Wall clock time and date at job start Wed Apr 1 2020 04:37:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81396 * 1
3 3 O 1.42095 * 110.54479 * 2 1
4 4 O 1.42105 * 110.54014 * 223.25288 * 2 1 3
5 5 C 1.76199 * 104.44950 * 111.62561 * 2 1 3
6 6 C 1.38621 * 120.39905 * 89.99982 * 5 2 1
7 7 C 1.38590 * 118.55978 * 179.97438 * 6 5 2
8 8 N 1.32295 * 119.19311 * 359.97438 * 7 6 5
9 9 C 1.32475 * 120.74197 * 359.97438 * 8 7 6
10 10 N 1.38413 * 119.21702 * 180.02562 * 9 8 7
11 11 C 1.46498 * 119.99929 * 0.02562 * 10 9 8
12 12 H 1.09007 * 109.46961 * 34.99740 * 11 10 9
13 13 C 1.52997 * 109.47120 * 154.99781 * 11 10 9
14 14 C 1.50707 * 109.46875 * 294.99898 * 13 11 10
15 15 H 1.07997 * 120.00303 * 0.02562 * 14 13 11
16 16 C 1.37878 * 119.99480 * 179.97438 * 14 13 11
17 17 N 1.31513 * 119.99724 * 179.97438 * 16 14 13
18 18 Si 1.86796 * 120.00264 * 0.02562 * 16 14 13
19 19 H 1.48498 * 109.47263 * 89.99580 * 18 16 14
20 20 H 1.48506 * 109.47145 * 209.99679 * 18 16 14
21 21 H 1.48504 * 109.46956 * 329.99367 * 18 16 14
22 22 C 1.50695 * 109.47195 * 275.00151 * 11 10 9
23 23 C 1.38244 * 119.99611 * 319.72331 * 22 11 10
24 24 C 1.38231 * 119.99769 * 179.81436 * 23 22 11
25 25 C 1.38243 * 120.00095 * 0.39686 * 24 23 22
26 26 C 1.38227 * 119.99796 * 359.85614 * 25 24 23
27 27 C 1.38228 * 120.00498 * 140.00132 * 22 11 10
28 28 N 1.32262 * 120.40201 * 269.71770 * 5 2 1
29 29 H 1.09005 * 109.46922 * 308.37994 * 1 2 3
30 30 H 1.09000 * 109.47282 * 68.37014 * 1 2 3
31 31 H 1.08996 * 109.47338 * 188.37517 * 1 2 3
32 32 H 1.08005 * 120.72706 * 359.97438 * 6 5 2
33 33 H 1.07995 * 120.40260 * 180.02562 * 7 6 5
34 34 H 0.97004 * 119.99826 * 180.02562 * 10 9 8
35 35 H 1.08998 * 109.47295 * 54.99982 * 13 11 10
36 36 H 1.09003 * 109.46992 * 175.00132 * 13 11 10
37 37 H 0.96998 * 120.00299 * 180.02562 * 17 16 14
38 38 H 1.07995 * 120.00093 * 0.02562 * 23 22 11
39 39 H 1.07999 * 120.00336 * 180.23358 * 24 23 22
40 40 H 1.08004 * 120.00037 * 179.83741 * 25 24 23
41 41 H 1.08005 * 120.00216 * 179.97438 * 26 25 24
42 42 H 1.08004 * 120.00045 * 359.97438 * 27 22 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3126 1.3306 0.0000
4 8 2.3126 -0.9692 -0.9118
5 6 2.2536 -0.6288 1.5862
6 6 2.4286 -1.9906 1.7770
7 6 2.7748 -2.4436 3.0402
8 7 2.9275 -1.5681 4.0202
9 6 2.7538 -0.2727 3.8042
10 7 2.9221 0.6156 4.8522
11 6 3.2887 0.1196 6.1811
12 1 3.9537 -0.7380 6.0781
13 6 4.0013 1.2269 6.9600
14 6 5.3069 1.5567 6.2834
15 1 5.5990 1.0295 5.3872
16 6 6.1280 2.5322 6.8080
17 7 7.2676 2.8196 6.2179
18 14 5.6226 3.4445 8.3577
19 1 6.1370 2.7210 9.5481
20 1 6.1877 4.8175 8.3304
21 1 4.1411 3.5203 8.4265
22 6 2.0445 -0.2958 6.9230
23 6 0.8965 0.4686 6.8296
24 6 -0.2459 0.0855 7.5071
25 6 -0.2379 -1.0576 8.2846
26 6 0.9116 -1.8190 8.3821
27 6 2.0529 -1.4380 7.7015
28 7 2.4261 0.1933 2.6078
29 1 -0.3633 0.6381 0.8056
30 1 -0.3634 0.3788 -0.9553
31 1 -0.3634 -1.0166 0.1497
32 1 2.2981 -2.6838 0.9590
33 1 2.9190 -3.4983 3.2221
34 1 2.7974 1.5665 4.7068
35 1 3.3711 2.1159 6.9866
36 1 4.1949 0.8883 7.9779
37 1 7.8455 3.5056 6.5871
38 1 0.8911 1.3631 6.2246
39 1 -1.1440 0.6805 7.4311
40 1 -1.1297 -1.3555 8.8160
41 1 0.9181 -2.7118 8.9899
42 1 2.9511 -2.0330 7.7778
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000911997882.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:46
Heat of formation + Delta-G solvation = 22.877766 kcal
Electronic energy + Delta-G solvation = -27789.304689 eV
Core-core repulsion = 23862.536645 eV
Total energy + Delta-G solvation = -3926.768044 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.86801 -39.19104 -37.25418 -36.34786 -36.08401 -33.69542 -33.19469 -32.08166
-30.71500 -30.00328 -29.78806 -29.11200 -25.49436 -24.77412 -23.32589 -22.31269
-21.81600 -20.31864 -19.28488 -18.25342 -17.84578 -17.11792 -16.48174 -16.39768
-16.22002 -15.74149 -15.37670 -15.14545 -14.95007 -14.72838 -14.38796 -13.95290
-13.68273 -13.57526 -13.47172 -13.26317 -13.14873 -12.70620 -12.47791 -12.24379
-12.15212 -11.92389 -11.71618 -11.47539 -11.34541 -11.19914 -11.02373 -10.97375
-10.86259 -10.76837 -10.46150 -10.12191 -9.81178 -9.34741 -9.06125 -8.71569
-8.63525 -8.42203 -7.85349 -6.12062 -4.12844 -0.22983 0.67265 1.23519
1.57232 1.61308 2.52735 3.13023 3.25121 3.33312 3.34454 3.53238
3.87701 3.96999 4.03846 4.29546 4.36444 4.47410 4.63967 4.93954
5.04814 5.08547 5.11116 5.13989 5.19008 5.23068 5.33235 5.34431
5.38724 5.72310 5.74299 5.90188 6.11195 6.14070 6.21780 6.33156
6.65054 6.67099 6.68044 6.84702 6.92102 7.08515 7.21102 7.38093
7.61026 7.72274 8.40801 8.43105 8.92777 9.47723 11.00771
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.008923 B = 0.003942 C = 0.003073
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3137.071440 B = 7101.897055 C = 9110.576021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.644 4.644
2 S 2.507 3.493
3 O -0.909 6.909
4 O -0.928 6.928
5 C -0.328 4.328
6 C -0.232 4.232
7 C 0.191 3.809
8 N -0.528 5.528
9 C 0.563 3.437
10 N -0.657 5.657
11 C 0.206 3.794
12 H 0.097 0.903
13 C -0.014 4.014
14 C -0.524 4.524
15 H 0.075 0.925
16 C 0.072 3.928
17 N -0.895 5.895
18 Si 0.876 3.124
19 H -0.276 1.276
20 H -0.287 1.287
21 H -0.265 1.265
22 C -0.078 4.078
23 C -0.109 4.109
24 C -0.125 4.125
25 C -0.132 4.132
26 C -0.123 4.123
27 C -0.104 4.104
28 N -0.487 5.487
29 H 0.135 0.865
30 H 0.135 0.865
31 H 0.132 0.868
32 H 0.157 0.843
33 H 0.173 0.827
34 H 0.419 0.581
35 H 0.024 0.976
36 H 0.033 0.967
37 H 0.265 0.735
38 H 0.117 0.883
39 H 0.115 0.885
40 H 0.114 0.886
41 H 0.117 0.883
42 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.527 -10.687 -6.162 22.258
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.795 4.795
2 S 2.681 3.319
3 O -0.906 6.906
4 O -0.925 6.925
5 C -0.560 4.560
6 C -0.261 4.261
7 C 0.019 3.981
8 N -0.250 5.250
9 C 0.205 3.795
10 N -0.289 5.289
11 C 0.101 3.899
12 H 0.115 0.885
13 C -0.052 4.052
14 C -0.561 4.561
15 H 0.093 0.907
16 C -0.130 4.130
17 N -0.533 5.533
18 Si 0.703 3.297
19 H -0.202 1.202
20 H -0.213 1.213
21 H -0.190 1.190
22 C -0.079 4.079
23 C -0.127 4.127
24 C -0.143 4.143
25 C -0.151 4.151
26 C -0.141 4.141
27 C -0.123 4.123
28 N -0.211 5.211
29 H 0.154 0.846
30 H 0.154 0.846
31 H 0.151 0.849
32 H 0.175 0.825
33 H 0.190 0.810
34 H 0.257 0.743
35 H 0.043 0.957
36 H 0.051 0.949
37 H 0.074 0.926
38 H 0.135 0.865
39 H 0.133 0.867
40 H 0.132 0.868
41 H 0.135 0.865
42 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -17.570 -9.651 -5.746 20.853
hybrid contribution -0.631 -0.010 0.897 1.097
sum -18.201 -9.661 -4.849 21.169
Atomic orbital electron populations
1.30156 1.24982 1.12159 1.12225 1.05557 0.78232 0.74890 0.73200
1.93634 1.76703 1.35449 1.84792 1.93616 1.77683 1.62322 1.58868
1.33420 1.05246 0.99154 1.18208 1.22220 1.07382 0.95730 1.00773
1.23063 0.88013 0.99494 0.87565 1.68020 1.19081 1.02096 1.35786
1.19583 0.87581 0.86199 0.86170 1.44407 1.70456 1.07948 1.06093
1.20075 0.91031 0.99528 0.79247 0.88460 1.19898 0.96497 0.92949
0.95870 1.20971 1.01628 1.21012 1.12524 0.90729 1.24983 0.94649
0.96483 0.96898 1.69904 1.11116 1.32161 1.40139 0.86845 0.79410
0.79456 0.83970 1.20185 1.21264 1.18990 1.20580 0.95972 0.94385
0.96973 1.20969 0.92764 0.99539 0.99463 1.21059 0.98027 0.97202
0.98035 1.21029 0.98086 0.95943 0.99993 1.21064 0.93296 0.99789
0.99964 1.21017 0.98245 0.96171 0.96833 1.68026 1.17226 1.37233
0.98571 0.84593 0.84617 0.84944 0.82529 0.81044 0.74263 0.95741
0.94889 0.92556 0.86501 0.86692 0.86761 0.86477 0.85912
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.64 -3.61 10.80 101.05 1.09 -2.52 16
2 S 2.51 27.15 5.88 -107.50 -0.63 26.52 16
3 O -0.91 -13.96 17.76 -57.54 -1.02 -14.98 16
4 O -0.93 -11.56 17.20 -57.54 -0.99 -12.55 16
5 C -0.33 -4.52 6.57 -17.23 -0.11 -4.63 16
6 C -0.23 -2.75 9.58 -39.31 -0.38 -3.12 16
7 C 0.19 2.43 11.30 -17.22 -0.19 2.23 16
8 N -0.53 -8.74 9.20 -13.93 -0.13 -8.87 16
9 C 0.56 10.18 8.40 -322.80 -2.71 7.47 16
10 N -0.66 -12.26 4.18 -56.93 -0.24 -12.50 16
11 C 0.21 3.91 2.11 -69.09 -0.15 3.77 16
12 H 0.10 1.97 7.37 -51.92 -0.38 1.59 16
13 C -0.01 -0.32 3.56 -27.88 -0.10 -0.42 16
14 C -0.52 -14.18 9.39 -34.44 -0.32 -14.50 16
15 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16
16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16
17 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16
18 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16
19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
21 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16
22 C -0.08 -1.28 4.93 -104.63 -0.52 -1.80 16
23 C -0.11 -1.67 9.32 -39.58 -0.37 -2.04 16
24 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16
25 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16
26 C -0.12 -1.59 10.05 -39.59 -0.40 -1.99 16
27 C -0.10 -1.56 9.67 -39.59 -0.38 -1.94 16
28 N -0.49 -8.33 10.19 -13.13 -0.13 -8.47 16
29 H 0.14 0.72 8.14 -51.92 -0.42 0.30 16
30 H 0.14 0.47 8.14 -51.92 -0.42 0.05 16
31 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16
32 H 0.16 1.31 7.66 -52.48 -0.40 0.91 16
33 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16
34 H 0.42 7.77 8.72 -40.82 -0.36 7.42 16
35 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16
36 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16
37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
38 H 0.12 1.75 7.73 -52.49 -0.41 1.34 16
39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16
40 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16
41 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16
42 H 0.12 1.73 8.04 -52.48 -0.42 1.30 16
LS Contribution 375.06 15.07 5.65 5.65
Total: -1.00 -37.30 375.06 -12.10 -49.40
By element:
Atomic # 1 Polarization: 12.80 SS G_CDS: -5.28 Total: 7.52 kcal
Atomic # 6 Polarization: -16.23 SS G_CDS: -5.43 Total: -21.66 kcal
Atomic # 7 Polarization: -56.52 SS G_CDS: 0.27 Total: -56.25 kcal
Atomic # 8 Polarization: -25.52 SS G_CDS: -2.01 Total: -27.54 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal
Atomic # 16 Polarization: 27.15 SS G_CDS: -0.63 Total: 26.52 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -37.30 -12.10 -49.40 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000911997882.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.274 kcal
(2) G-P(sol) polarization free energy of solvation -37.298 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.975 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.097 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.396 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.878 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds