0.550 4.550 18 H 0.071 0.929 19 C 0.013 3.987 20 N -0.876 5.876 21 Si 0.974 3.026 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.275 1.275 25 C 0.439 3.561 26 F -0.219 7.219 27 F -0.154 7.154 28 F -0.201 7.201 29 H 0.144 0.856 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.126 0.874 38 H 0.075 0.925 39 H 0.018 0.982 40 H 0.348 0.652 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.039 -20.068 -5.601 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.301 3.699 4 O -0.416 6.416 5 C -0.008 4.008 6 O -0.240 6.240 7 C 0.073 3.927 8 C -0.221 4.221 9 C -0.094 4.094 10 C -0.171 4.171 11 C -0.096 4.096 12 C -0.126 4.126 13 C -0.029 4.029 14 N -0.298 5.298 15 C 0.081 3.919 16 H 0.027 0.973 17 C -0.587 4.587 18 H 0.089 0.911 19 C -0.191 4.191 20 N -0.511 5.511 21 Si 0.798 3.202 22 H -0.188 1.188 23 H -0.201 1.201 24 H -0.200 1.200 25 C 0.384 3.616 26 F -0.201 7.201 27 F -0.136 7.136 28 F -0.183 7.183 29 H 0.162 0.838 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.181 0.819 35 H 0.180 0.820 36 H 0.167 0.833 37 H 0.144 0.856 38 H 0.094 0.906 39 H 0.036 0.964 40 H 0.167 0.833 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.056 -19.047 -5.458 21.389 hybrid contribution -1.745 0.513 0.125 1.823 sum 6.311 -18.534 -5.333 20.292 Atomic orbital electron populations 1.23603 0.74262 1.06112 1.02385 1.86421 1.25131 1.31130 1.83966 1.23649 0.92159 0.81738 0.72393 1.90816 1.67822 1.37898 1.45082 1.22196 0.87208 0.83097 1.08319 1.86098 1.21732 1.26794 1.89338 1.18952 0.81483 0.94045 0.98183 1.21546 0.93986 0.98551 1.08055 1.21364 0.94865 0.97473 0.95735 1.21385 1.00547 0.92405 1.02788 1.21050 0.90909 1.00607 0.97013 1.19191 0.94886 0.91346 1.07152 1.20864 0.95641 0.96685 0.89684 1.60365 1.40003 1.08880 1.20502 1.19817 0.88244 0.85367 0.98474 0.97292 1.21156 1.14522 1.11051 1.11979 0.91052 1.25943 0.98982 0.94126 1.00066 1.70518 1.30962 1.11369 1.38229 0.85249 0.78007 0.78524 0.78388 1.18821 1.20084 1.20048 1.22524 0.76832 0.90460 0.71804 1.92952 1.73842 1.96620 1.56683 1.93367 1.64146 1.60240 1.95825 1.92979 1.78403 1.97178 1.49711 0.83837 0.92566 0.92202 0.84072 0.84498 0.81894 0.82008 0.83299 0.85601 0.90637 0.96350 0.83290 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.35 -7.01 10.57 -51.42 -0.54 -7.56 16 3 C 0.46 11.97 8.03 71.24 0.57 12.55 16 4 O -0.53 -20.02 16.25 28.38 0.46 -19.56 16 5 C 0.07 1.31 5.33 71.24 0.38 1.69 16 6 O -0.33 -9.95 8.86 -73.31 -0.65 -10.60 16 7 C 0.12 3.31 6.66 22.51 0.15 3.46 16 8 C -0.20 -3.80 9.04 22.37 0.20 -3.60 16 9 C -0.08 -1.26 10.04 22.25 0.22 -1.04 16 10 C -0.15 -3.08 10.04 22.28 0.22 -2.85 16 11 C -0.08 -2.13 9.67 22.26 0.22 -1.92 16 12 C -0.12 -4.10 5.41 -19.77 -0.11 -4.21 16 13 C 0.10 4.11 5.18 85.56 0.44 4.55 16 14 N -0.67 -31.21 6.21 -499.45 -3.10 -34.31 16 15 C 0.19 10.49 2.26 44.17 0.10 10.59 16 16 H 0.01 0.57 7.80 -2.39 -0.02 0.55 16 17 C -0.55 -31.49 8.33 25.60 0.21 -31.27 16 18 H 0.07 4.02 7.62 -2.91 -0.02 4.00 16 19 C 0.01 0.74 5.20 84.66 0.44 1.18 16 20 N -0.88 -51.69 9.50 21.45 0.20 -51.49 16 21 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 C 0.44 23.94 2.81 71.98 0.20 24.14 16 26 F -0.22 -10.91 15.04 44.97 0.68 -10.23 16 27 F -0.15 -9.08 12.91 44.97 0.58 -8.50 16 28 F -0.20 -10.90 16.95 44.97 0.76 -10.14 16 29 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 31 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 32 H 0.14 1.64 7.66 -2.39 -0.02 1.62 16 33 H 0.14 1.78 7.66 -2.39 -0.02 1.77 16 34 H 0.16 1.73 6.30 -2.91 -0.02 1.72 16 35 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.13 3.46 8.04 -2.91 -0.02 3.44 16 38 H 0.08 3.16 5.89 -2.39 -0.01 3.15 16 39 H 0.02 0.82 7.77 -2.39 -0.02 0.80 16 40 H 0.35 16.38 8.17 -89.70 -0.73 15.65 16 41 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -76.61 361.42 5.23 -71.38 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.36 Total: 19.18 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 4.45 Total: 14.95 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -2.90 Total: -85.80 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.73 Total: -37.71 kcal Atomic # 9 Polarization: -30.89 SS G_CDS: 2.02 Total: -28.87 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -76.61 5.23 -71.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896696770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.347 kcal (2) G-P(sol) polarization free energy of solvation -76.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds