Wall clock time and date at job start Wed Apr 1 2020 04:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81399 * 107.16752 * 2 1 4 4 O 1.42104 * 113.54129 * 233.80290 * 2 1 3 5 5 N 1.49352 * 107.52361 * 115.33903 * 2 1 3 6 6 C 1.31700 * 119.99985 * 179.97438 * 5 2 1 7 7 O 1.22303 * 119.99957 * 0.02562 * 6 5 2 8 8 C 1.47894 * 120.00327 * 179.97438 * 6 5 2 9 9 C 1.39911 * 127.60765 * 359.97438 * 8 6 5 10 10 N 1.31359 * 107.98985 * 179.97438 * 9 8 6 11 11 N 1.28320 * 111.78902 * 359.97438 * 10 9 8 12 12 C 1.46491 * 125.09418 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46957 * 90.02537 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.37017 * 109.81789 * 0.26777 * 11 10 9 22 22 C 1.46200 * 127.18854 * 179.71738 * 21 11 10 23 23 C 1.40972 * 120.23775 * 314.71605 * 22 21 11 24 24 C 1.36523 * 119.74036 * 179.74120 * 23 22 21 25 25 C 1.38900 * 120.25131 * 0.54249 * 24 23 22 26 26 C 1.38910 * 120.49861 * 359.73338 * 25 24 23 27 27 C 1.36523 * 120.24870 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46933 * 304.65757 * 1 2 3 29 29 H 1.08997 * 109.47228 * 64.65807 * 1 2 3 30 30 H 1.09002 * 109.47131 * 184.66008 * 1 2 3 31 31 H 1.09000 * 109.47664 * 173.80541 * 3 2 1 32 32 H 1.09008 * 109.47167 * 293.80554 * 3 2 1 33 33 H 1.09003 * 109.47244 * 53.80099 * 3 2 1 34 34 H 1.08001 * 126.01136 * 0.03024 * 9 8 6 35 35 H 1.09004 * 109.47166 * 330.02803 * 12 11 10 36 36 H 1.08994 * 109.47507 * 210.02509 * 12 11 10 37 37 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 38 38 H 1.08004 * 120.12867 * 0.02562 * 23 22 21 39 39 H 1.08005 * 119.87535 * 180.29917 * 24 23 22 40 40 H 1.07998 * 119.75480 * 179.71818 * 25 24 23 41 41 H 1.07999 * 119.87617 * 180.02562 * 26 25 24 42 42 H 1.07997 * 120.13192 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.3494 1.7332 0.0000 4 8 2.3815 -0.7694 -1.0513 5 7 2.2636 -0.6095 1.2872 6 6 3.5495 -0.7318 1.5441 7 8 4.3754 -0.3457 0.7288 8 6 3.9949 -1.3348 2.8190 9 6 3.1951 -1.8247 3.8571 10 7 3.9883 -2.2733 4.8032 11 7 5.2257 -2.1300 4.4951 12 6 6.3553 -2.5298 5.3379 13 6 6.7408 -3.9515 5.0198 14 1 6.1988 -4.5021 4.2651 15 6 7.7894 -4.5475 5.6880 16 7 8.4495 -3.8769 6.6068 17 14 8.2721 -6.3071 5.2883 18 1 9.2877 -6.3079 4.2048 19 1 8.8401 -6.9519 6.4995 20 1 7.0725 -7.0606 4.8428 21 6 5.3323 -1.5410 3.2626 22 6 6.5623 -1.1980 2.5505 23 6 7.6210 -0.5605 3.2286 24 6 8.7671 -0.2497 2.5550 25 6 8.8878 -0.5490 1.2040 26 6 7.8487 -1.1719 0.5244 27 6 6.6959 -1.4972 1.1794 28 1 -0.3633 0.5844 0.8453 29 1 -0.3633 0.4398 -0.9287 30 1 -0.3633 -1.0243 0.0835 31 1 3.4328 1.7789 0.1109 32 1 2.0603 2.2028 -0.9403 33 1 1.8767 2.2595 0.8293 34 1 2.1153 -1.8334 3.8769 35 1 6.0694 -2.4570 6.3872 36 1 7.2028 -1.8719 5.1457 37 1 9.1870 -4.2963 7.0771 38 1 7.5277 -0.3231 4.2781 39 1 9.5815 0.2344 3.0736 40 1 9.7962 -0.2954 0.6779 41 1 7.9534 -1.4004 -0.5259 42 1 5.8894 -1.9818 0.6493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913642058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:45 Heat of formation + Delta-G solvation = 81.680151 kcal Electronic energy + Delta-G solvation = -28259.088771 eV Core-core repulsion = 24334.870590 eV Total energy + Delta-G solvation = -3924.218181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.39229 -38.93892 -38.21509 -36.47942 -33.76557 -33.11729 -31.81463 -31.56332 -30.47097 -30.39703 -29.48000 -28.27187 -27.19339 -24.14423 -23.04155 -22.08545 -21.82749 -20.15930 -18.98327 -18.09795 -17.19897 -16.72520 -16.47310 -16.22496 -16.11231 -15.54998 -14.81628 -14.76036 -14.56685 -14.16305 -14.06528 -13.91986 -13.71854 -13.55022 -13.43859 -13.29729 -13.13747 -12.96023 -12.47919 -12.24715 -12.11966 -11.97879 -11.61240 -11.35753 -11.04945 -10.88388 -10.76294 -10.46452 -10.31075 -10.14924 -9.79043 -9.75973 -9.52114 -9.36074 -8.74130 -8.62405 -8.35987 -8.10179 -7.42983 -6.25630 -4.31623 -0.89540 1.43655 2.09296 2.13309 2.47253 2.86592 3.14659 3.25807 3.31414 3.37789 3.59727 3.71647 4.09769 4.12314 4.33359 4.35692 4.46239 4.51974 4.65465 4.98171 5.09080 5.21899 5.40025 5.44676 5.45949 5.50495 5.64737 5.85417 5.97621 6.04100 6.26141 6.27811 6.49954 6.63067 6.83542 6.86313 6.96956 7.04352 7.05829 7.16819 7.34713 7.53399 7.65868 7.84008 7.86615 8.50635 8.70557 9.11244 9.34273 10.83060 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.003617 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.712709 B = 7739.729729 C = 8817.747059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.537 4.537 2 S 2.298 3.702 3 C -0.629 4.629 4 O -0.923 6.923 5 N -1.113 6.113 6 C 0.630 3.370 7 O -0.582 6.582 8 C -0.234 4.234 9 C 0.038 3.962 10 N -0.305 5.305 11 N -0.233 5.233 12 C 0.239 3.761 13 C -0.535 4.535 14 H 0.066 0.934 15 C 0.069 3.931 16 N -0.890 5.890 17 Si 0.907 3.093 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.102 3.898 22 C -0.015 4.015 23 C -0.092 4.092 24 C -0.127 4.127 25 C -0.119 4.119 26 C -0.130 4.130 27 C -0.049 4.049 28 H 0.145 0.855 29 H 0.135 0.865 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.180 0.820 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.268 0.732 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.072 13.683 -13.232 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.695 4.695 2 S 2.494 3.506 3 C -0.784 4.784 4 O -0.908 6.908 5 N -1.021 6.021 6 C 0.420 3.580 7 O -0.464 6.464 8 C -0.250 4.250 9 C -0.138 4.138 10 N -0.135 5.135 11 N -0.015 5.015 12 C 0.123 3.877 13 C -0.573 4.573 14 H 0.084 0.916 15 C -0.135 4.135 16 N -0.528 5.528 17 Si 0.734 3.266 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.196 1.196 21 C -0.032 4.032 22 C -0.016 4.016 23 C -0.111 4.111 24 C -0.145 4.145 25 C -0.137 4.137 26 C -0.148 4.148 27 C -0.069 4.069 28 H 0.163 0.837 29 H 0.154 0.846 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.197 0.803 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.409 12.591 -12.526 22.254 hybrid contribution 0.345 -0.017 -0.889 0.954 sum -13.064 12.574 -13.415 22.555 Atomic orbital electron populations 1.28987 1.14602 1.13837 1.12102 1.12829 0.81244 0.79920 0.76606 1.30128 1.14813 1.23014 1.10436 1.93560 1.72579 1.63152 1.61552 1.70162 1.30463 1.56408 1.45079 1.16463 0.81207 0.75265 0.85023 1.91025 1.56109 1.51732 1.47567 1.20037 0.90994 1.16103 0.97855 1.23377 0.99526 1.00390 0.90498 1.73233 0.90327 1.22551 1.27428 1.46835 1.05925 1.36357 1.12363 1.20171 0.79848 0.97591 0.90086 1.21182 1.16656 0.96595 1.22900 0.91620 1.24870 0.95361 0.98839 0.94383 1.69910 1.21356 1.37493 1.24004 0.86335 0.78965 0.83351 0.77996 1.20204 1.20810 1.19570 1.20860 0.93265 1.00821 0.88241 1.18098 0.90920 0.99493 0.93134 1.21199 0.92907 0.97595 0.99381 1.20667 0.97552 1.01701 0.94557 1.21351 0.98388 0.99378 0.94587 1.20712 0.93895 1.00619 0.99611 1.21076 0.96712 0.96554 0.92509 0.83653 0.84633 0.83306 0.83653 0.86181 0.85210 0.80318 0.92188 0.91790 0.92202 0.86058 0.86329 0.86736 0.86501 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.54 -1.03 10.89 101.05 1.10 0.07 16 2 S 2.30 20.12 4.52 -107.50 -0.49 19.63 16 3 C -0.63 -3.97 10.55 101.05 1.07 -2.90 16 4 O -0.92 -13.50 17.27 -52.02 -0.90 -14.40 16 5 N -1.11 -15.34 9.99 29.54 0.30 -15.04 16 6 C 0.63 11.86 7.31 -13.66 -0.10 11.76 16 7 O -0.58 -11.67 11.39 -12.15 -0.14 -11.81 16 8 C -0.23 -4.94 6.30 -103.72 -0.65 -5.59 16 9 C 0.04 0.76 11.83 -17.13 -0.20 0.56 16 10 N -0.30 -7.13 11.86 30.72 0.36 -6.77 16 11 N -0.23 -5.68 3.34 -57.42 -0.19 -5.87 16 12 C 0.24 6.26 5.87 -5.20 -0.03 6.22 16 13 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 14 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 15 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 16 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 17 Si 0.91 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.10 2.34 6.60 -80.75 -0.53 1.81 16 22 C -0.01 -0.32 5.39 -104.63 -0.56 -0.89 16 23 C -0.09 -1.85 8.53 -39.17 -0.33 -2.19 16 24 C -0.13 -2.22 9.99 -39.96 -0.40 -2.62 16 25 C -0.12 -1.95 10.07 -39.09 -0.39 -2.35 16 26 C -0.13 -2.31 9.99 -39.95 -0.40 -2.71 16 27 C -0.05 -1.01 7.75 -39.17 -0.30 -1.32 16 28 H 0.15 -0.07 8.14 -51.92 -0.42 -0.49 16 29 H 0.14 -0.15 8.14 -51.93 -0.42 -0.57 16 30 H 0.15 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.15 1.44 7.06 -51.92 -0.37 1.07 16 32 H 0.12 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.18 2.92 8.06 -52.49 -0.42 2.50 16 35 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.06 1.66 5.12 -51.93 -0.27 1.39 16 37 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.12 2.42 6.60 -52.48 -0.35 2.07 16 39 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 41 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.13 2.68 6.90 -52.49 -0.36 2.32 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -40.18 371.30 -7.02 -47.21 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.11 Total: 3.01 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -2.17 Total: -13.81 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 1.20 Total: -52.18 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -1.04 Total: -26.21 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 20.12 SS G_CDS: -0.49 Total: 19.63 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -40.18 -7.02 -47.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913642058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.889 kcal (2) G-P(sol) polarization free energy of solvation -40.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds