Wall clock time and date at job start Wed Apr 1 2020 04:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42095 * 110.54479 * 2 1 4 4 O 1.42105 * 110.54014 * 223.25288 * 2 1 3 5 5 C 1.76199 * 104.44950 * 111.62561 * 2 1 3 6 6 C 1.38621 * 120.39905 * 89.99982 * 5 2 1 7 7 C 1.38590 * 118.55978 * 179.97438 * 6 5 2 8 8 N 1.32295 * 119.19311 * 359.97438 * 7 6 5 9 9 C 1.32475 * 120.74197 * 359.97438 * 8 7 6 10 10 N 1.38413 * 119.21702 * 180.02562 * 9 8 7 11 11 C 1.46498 * 119.99929 * 0.02562 * 10 9 8 12 12 H 1.09007 * 109.46961 * 34.99740 * 11 10 9 13 13 C 1.52997 * 109.47120 * 154.99781 * 11 10 9 14 14 C 1.50707 * 109.46875 * 294.99898 * 13 11 10 15 15 H 1.07997 * 120.00303 * 0.02562 * 14 13 11 16 16 C 1.37878 * 119.99480 * 179.97438 * 14 13 11 17 17 N 1.31513 * 119.99724 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00264 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47263 * 89.99580 * 18 16 14 20 20 H 1.48506 * 109.47145 * 209.99679 * 18 16 14 21 21 H 1.48504 * 109.46956 * 329.99367 * 18 16 14 22 22 C 1.50695 * 109.47195 * 275.00151 * 11 10 9 23 23 C 1.38244 * 119.99611 * 319.72331 * 22 11 10 24 24 C 1.38231 * 119.99769 * 179.81436 * 23 22 11 25 25 C 1.38243 * 120.00095 * 0.39686 * 24 23 22 26 26 C 1.38227 * 119.99796 * 359.85614 * 25 24 23 27 27 C 1.38228 * 120.00498 * 140.00132 * 22 11 10 28 28 N 1.32262 * 120.40201 * 269.71770 * 5 2 1 29 29 H 1.09005 * 109.46922 * 308.37994 * 1 2 3 30 30 H 1.09000 * 109.47282 * 68.37014 * 1 2 3 31 31 H 1.08996 * 109.47338 * 188.37517 * 1 2 3 32 32 H 1.08005 * 120.72706 * 359.97438 * 6 5 2 33 33 H 1.07995 * 120.40260 * 180.02562 * 7 6 5 34 34 H 0.97004 * 119.99826 * 180.02562 * 10 9 8 35 35 H 1.08998 * 109.47295 * 54.99982 * 13 11 10 36 36 H 1.09003 * 109.46992 * 175.00132 * 13 11 10 37 37 H 0.96998 * 120.00299 * 180.02562 * 17 16 14 38 38 H 1.07995 * 120.00093 * 0.02562 * 23 22 11 39 39 H 1.07999 * 120.00336 * 180.23358 * 24 23 22 40 40 H 1.08004 * 120.00037 * 179.83741 * 25 24 23 41 41 H 1.08005 * 120.00216 * 179.97438 * 26 25 24 42 42 H 1.08004 * 120.00045 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2536 -0.6288 1.5862 6 6 2.4286 -1.9906 1.7770 7 6 2.7748 -2.4436 3.0402 8 7 2.9275 -1.5681 4.0202 9 6 2.7538 -0.2727 3.8042 10 7 2.9221 0.6156 4.8522 11 6 3.2887 0.1196 6.1811 12 1 3.9537 -0.7380 6.0781 13 6 4.0013 1.2269 6.9600 14 6 5.3069 1.5567 6.2834 15 1 5.5990 1.0295 5.3872 16 6 6.1280 2.5322 6.8080 17 7 7.2676 2.8196 6.2179 18 14 5.6226 3.4445 8.3577 19 1 6.1370 2.7210 9.5481 20 1 6.1877 4.8175 8.3304 21 1 4.1411 3.5203 8.4265 22 6 2.0445 -0.2958 6.9230 23 6 0.8965 0.4686 6.8296 24 6 -0.2459 0.0855 7.5071 25 6 -0.2379 -1.0576 8.2846 26 6 0.9116 -1.8190 8.3821 27 6 2.0529 -1.4380 7.7015 28 7 2.4261 0.1933 2.6078 29 1 -0.3633 0.6381 0.8056 30 1 -0.3634 0.3788 -0.9553 31 1 -0.3634 -1.0166 0.1497 32 1 2.2981 -2.6838 0.9590 33 1 2.9190 -3.4983 3.2221 34 1 2.7974 1.5665 4.7068 35 1 3.3711 2.1159 6.9866 36 1 4.1949 0.8883 7.9779 37 1 7.8455 3.5056 6.5871 38 1 0.8911 1.3631 6.2246 39 1 -1.1440 0.6805 7.4311 40 1 -1.1297 -1.3555 8.8160 41 1 0.9181 -2.7118 8.9899 42 1 2.9511 -2.0330 7.7778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911997882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:45 Heat of formation + Delta-G solvation = -3.399886 kcal Electronic energy + Delta-G solvation = -27790.444173 eV Core-core repulsion = 23862.536645 eV Total energy + Delta-G solvation = -3927.907528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.02639 -40.32808 -38.21247 -37.65935 -37.06236 -35.03640 -34.83941 -33.59751 -31.76645 -31.14395 -30.78052 -30.33690 -26.91481 -26.04728 -24.50048 -23.53545 -23.24783 -21.63024 -20.30824 -19.34746 -19.11311 -18.91788 -17.62559 -17.40311 -17.30069 -16.71265 -16.45372 -16.42037 -16.28287 -16.00244 -15.83421 -15.14421 -14.95680 -14.69954 -14.40489 -14.17586 -14.02092 -13.96981 -13.84310 -13.56506 -13.21445 -13.15633 -13.11251 -12.89266 -12.54574 -12.48793 -12.28430 -12.12351 -12.04638 -11.91538 -11.89005 -11.74490 -11.57445 -11.24880 -10.81995 -10.21183 -9.76520 -9.56954 -9.12308 -8.31867 -6.37299 -1.01985 -0.40064 0.12868 0.48852 0.55783 1.33503 1.35175 1.46323 1.63677 1.90510 2.32173 2.56922 2.93134 2.95927 3.01118 3.03860 3.35133 3.72418 3.90818 4.01298 4.03418 4.09394 4.20460 4.22459 4.25978 4.31068 4.34299 4.41421 4.56623 4.72098 4.75662 4.92978 4.98398 5.10547 5.13645 5.18114 5.29467 5.51832 5.56897 5.64718 5.64909 5.83851 6.07646 6.17406 6.20369 6.40791 6.69858 7.17743 7.26994 8.85075 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.008923 B = 0.003942 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3137.071440 B = 7101.897055 C = 9110.576021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.607 4.607 2 S 2.507 3.493 3 O -0.967 6.967 4 O -0.950 6.950 5 C -0.348 4.348 6 C -0.217 4.217 7 C 0.183 3.817 8 N -0.552 5.552 9 C 0.541 3.459 10 N -0.671 5.671 11 C 0.222 3.778 12 H 0.072 0.928 13 C -0.007 4.007 14 C -0.520 4.520 15 H 0.025 0.975 16 C 0.008 3.992 17 N -0.950 5.950 18 Si 0.949 3.051 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.244 1.244 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.119 4.119 28 N -0.518 5.518 29 H 0.145 0.855 30 H 0.168 0.832 31 H 0.166 0.834 32 H 0.197 0.803 33 H 0.215 0.785 34 H 0.412 0.588 35 H 0.030 0.970 36 H 0.038 0.962 37 H 0.266 0.734 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.711 -12.467 -5.286 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.763 4.763 2 S 2.685 3.315 3 O -0.964 6.964 4 O -0.946 6.946 5 C -0.576 4.576 6 C -0.244 4.244 7 C 0.012 3.988 8 N -0.274 5.274 9 C 0.183 3.817 10 N -0.304 5.304 11 C 0.116 3.884 12 H 0.090 0.910 13 C -0.045 4.045 14 C -0.558 4.558 15 H 0.043 0.957 16 C -0.189 4.189 17 N -0.590 5.590 18 Si 0.772 3.228 19 H -0.190 1.190 20 H -0.213 1.213 21 H -0.168 1.168 22 C -0.096 4.096 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.137 4.137 28 N -0.241 5.241 29 H 0.163 0.837 30 H 0.186 0.814 31 H 0.184 0.816 32 H 0.214 0.786 33 H 0.231 0.769 34 H 0.249 0.751 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.724 -11.489 -4.884 25.055 hybrid contribution 0.571 0.364 0.418 0.796 sum -21.152 -11.125 -4.465 24.313 Atomic orbital electron populations 1.29919 1.16941 1.14937 1.14512 1.05566 0.81157 0.73150 0.71667 1.93568 1.79955 1.37807 1.85042 1.93576 1.80192 1.62194 1.58657 1.34087 1.05035 1.00103 1.18358 1.22745 1.04612 0.95584 1.01492 1.23905 0.86713 1.00841 0.87321 1.68044 1.19893 1.01950 1.37527 1.19713 0.88806 0.86783 0.86421 1.44281 1.71863 1.07775 1.06461 1.19632 0.92035 0.97090 0.79606 0.90954 1.19763 0.94260 0.94496 0.95971 1.21179 1.03687 1.20011 1.10919 0.95654 1.25966 0.94471 0.97642 1.00794 1.70079 1.12895 1.33515 1.42558 0.85681 0.80158 0.77660 0.79264 1.19037 1.21250 1.16762 1.20325 0.95248 0.95947 0.98120 1.21036 0.93344 0.99575 1.00255 1.21371 0.97956 0.97771 0.97256 1.21459 0.98993 0.94914 0.98971 1.21397 0.92488 1.00616 0.99282 1.21145 0.99384 0.95914 0.97289 1.68008 1.18575 1.38569 0.98968 0.83669 0.81388 0.81580 0.78583 0.76879 0.75097 0.95190 0.94393 0.92524 0.87148 0.84197 0.83323 0.83618 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -4.46 10.80 113.37 1.22 -3.24 16 2 S 2.51 52.71 5.88 -56.49 -0.33 52.38 16 3 O -0.97 -31.08 17.76 -127.65 -2.27 -33.34 16 4 O -0.95 -22.68 17.20 -127.65 -2.20 -24.87 16 5 C -0.35 -9.57 6.57 84.72 0.56 -9.01 16 6 C -0.22 -4.80 9.58 22.45 0.22 -4.58 16 7 C 0.18 4.47 11.30 84.71 0.96 5.43 16 8 N -0.55 -18.82 9.20 -197.99 -1.82 -20.65 16 9 C 0.54 20.68 8.40 261.49 2.20 22.88 16 10 N -0.67 -26.93 4.18 -334.02 -1.40 -28.33 16 11 C 0.22 8.90 2.11 44.24 0.09 8.99 16 12 H 0.07 3.18 7.37 -2.38 -0.02 3.16 16 13 C -0.01 -0.33 3.56 29.85 0.11 -0.22 16 14 C -0.52 -29.89 9.39 25.60 0.24 -29.65 16 15 H 0.03 1.66 7.99 -2.91 -0.02 1.63 16 16 C 0.01 0.49 5.47 84.66 0.46 0.95 16 17 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 18 Si 0.95 44.23 27.47 68.60 1.88 46.12 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 22 C -0.09 -3.17 4.93 -19.87 -0.10 -3.26 16 23 C -0.12 -3.73 9.32 22.27 0.21 -3.52 16 24 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 25 C -0.13 -2.64 10.05 22.27 0.22 -2.41 16 26 C -0.12 -2.75 10.05 22.27 0.22 -2.52 16 27 C -0.12 -3.46 9.67 22.27 0.22 -3.25 16 28 N -0.52 -18.56 10.19 -195.45 -1.99 -20.56 16 29 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.17 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.17 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.20 2.63 7.66 -2.91 -0.02 2.61 16 33 H 0.21 3.11 8.06 -2.91 -0.02 3.08 16 34 H 0.41 16.76 8.72 -92.71 -0.81 15.95 16 35 H 0.03 1.34 7.20 -2.39 -0.02 1.33 16 36 H 0.04 1.70 7.57 -2.39 -0.02 1.68 16 37 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 38 H 0.11 3.37 7.73 -2.91 -0.02 3.34 16 39 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.12 3.44 8.04 -2.91 -0.02 3.41 16 Total: -1.00 -88.83 375.06 -0.59 -89.42 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.19 Total: 26.45 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 7.05 Total: -26.21 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -4.91 Total: -129.93 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -4.46 Total: -58.22 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.12 kcal Atomic # 16 Polarization: 52.71 SS G_CDS: -0.33 Total: 52.38 kcal Total: -88.83 -0.59 -89.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911997882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.016 kcal (2) G-P(sol) polarization free energy of solvation -88.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds