Wall clock time and date at job start Wed Apr 1 2020 04:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 116.99991 * 2 1 4 4 O 1.20831 * 119.99805 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00150 * 179.97438 * 3 2 1 6 6 O 1.42895 * 109.47078 * 179.97438 * 5 3 2 7 7 C 1.35902 * 116.99982 * 180.02562 * 6 5 3 8 8 C 1.38733 * 120.05796 * 180.02562 * 7 6 5 9 9 C 1.38146 * 119.94442 * 180.02562 * 8 7 6 10 10 C 1.38267 * 120.05445 * 0.02790 * 9 8 7 11 11 C 1.50703 * 119.93817 * 179.97438 * 10 9 8 12 12 N 1.46894 * 109.47305 * 89.99905 * 11 10 9 13 13 C 1.46904 * 111.00006 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47038 * 34.99283 * 13 12 11 15 15 C 1.50701 * 109.47195 * 155.00140 * 13 12 11 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 13 12 17 17 C 1.37871 * 119.99694 * 180.27796 * 15 13 12 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 C 1.53005 * 109.46661 * 274.99752 * 13 12 11 24 24 F 1.39897 * 109.47542 * 299.99791 * 23 13 12 25 25 F 1.39898 * 109.46978 * 60.00183 * 23 13 12 26 26 F 1.39909 * 109.46562 * 179.97438 * 23 13 12 27 27 C 1.38262 * 120.11242 * 0.24526 * 10 9 8 28 28 C 1.38146 * 120.05418 * 359.45708 * 27 10 9 29 29 H 1.09005 * 109.47230 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47418 * 299.99802 * 1 2 3 31 31 H 1.09006 * 109.47565 * 59.99839 * 1 2 3 32 32 H 1.09010 * 109.46625 * 60.00305 * 5 3 2 33 33 H 1.08992 * 109.47053 * 300.00296 * 5 3 2 34 34 H 1.08005 * 120.02836 * 0.02562 * 8 7 6 35 35 H 1.08002 * 119.96693 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47408 * 329.99298 * 11 10 9 37 37 H 1.09003 * 109.46652 * 209.99547 * 11 10 9 38 38 H 1.00895 * 111.00231 * 56.04192 * 12 11 10 39 39 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 40 40 H 1.08002 * 119.96991 * 179.71013 * 27 10 9 41 41 H 1.08003 * 120.02863 * 180.24889 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9714 2.6452 -0.0001 7 6 5.3075 2.8936 -0.0003 8 6 5.7712 4.2011 -0.0004 9 6 7.1299 4.4509 -0.0011 10 6 8.0274 3.3991 -0.0022 11 6 9.5090 3.6746 -0.0035 12 7 9.9917 3.7638 1.3810 13 6 11.4356 4.0316 1.4188 14 1 11.7066 4.6815 0.5867 15 6 11.7873 4.7072 2.7192 16 1 11.0153 4.9170 3.4448 17 6 13.0936 5.0630 2.9799 18 7 14.0336 4.8079 2.0962 19 14 13.5283 5.9075 4.5884 20 1 13.8645 4.8834 5.6100 21 1 14.6966 6.7999 4.3791 22 1 12.3694 6.7102 5.0551 23 6 12.2021 2.7122 1.3060 24 9 11.8545 1.8780 2.3739 25 9 11.8756 2.0851 0.0988 26 9 13.5773 2.9674 1.3414 27 6 7.5677 2.0951 -0.0078 28 6 6.2101 1.8400 -0.0009 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.9563 0.7806 -0.8893 33 1 3.9556 0.7810 0.8907 34 1 5.0706 5.0231 0.0000 35 1 7.4913 5.4687 -0.0016 36 1 9.7031 4.6160 -0.5174 37 1 10.0284 2.8660 -0.5180 38 1 9.7659 2.9269 1.8973 39 1 14.9525 5.0585 2.2795 40 1 8.2708 1.2753 -0.0134 41 1 5.8515 0.8212 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896698025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:40 Heat of formation + Delta-G solvation = -241.219919 kcal Electronic energy + Delta-G solvation = -29987.512216 eV Core-core repulsion = 25032.389674 eV Total energy + Delta-G solvation = -4955.122541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.46814 -48.11401 -47.69852 -41.80866 -40.95150 -38.99866 -37.60293 -37.06843 -34.67477 -32.36267 -31.90955 -30.71241 -29.09189 -27.88623 -26.44695 -25.41136 -23.95215 -22.87124 -22.43975 -21.79742 -19.55852 -19.25417 -18.73625 -18.70384 -18.43793 -18.12636 -18.02331 -17.81990 -16.71276 -16.53344 -16.49729 -16.28716 -15.56890 -15.38291 -15.08965 -14.95169 -14.72003 -14.53402 -14.49203 -14.41022 -14.35400 -14.21329 -13.99699 -13.91045 -13.69921 -13.45628 -13.25124 -12.97805 -12.92396 -12.68091 -12.41747 -12.28286 -12.06201 -11.92082 -11.89466 -11.85909 -11.56064 -11.41562 -10.58041 -9.91689 -9.38279 -9.06453 -8.12623 -6.35795 0.40879 0.43337 0.96804 1.07307 1.46158 1.47550 1.58671 2.39809 2.46054 2.52199 2.74979 2.99472 3.44832 3.55301 3.77218 3.82575 3.86325 3.93321 4.01188 4.02335 4.08534 4.19272 4.27627 4.31036 4.34576 4.47591 4.60734 4.70011 4.77855 4.82070 4.89812 5.13221 5.19118 5.27405 5.36871 5.65071 5.75459 5.76665 5.81695 6.24050 6.32211 6.48519 6.56748 6.73202 7.32962 8.79158 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.002042 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.362836 B =13711.344450 C =14167.059267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.467 3.533 4 O -0.528 6.528 5 C 0.062 3.938 6 O -0.318 6.318 7 C 0.118 3.882 8 C -0.156 4.156 9 C -0.063 4.063 10 C -0.118 4.118 11 C 0.089 3.911 12 N -0.662 5.662 13 C 0.196 3.804 14 H 0.054 0.946 15 C -0.529 4.529 16 H 0.073 0.927 17 C 0.011 3.989 18 N -0.878 5.878 19 Si 0.970 3.030 20 H -0.278 1.278 21 H -0.281 1.281 22 H -0.264 1.264 23 C 0.395 3.605 24 F -0.207 7.207 25 F -0.220 7.220 26 F -0.154 7.154 27 C -0.078 4.078 28 C -0.199 4.199 29 H 0.138 0.862 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.338 0.662 39 H 0.264 0.736 40 H 0.133 0.867 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.357 -10.412 -5.916 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.310 3.690 4 O -0.417 6.417 5 C -0.013 4.013 6 O -0.232 6.232 7 C 0.074 3.926 8 C -0.175 4.175 9 C -0.081 4.081 10 C -0.118 4.118 11 C -0.040 4.040 12 N -0.292 5.292 13 C 0.085 3.915 14 H 0.072 0.928 15 C -0.567 4.567 16 H 0.091 0.909 17 C -0.193 4.193 18 N -0.514 5.514 19 Si 0.795 3.205 20 H -0.204 1.204 21 H -0.206 1.206 22 H -0.189 1.189 23 C 0.338 3.662 24 F -0.189 7.189 25 F -0.202 7.202 26 F -0.135 7.135 27 C -0.097 4.097 28 C -0.218 4.218 29 H 0.156 0.844 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.156 0.844 39 H 0.074 0.926 40 H 0.151 0.849 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.721 -9.324 -5.902 23.476 hybrid contribution 0.968 -0.703 0.389 1.258 sum -19.753 -10.028 -5.514 22.828 Atomic orbital electron populations 1.23639 0.73907 1.06150 1.02713 1.86450 1.25462 1.31271 1.83746 1.23410 0.91717 0.81740 0.72156 1.90719 1.67716 1.37637 1.45589 1.22191 0.87696 0.83207 1.08233 1.86020 1.21148 1.26601 1.89477 1.18989 0.81168 0.94557 0.97912 1.20543 0.95674 0.94815 1.06419 1.20962 0.91496 0.99619 0.96048 1.19749 0.94527 0.93982 1.03569 1.21095 0.91462 1.01474 0.89936 1.60672 1.12793 1.42802 1.12917 1.20246 0.83673 0.87176 1.00440 0.92786 1.21054 0.93879 1.39357 1.02373 0.90892 1.25898 0.96237 0.96206 1.00915 1.70477 1.01737 1.43350 1.35845 0.85354 0.77910 0.78283 0.78926 1.20436 1.20642 1.18868 1.24217 0.81564 0.89267 0.71113 1.92981 1.92286 1.75323 1.58313 1.92990 1.92697 1.85993 1.48497 1.93383 1.31688 1.92833 1.95610 1.21049 0.95593 0.96160 0.96893 1.21417 0.92947 0.99395 1.07996 0.84371 0.91912 0.91808 0.84552 0.84827 0.84557 0.84687 0.90550 0.93824 0.84377 0.92620 0.84908 0.82061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.35 -4.82 10.57 -51.40 -0.54 -5.36 16 3 C 0.47 8.41 8.03 71.23 0.57 8.98 16 4 O -0.53 -13.91 16.25 28.38 0.46 -13.45 16 5 C 0.06 0.85 5.33 71.23 0.38 1.23 16 6 O -0.32 -7.09 9.67 -73.37 -0.71 -7.80 16 7 C 0.12 2.70 6.69 22.51 0.15 2.85 16 8 C -0.16 -3.86 9.99 22.37 0.22 -3.64 16 9 C -0.06 -1.67 9.69 22.25 0.22 -1.45 16 10 C -0.12 -3.32 5.39 -19.85 -0.11 -3.42 16 11 C 0.09 2.95 5.51 85.56 0.47 3.42 16 12 N -0.66 -26.36 6.22 -499.45 -3.11 -29.47 16 13 C 0.20 9.35 2.26 44.17 0.10 9.45 16 14 H 0.05 2.76 7.80 -2.39 -0.02 2.74 16 15 C -0.53 -27.65 8.57 25.60 0.22 -27.43 16 16 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 17 C 0.01 0.58 5.20 84.65 0.44 1.02 16 18 N -0.88 -48.29 9.51 21.45 0.20 -48.09 16 19 Si 0.97 42.27 29.54 68.60 2.03 44.30 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 C 0.40 18.93 2.74 71.98 0.20 19.13 16 24 F -0.21 -9.77 16.31 44.97 0.73 -9.04 16 25 F -0.22 -9.47 15.04 44.97 0.68 -8.80 16 26 F -0.15 -8.29 12.93 44.97 0.58 -7.71 16 27 C -0.08 -1.87 9.69 22.25 0.22 -1.66 16 28 C -0.20 -3.92 9.04 22.37 0.20 -3.72 16 29 H 0.14 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 31 H 0.06 0.61 8.13 -2.38 -0.02 0.59 16 32 H 0.14 1.07 7.66 -2.38 -0.02 1.05 16 33 H 0.13 1.16 7.67 -2.39 -0.02 1.14 16 34 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.08 2.55 8.00 -2.39 -0.02 2.53 16 37 H 0.04 1.48 5.97 -2.39 -0.01 1.46 16 38 H 0.34 13.16 7.87 -89.70 -0.71 12.45 16 39 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 40 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.16 1.92 6.30 -2.91 -0.02 1.90 16 Total: -1.00 -66.39 362.02 5.19 -61.21 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.39 Total: 18.00 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 4.48 Total: 6.21 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -2.90 Total: -77.56 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.79 Total: -26.61 kcal Atomic # 9 Polarization: -27.54 SS G_CDS: 1.99 Total: -25.55 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -66.39 5.19 -61.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896698025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.013 kcal (2) G-P(sol) polarization free energy of solvation -66.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds