Wall clock time and date at job start Wed Apr 1 2020 04:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99991 * 2 1 4 4 O 1.20831 * 119.99805 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00150 * 179.97438 * 3 2 1 6 6 O 1.42895 * 109.47078 * 179.97438 * 5 3 2 7 7 C 1.35902 * 116.99982 * 180.02562 * 6 5 3 8 8 C 1.38733 * 120.05796 * 180.02562 * 7 6 5 9 9 C 1.38146 * 119.94442 * 180.02562 * 8 7 6 10 10 C 1.38267 * 120.05445 * 0.02790 * 9 8 7 11 11 C 1.50703 * 119.93817 * 179.97438 * 10 9 8 12 12 N 1.46894 * 109.47305 * 89.99905 * 11 10 9 13 13 C 1.46904 * 111.00006 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47038 * 34.99283 * 13 12 11 15 15 C 1.50701 * 109.47195 * 155.00140 * 13 12 11 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 13 12 17 17 C 1.37871 * 119.99694 * 180.27796 * 15 13 12 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 C 1.53005 * 109.46661 * 274.99752 * 13 12 11 24 24 F 1.39897 * 109.47542 * 299.99791 * 23 13 12 25 25 F 1.39898 * 109.46978 * 60.00183 * 23 13 12 26 26 F 1.39909 * 109.46562 * 179.97438 * 23 13 12 27 27 C 1.38262 * 120.11242 * 0.24526 * 10 9 8 28 28 C 1.38146 * 120.05418 * 359.45708 * 27 10 9 29 29 H 1.09005 * 109.47230 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47418 * 299.99802 * 1 2 3 31 31 H 1.09006 * 109.47565 * 59.99839 * 1 2 3 32 32 H 1.09010 * 109.46625 * 60.00305 * 5 3 2 33 33 H 1.08992 * 109.47053 * 300.00296 * 5 3 2 34 34 H 1.08005 * 120.02836 * 0.02562 * 8 7 6 35 35 H 1.08002 * 119.96693 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47408 * 329.99298 * 11 10 9 37 37 H 1.09003 * 109.46652 * 209.99547 * 11 10 9 38 38 H 1.00895 * 111.00231 * 56.04192 * 12 11 10 39 39 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 40 40 H 1.08002 * 119.96991 * 179.71013 * 27 10 9 41 41 H 1.08003 * 120.02863 * 180.24889 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9714 2.6452 -0.0001 7 6 5.3075 2.8936 -0.0003 8 6 5.7712 4.2011 -0.0004 9 6 7.1299 4.4509 -0.0011 10 6 8.0274 3.3991 -0.0022 11 6 9.5090 3.6746 -0.0035 12 7 9.9917 3.7638 1.3810 13 6 11.4356 4.0316 1.4188 14 1 11.7066 4.6815 0.5867 15 6 11.7873 4.7072 2.7192 16 1 11.0153 4.9170 3.4448 17 6 13.0936 5.0630 2.9799 18 7 14.0336 4.8079 2.0962 19 14 13.5283 5.9075 4.5884 20 1 13.8645 4.8834 5.6100 21 1 14.6966 6.7999 4.3791 22 1 12.3694 6.7102 5.0551 23 6 12.2021 2.7122 1.3060 24 9 11.8545 1.8780 2.3739 25 9 11.8756 2.0851 0.0988 26 9 13.5773 2.9674 1.3414 27 6 7.5677 2.0951 -0.0078 28 6 6.2101 1.8400 -0.0009 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.9563 0.7806 -0.8893 33 1 3.9556 0.7810 0.8907 34 1 5.0706 5.0231 0.0000 35 1 7.4913 5.4687 -0.0016 36 1 9.7031 4.6160 -0.5174 37 1 10.0284 2.8660 -0.5180 38 1 9.7659 2.9269 1.8973 39 1 14.9525 5.0585 2.2795 40 1 8.2708 1.2753 -0.0134 41 1 5.8515 0.8212 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896698025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:41 Heat of formation + Delta-G solvation = -223.228273 kcal Electronic energy + Delta-G solvation = -29986.732039 eV Core-core repulsion = 25032.389674 eV Total energy + Delta-G solvation = -4954.342365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.54887 -46.22714 -45.69522 -41.04979 -40.07141 -37.99825 -36.80828 -35.53638 -32.86305 -31.29076 -30.78404 -29.83899 -27.78022 -27.13329 -24.53736 -24.02284 -23.04380 -21.59701 -20.97487 -20.83969 -18.74610 -17.67177 -17.40972 -17.33813 -17.23563 -16.80586 -16.77341 -16.22385 -15.82438 -15.59488 -15.06208 -14.76528 -14.30967 -14.14207 -13.94282 -13.71339 -13.49806 -13.27349 -13.17913 -12.94103 -12.66990 -12.61561 -12.48843 -12.47120 -12.35878 -12.11313 -11.91078 -11.78006 -11.38336 -11.29812 -11.10581 -11.00931 -10.93103 -10.73187 -10.69478 -10.51909 -10.07797 -9.55577 -8.94944 -8.57967 -8.17266 -7.64147 -6.13395 -4.30375 1.39383 1.42881 1.69246 1.72716 3.25537 3.25899 3.31992 3.36267 3.77625 4.19061 4.28434 4.37960 4.51427 4.54741 4.64399 4.73542 4.82183 4.85675 4.95693 4.98271 5.05927 5.25039 5.36493 5.48203 5.62021 5.68734 5.75232 5.82042 5.88647 6.07661 6.13289 6.20185 6.28251 6.37967 6.71078 6.73796 6.84669 7.19349 7.28173 7.53781 7.77533 8.04136 8.09301 8.76440 9.34976 10.79224 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.002042 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.362836 B =13711.344450 C =14167.059267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.463 3.537 4 O -0.483 6.483 5 C 0.070 3.930 6 O -0.298 6.298 7 C 0.116 3.884 8 C -0.145 4.145 9 C -0.057 4.057 10 C -0.099 4.099 11 C 0.083 3.917 12 N -0.664 5.664 13 C 0.191 3.809 14 H 0.073 0.927 15 C -0.514 4.514 16 H 0.079 0.921 17 C 0.056 3.944 18 N -0.853 5.853 19 Si 0.911 3.089 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.270 1.270 23 C 0.394 3.606 24 F -0.208 7.208 25 F -0.233 7.233 26 F -0.136 7.136 27 C -0.075 4.075 28 C -0.209 4.209 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.336 0.664 39 H 0.264 0.736 40 H 0.125 0.875 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.095 -8.972 -6.184 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.368 6.368 5 C -0.007 4.007 6 O -0.212 6.212 7 C 0.072 3.928 8 C -0.164 4.164 9 C -0.075 4.075 10 C -0.099 4.099 11 C -0.046 4.046 12 N -0.293 5.293 13 C 0.080 3.920 14 H 0.090 0.910 15 C -0.551 4.551 16 H 0.097 0.903 17 C -0.151 4.151 18 N -0.488 5.488 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.195 1.195 23 C 0.337 3.663 24 F -0.190 7.190 25 F -0.215 7.215 26 F -0.118 7.118 27 C -0.093 4.093 28 C -0.227 4.227 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.154 0.846 39 H 0.074 0.926 40 H 0.143 0.857 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.435 -7.854 -6.160 21.848 hybrid contribution 0.735 -1.049 0.531 1.387 sum -18.700 -8.904 -5.629 21.463 Atomic orbital electron populations 1.23344 0.75275 1.04068 1.02934 1.86446 1.24106 1.32420 1.84402 1.23054 0.91097 0.81909 0.73515 1.90732 1.66675 1.36181 1.43223 1.21813 0.88625 0.84655 1.05578 1.86050 1.21502 1.24044 1.89613 1.18904 0.80693 0.94489 0.98758 1.20412 0.95890 0.93854 1.06198 1.20938 0.91142 0.99653 0.95784 1.19913 0.96093 0.92779 1.01161 1.21146 0.89715 1.01720 0.91987 1.60724 1.15292 1.42605 1.10723 1.20477 0.81684 0.87755 1.02084 0.90982 1.20822 0.93822 1.38908 1.01594 0.90306 1.25158 0.96233 0.95664 0.98022 1.70364 1.01585 1.42466 1.34396 0.86267 0.78064 0.79258 0.82559 1.20490 1.21093 1.19453 1.24316 0.82380 0.88919 0.70697 1.92987 1.92381 1.75390 1.58252 1.92974 1.92895 1.86238 1.49386 1.93422 1.30253 1.92612 1.95465 1.20899 0.94511 0.96708 0.97210 1.21128 0.94013 0.97890 1.09689 0.87615 0.91561 0.91600 0.87573 0.87474 0.85188 0.84753 0.90244 0.93496 0.84575 0.92556 0.85750 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.82 10.57 -39.25 -0.41 -3.23 16 3 C 0.46 4.56 8.03 36.00 0.29 4.85 16 4 O -0.48 -6.47 16.25 -25.48 -0.41 -6.89 16 5 C 0.07 0.58 5.33 36.00 0.19 0.78 16 6 O -0.30 -3.62 9.67 -39.39 -0.38 -4.00 16 7 C 0.12 1.44 6.69 -39.22 -0.26 1.18 16 8 C -0.14 -1.87 9.99 -39.43 -0.39 -2.26 16 9 C -0.06 -0.77 9.69 -39.60 -0.38 -1.15 16 10 C -0.10 -1.44 5.39 -104.60 -0.56 -2.00 16 11 C 0.08 1.39 5.51 -4.98 -0.03 1.36 16 12 N -0.66 -13.25 6.22 -109.22 -0.68 -13.93 16 13 C 0.19 4.51 2.26 -68.86 -0.16 4.35 16 14 H 0.07 1.80 7.80 -51.93 -0.41 1.39 16 15 C -0.51 -13.38 8.57 -34.44 -0.30 -13.68 16 16 H 0.08 2.06 7.81 -52.49 -0.41 1.65 16 17 C 0.06 1.46 5.20 -17.82 -0.09 1.37 16 18 N -0.85 -23.29 9.51 55.43 0.53 -22.76 16 19 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.39 9.44 2.74 37.16 0.10 9.54 16 24 F -0.21 -4.97 16.31 2.25 0.04 -4.93 16 25 F -0.23 -5.08 15.04 2.25 0.03 -5.05 16 26 F -0.14 -3.65 12.93 2.25 0.03 -3.62 16 27 C -0.07 -0.97 9.69 -39.61 -0.38 -1.35 16 28 C -0.21 -2.37 9.04 -39.43 -0.36 -2.73 16 29 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 32 H 0.11 0.63 7.66 -51.92 -0.40 0.24 16 33 H 0.11 0.68 7.67 -51.93 -0.40 0.28 16 34 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.08 1.31 8.00 -51.93 -0.42 0.89 16 37 H 0.05 0.80 5.97 -51.93 -0.31 0.49 16 38 H 0.34 6.64 7.87 -39.29 -0.31 6.33 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.13 1.04 6.30 -52.48 -0.33 0.71 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -30.91 362.02 -6.74 -37.65 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.65 Total: 4.10 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.27 Total: 1.52 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.15 Total: -36.70 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -1.21 Total: -14.12 kcal Atomic # 9 Polarization: -13.69 SS G_CDS: 0.10 Total: -13.59 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.91 -6.74 -37.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896698025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.574 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds