Wall clock time and date at job start Wed Apr 1 2020 04:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42095 * 110.54479 * 2 1 4 4 O 1.42105 * 110.54014 * 223.25288 * 2 1 3 5 5 C 1.76199 * 104.44950 * 111.62561 * 2 1 3 6 6 C 1.38621 * 120.39905 * 89.99982 * 5 2 1 7 7 C 1.38590 * 118.55978 * 179.97438 * 6 5 2 8 8 N 1.32295 * 119.19311 * 359.97438 * 7 6 5 9 9 C 1.32475 * 120.74197 * 359.97438 * 8 7 6 10 10 N 1.38413 * 119.21702 * 180.02562 * 9 8 7 11 11 C 1.46498 * 119.99929 * 0.02562 * 10 9 8 12 12 H 1.09007 * 109.46961 * 34.99740 * 11 10 9 13 13 C 1.52997 * 109.47120 * 154.99781 * 11 10 9 14 14 C 1.50707 * 109.46875 * 294.99898 * 13 11 10 15 15 H 1.07997 * 120.00303 * 0.02562 * 14 13 11 16 16 C 1.37878 * 119.99480 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99724 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00264 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47263 * 89.99580 * 18 16 14 20 20 H 1.48506 * 109.47145 * 209.99679 * 18 16 14 21 21 H 1.48504 * 109.46956 * 329.99367 * 18 16 14 22 22 C 1.50695 * 109.47195 * 275.00151 * 11 10 9 23 23 C 1.38244 * 119.99611 * 319.72331 * 22 11 10 24 24 C 1.38231 * 119.99769 * 179.81436 * 23 22 11 25 25 C 1.38243 * 120.00095 * 0.39686 * 24 23 22 26 26 C 1.38227 * 119.99796 * 359.85614 * 25 24 23 27 27 C 1.38228 * 120.00498 * 140.00132 * 22 11 10 28 28 N 1.32262 * 120.40201 * 269.71770 * 5 2 1 29 29 H 1.09005 * 109.46922 * 308.37994 * 1 2 3 30 30 H 1.09000 * 109.47282 * 68.37014 * 1 2 3 31 31 H 1.08996 * 109.47338 * 188.37517 * 1 2 3 32 32 H 1.08005 * 120.72706 * 359.97438 * 6 5 2 33 33 H 1.07995 * 120.40260 * 180.02562 * 7 6 5 34 34 H 0.97004 * 119.99826 * 180.02562 * 10 9 8 35 35 H 1.08998 * 109.47295 * 54.99982 * 13 11 10 36 36 H 1.09003 * 109.46992 * 175.00132 * 13 11 10 37 37 H 0.96998 * 120.00299 * 180.02562 * 17 16 14 38 38 H 1.07995 * 120.00093 * 0.02562 * 23 22 11 39 39 H 1.07999 * 120.00336 * 180.23358 * 24 23 22 40 40 H 1.08004 * 120.00037 * 179.83741 * 25 24 23 41 41 H 1.08005 * 120.00216 * 179.97438 * 26 25 24 42 42 H 1.08004 * 120.00045 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2536 -0.6288 1.5862 6 6 2.4286 -1.9906 1.7770 7 6 2.7748 -2.4436 3.0402 8 7 2.9275 -1.5681 4.0202 9 6 2.7538 -0.2727 3.8042 10 7 2.9221 0.6156 4.8522 11 6 3.2887 0.1196 6.1811 12 1 3.9537 -0.7380 6.0781 13 6 4.0013 1.2269 6.9600 14 6 5.3069 1.5567 6.2834 15 1 5.5990 1.0295 5.3872 16 6 6.1280 2.5322 6.8080 17 7 7.2676 2.8196 6.2179 18 14 5.6226 3.4445 8.3577 19 1 6.1370 2.7210 9.5481 20 1 6.1877 4.8175 8.3304 21 1 4.1411 3.5203 8.4265 22 6 2.0445 -0.2958 6.9230 23 6 0.8965 0.4686 6.8296 24 6 -0.2459 0.0855 7.5071 25 6 -0.2379 -1.0576 8.2846 26 6 0.9116 -1.8190 8.3821 27 6 2.0529 -1.4380 7.7015 28 7 2.4261 0.1933 2.6078 29 1 -0.3633 0.6381 0.8056 30 1 -0.3634 0.3788 -0.9553 31 1 -0.3634 -1.0166 0.1497 32 1 2.2981 -2.6838 0.9590 33 1 2.9190 -3.4983 3.2221 34 1 2.7974 1.5665 4.7068 35 1 3.3711 2.1159 6.9866 36 1 4.1949 0.8883 7.9779 37 1 7.8455 3.5056 6.5871 38 1 0.8911 1.3631 6.2246 39 1 -1.1440 0.6805 7.4311 40 1 -1.1297 -1.3555 8.8160 41 1 0.9181 -2.7118 8.9899 42 1 2.9511 -2.0330 7.7778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911997882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:46 Heat of formation + Delta-G solvation = 22.877766 kcal Electronic energy + Delta-G solvation = -27789.304689 eV Core-core repulsion = 23862.536645 eV Total energy + Delta-G solvation = -3926.768044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86801 -39.19104 -37.25418 -36.34786 -36.08401 -33.69542 -33.19469 -32.08166 -30.71500 -30.00328 -29.78806 -29.11200 -25.49436 -24.77412 -23.32589 -22.31269 -21.81600 -20.31864 -19.28488 -18.25342 -17.84578 -17.11792 -16.48174 -16.39768 -16.22002 -15.74149 -15.37670 -15.14545 -14.95007 -14.72838 -14.38796 -13.95290 -13.68273 -13.57526 -13.47172 -13.26317 -13.14873 -12.70620 -12.47791 -12.24379 -12.15212 -11.92389 -11.71618 -11.47539 -11.34541 -11.19914 -11.02373 -10.97375 -10.86259 -10.76837 -10.46150 -10.12191 -9.81178 -9.34741 -9.06125 -8.71569 -8.63525 -8.42203 -7.85349 -6.12062 -4.12844 -0.22983 0.67265 1.23519 1.57232 1.61308 2.52735 3.13023 3.25121 3.33312 3.34454 3.53238 3.87701 3.96999 4.03846 4.29546 4.36444 4.47410 4.63967 4.93954 5.04814 5.08547 5.11116 5.13989 5.19008 5.23068 5.33235 5.34431 5.38724 5.72310 5.74299 5.90188 6.11195 6.14070 6.21780 6.33156 6.65054 6.67099 6.68044 6.84702 6.92102 7.08515 7.21102 7.38093 7.61026 7.72274 8.40801 8.43105 8.92777 9.47723 11.00771 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.008923 B = 0.003942 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.071440 B = 7101.897055 C = 9110.576021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.507 3.493 3 O -0.909 6.909 4 O -0.928 6.928 5 C -0.328 4.328 6 C -0.232 4.232 7 C 0.191 3.809 8 N -0.528 5.528 9 C 0.563 3.437 10 N -0.657 5.657 11 C 0.206 3.794 12 H 0.097 0.903 13 C -0.014 4.014 14 C -0.524 4.524 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.078 4.078 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.132 4.132 26 C -0.123 4.123 27 C -0.104 4.104 28 N -0.487 5.487 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.173 0.827 34 H 0.419 0.581 35 H 0.024 0.976 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.527 -10.687 -6.162 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.681 3.319 3 O -0.906 6.906 4 O -0.925 6.925 5 C -0.560 4.560 6 C -0.261 4.261 7 C 0.019 3.981 8 N -0.250 5.250 9 C 0.205 3.795 10 N -0.289 5.289 11 C 0.101 3.899 12 H 0.115 0.885 13 C -0.052 4.052 14 C -0.561 4.561 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.533 5.533 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.079 4.079 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.141 4.141 27 C -0.123 4.123 28 N -0.211 5.211 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.175 0.825 33 H 0.190 0.810 34 H 0.257 0.743 35 H 0.043 0.957 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.570 -9.651 -5.746 20.853 hybrid contribution -0.631 -0.010 0.897 1.097 sum -18.201 -9.661 -4.849 21.169 Atomic orbital electron populations 1.30156 1.24982 1.12159 1.12225 1.05557 0.78232 0.74890 0.73200 1.93634 1.76703 1.35449 1.84792 1.93616 1.77683 1.62322 1.58868 1.33420 1.05246 0.99154 1.18208 1.22220 1.07382 0.95730 1.00773 1.23063 0.88013 0.99494 0.87565 1.68020 1.19081 1.02096 1.35786 1.19583 0.87581 0.86199 0.86170 1.44407 1.70456 1.07948 1.06093 1.20075 0.91031 0.99528 0.79247 0.88460 1.19898 0.96497 0.92949 0.95870 1.20971 1.01628 1.21012 1.12524 0.90729 1.24983 0.94649 0.96483 0.96898 1.69904 1.11116 1.32161 1.40139 0.86845 0.79410 0.79456 0.83970 1.20185 1.21264 1.18990 1.20580 0.95972 0.94385 0.96973 1.20969 0.92764 0.99539 0.99463 1.21059 0.98027 0.97202 0.98035 1.21029 0.98086 0.95943 0.99993 1.21064 0.93296 0.99789 0.99964 1.21017 0.98245 0.96171 0.96833 1.68026 1.17226 1.37233 0.98571 0.84593 0.84617 0.84944 0.82529 0.81044 0.74263 0.95741 0.94889 0.92556 0.86501 0.86692 0.86761 0.86477 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -3.61 10.80 101.05 1.09 -2.52 16 2 S 2.51 27.15 5.88 -107.50 -0.63 26.52 16 3 O -0.91 -13.96 17.76 -57.54 -1.02 -14.98 16 4 O -0.93 -11.56 17.20 -57.54 -0.99 -12.55 16 5 C -0.33 -4.52 6.57 -17.23 -0.11 -4.63 16 6 C -0.23 -2.75 9.58 -39.31 -0.38 -3.12 16 7 C 0.19 2.43 11.30 -17.22 -0.19 2.23 16 8 N -0.53 -8.74 9.20 -13.93 -0.13 -8.87 16 9 C 0.56 10.18 8.40 -322.80 -2.71 7.47 16 10 N -0.66 -12.26 4.18 -56.93 -0.24 -12.50 16 11 C 0.21 3.91 2.11 -69.09 -0.15 3.77 16 12 H 0.10 1.97 7.37 -51.92 -0.38 1.59 16 13 C -0.01 -0.32 3.56 -27.88 -0.10 -0.42 16 14 C -0.52 -14.18 9.39 -34.44 -0.32 -14.50 16 15 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 18 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 22 C -0.08 -1.28 4.93 -104.63 -0.52 -1.80 16 23 C -0.11 -1.67 9.32 -39.58 -0.37 -2.04 16 24 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 25 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 26 C -0.12 -1.59 10.05 -39.59 -0.40 -1.99 16 27 C -0.10 -1.56 9.67 -39.59 -0.38 -1.94 16 28 N -0.49 -8.33 10.19 -13.13 -0.13 -8.47 16 29 H 0.14 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.14 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.16 1.31 7.66 -52.48 -0.40 0.91 16 33 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.42 7.77 8.72 -40.82 -0.36 7.42 16 35 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 36 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.12 1.75 7.73 -52.49 -0.41 1.34 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 42 H 0.12 1.73 8.04 -52.48 -0.42 1.30 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -37.30 375.06 -12.10 -49.40 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.28 Total: 7.52 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -5.43 Total: -21.66 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.27 Total: -56.25 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -2.01 Total: -27.54 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 16 Polarization: 27.15 SS G_CDS: -0.63 Total: 26.52 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.30 -12.10 -49.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911997882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.274 kcal (2) G-P(sol) polarization free energy of solvation -37.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds