Wall clock time and date at job start Wed Apr 1 2020 04:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81399 * 107.16752 * 2 1 4 4 O 1.42104 * 113.54129 * 233.80290 * 2 1 3 5 5 N 1.49352 * 107.52361 * 115.33903 * 2 1 3 6 6 C 1.31700 * 119.99985 * 179.97438 * 5 2 1 7 7 O 1.22303 * 119.99957 * 0.02562 * 6 5 2 8 8 C 1.47894 * 120.00327 * 179.97438 * 6 5 2 9 9 C 1.39911 * 127.60765 * 359.97438 * 8 6 5 10 10 N 1.31359 * 107.98985 * 179.97438 * 9 8 6 11 11 N 1.28320 * 111.78902 * 359.97438 * 10 9 8 12 12 C 1.46491 * 125.09418 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46957 * 90.02537 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.37017 * 109.81789 * 0.26777 * 11 10 9 22 22 C 1.46200 * 127.18854 * 179.71738 * 21 11 10 23 23 C 1.40972 * 120.23775 * 314.71605 * 22 21 11 24 24 C 1.36523 * 119.74036 * 179.74120 * 23 22 21 25 25 C 1.38900 * 120.25131 * 0.54249 * 24 23 22 26 26 C 1.38910 * 120.49861 * 359.73338 * 25 24 23 27 27 C 1.36523 * 120.24870 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46933 * 304.65757 * 1 2 3 29 29 H 1.08997 * 109.47228 * 64.65807 * 1 2 3 30 30 H 1.09002 * 109.47131 * 184.66008 * 1 2 3 31 31 H 1.09000 * 109.47664 * 173.80541 * 3 2 1 32 32 H 1.09008 * 109.47167 * 293.80554 * 3 2 1 33 33 H 1.09003 * 109.47244 * 53.80099 * 3 2 1 34 34 H 1.08001 * 126.01136 * 0.03024 * 9 8 6 35 35 H 1.09004 * 109.47166 * 330.02803 * 12 11 10 36 36 H 1.08994 * 109.47507 * 210.02509 * 12 11 10 37 37 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 38 38 H 1.08004 * 120.12867 * 0.02562 * 23 22 21 39 39 H 1.08005 * 119.87535 * 180.29917 * 24 23 22 40 40 H 1.07998 * 119.75480 * 179.71818 * 25 24 23 41 41 H 1.07999 * 119.87617 * 180.02562 * 26 25 24 42 42 H 1.07997 * 120.13192 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.3494 1.7332 0.0000 4 8 2.3815 -0.7694 -1.0513 5 7 2.2636 -0.6095 1.2872 6 6 3.5495 -0.7318 1.5441 7 8 4.3754 -0.3457 0.7288 8 6 3.9949 -1.3348 2.8190 9 6 3.1951 -1.8247 3.8571 10 7 3.9883 -2.2733 4.8032 11 7 5.2257 -2.1300 4.4951 12 6 6.3553 -2.5298 5.3379 13 6 6.7408 -3.9515 5.0198 14 1 6.1988 -4.5021 4.2651 15 6 7.7894 -4.5475 5.6880 16 7 8.4495 -3.8769 6.6068 17 14 8.2721 -6.3071 5.2883 18 1 9.2877 -6.3079 4.2048 19 1 8.8401 -6.9519 6.4995 20 1 7.0725 -7.0606 4.8428 21 6 5.3323 -1.5410 3.2626 22 6 6.5623 -1.1980 2.5505 23 6 7.6210 -0.5605 3.2286 24 6 8.7671 -0.2497 2.5550 25 6 8.8878 -0.5490 1.2040 26 6 7.8487 -1.1719 0.5244 27 6 6.6959 -1.4972 1.1794 28 1 -0.3633 0.5844 0.8453 29 1 -0.3633 0.4398 -0.9287 30 1 -0.3633 -1.0243 0.0835 31 1 3.4328 1.7789 0.1109 32 1 2.0603 2.2028 -0.9403 33 1 1.8767 2.2595 0.8293 34 1 2.1153 -1.8334 3.8769 35 1 6.0694 -2.4570 6.3872 36 1 7.2028 -1.8719 5.1457 37 1 9.1870 -4.2963 7.0771 38 1 7.5277 -0.3231 4.2781 39 1 9.5815 0.2344 3.0736 40 1 9.7962 -0.2954 0.6779 41 1 7.9534 -1.4004 -0.5259 42 1 5.8894 -1.9818 0.6493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913642058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:44 Heat of formation + Delta-G solvation = 50.917847 kcal Electronic energy + Delta-G solvation = -28260.422724 eV Core-core repulsion = 24334.870590 eV Total energy + Delta-G solvation = -3925.552135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.08682 -40.24045 -39.67840 -37.35460 -35.80496 -34.29684 -33.59778 -33.20413 -31.93476 -30.77899 -29.97588 -29.85462 -29.11093 -25.88297 -24.78125 -23.60667 -23.29177 -21.59850 -20.59370 -19.14396 -18.92590 -18.43892 -17.76968 -17.17575 -17.05020 -16.93976 -16.63830 -16.39936 -15.95255 -15.58942 -15.22664 -15.07966 -14.90441 -14.56730 -14.34379 -14.25615 -14.00458 -13.94085 -13.89116 -13.79298 -13.52362 -13.47371 -13.09487 -13.00964 -12.75498 -12.39296 -12.21848 -12.05098 -11.94639 -11.82269 -11.68969 -10.95215 -10.78334 -10.76295 -10.58052 -10.35204 -9.85582 -9.84357 -9.03418 -8.39947 -6.55070 -1.42930 -0.09732 0.61294 0.85267 1.32481 1.34474 1.40310 1.48736 1.65459 1.87931 2.12705 2.31661 2.53773 2.92034 2.96374 3.23383 3.62977 3.84638 3.97140 4.03327 4.05618 4.08934 4.10604 4.22319 4.25451 4.32242 4.41110 4.55858 4.72470 4.76734 4.80918 4.90467 4.96388 4.97006 5.02146 5.18367 5.44284 5.53531 5.54820 5.58238 5.64708 5.71009 5.75449 6.02108 6.11582 6.50322 7.13961 7.16514 7.39056 8.68640 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013262 B = 0.003617 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.712709 B = 7739.729729 C = 8817.747059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.486 4.486 2 S 2.265 3.735 3 C -0.608 4.608 4 O -0.996 6.996 5 N -1.129 6.129 6 C 0.622 3.378 7 O -0.608 6.608 8 C -0.247 4.247 9 C 0.050 3.950 10 N -0.340 5.340 11 N -0.255 5.255 12 C 0.256 3.744 13 C -0.557 4.557 14 H 0.044 0.956 15 C 0.030 3.970 16 N -0.911 5.911 17 Si 0.968 3.032 18 H -0.268 1.268 19 H -0.266 1.266 20 H -0.276 1.276 21 C 0.082 3.918 22 C -0.045 4.045 23 C -0.111 4.111 24 C -0.127 4.127 25 C -0.105 4.105 26 C -0.132 4.132 27 C -0.066 4.066 28 H 0.185 0.815 29 H 0.183 0.817 30 H 0.156 0.844 31 H 0.106 0.894 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.217 0.783 35 H 0.038 0.962 36 H 0.061 0.939 37 H 0.276 0.724 38 H 0.111 0.889 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.145 0.855 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.648 15.220 -15.202 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.468 3.532 3 C -0.764 4.764 4 O -0.982 6.982 5 N -1.034 6.034 6 C 0.410 3.590 7 O -0.493 6.493 8 C -0.262 4.262 9 C -0.125 4.125 10 N -0.170 5.170 11 N -0.037 5.037 12 C 0.138 3.862 13 C -0.595 4.595 14 H 0.062 0.938 15 C -0.172 4.172 16 N -0.549 5.549 17 Si 0.792 3.208 18 H -0.194 1.194 19 H -0.190 1.190 20 H -0.201 1.201 21 C -0.050 4.050 22 C -0.047 4.047 23 C -0.130 4.130 24 C -0.145 4.145 25 C -0.123 4.123 26 C -0.150 4.150 27 C -0.085 4.085 28 H 0.202 0.798 29 H 0.201 0.799 30 H 0.174 0.826 31 H 0.124 0.876 32 H 0.179 0.821 33 H 0.183 0.817 34 H 0.234 0.766 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.129 0.871 39 H 0.167 0.833 40 H 0.178 0.822 41 H 0.163 0.837 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.984 14.113 -14.481 25.167 hybrid contribution 0.631 -0.292 -0.422 0.813 sum -14.353 13.821 -14.902 24.882 Atomic orbital electron populations 1.28928 1.03680 1.15715 1.16356 1.13504 0.85678 0.80593 0.73409 1.29838 1.12634 1.19714 1.14253 1.93515 1.77110 1.65772 1.61842 1.69706 1.27834 1.58828 1.47021 1.16371 0.83176 0.75352 0.84076 1.90986 1.57218 1.52828 1.48271 1.20659 0.90508 1.15545 0.99534 1.23946 1.00787 0.98542 0.89252 1.73148 0.90410 1.24309 1.29113 1.46555 1.05782 1.38231 1.13101 1.19727 0.80541 0.96691 0.89208 1.21265 1.17409 0.97719 1.23081 0.93815 1.25644 0.94903 1.02728 0.93958 1.69978 1.21562 1.39070 1.24274 0.85402 0.78471 0.78456 0.78496 1.19350 1.19005 1.20063 1.21408 0.95014 1.00696 0.87892 1.18306 0.91330 1.01230 0.93844 1.21280 0.93898 0.98597 0.99188 1.21075 0.97127 1.00918 0.95330 1.21821 0.99242 0.97132 0.94082 1.21082 0.93046 0.99875 1.00960 1.21038 0.97563 0.97706 0.92238 0.79758 0.79942 0.82627 0.87554 0.82105 0.81711 0.76645 0.94395 0.92157 0.91512 0.87147 0.83275 0.82232 0.83742 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 0.93 10.89 113.37 1.23 2.17 16 2 S 2.27 36.40 4.52 -56.49 -0.26 36.14 16 3 C -0.61 -6.14 10.55 113.37 1.20 -4.95 16 4 O -1.00 -30.10 17.27 -132.93 -2.30 -32.40 16 5 N -1.13 -31.28 9.99 -180.08 -1.80 -33.08 16 6 C 0.62 24.72 7.31 87.27 0.64 25.36 16 7 O -0.61 -26.18 11.39 9.74 0.11 -26.07 16 8 C -0.25 -11.13 6.30 -19.28 -0.12 -11.25 16 9 C 0.05 2.14 11.83 85.17 1.01 3.14 16 10 N -0.34 -16.92 11.86 -56.72 -0.67 -17.60 16 11 N -0.25 -13.42 3.34 -335.57 -1.12 -14.54 16 12 C 0.26 14.39 5.87 85.64 0.50 14.89 16 13 C -0.56 -33.33 9.39 25.60 0.24 -33.09 16 14 H 0.04 2.74 7.81 -2.91 -0.02 2.72 16 15 C 0.03 1.69 5.46 84.66 0.46 2.15 16 16 N -0.91 -52.80 13.29 21.45 0.28 -52.52 16 17 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 C 0.08 4.10 6.60 41.44 0.27 4.38 16 22 C -0.05 -2.12 5.39 -19.87 -0.11 -2.23 16 23 C -0.11 -4.70 8.53 22.54 0.19 -4.50 16 24 C -0.13 -4.38 9.99 22.03 0.22 -4.16 16 25 C -0.10 -3.26 10.07 22.59 0.23 -3.03 16 26 C -0.13 -4.66 9.99 22.03 0.22 -4.44 16 27 C -0.07 -2.88 7.75 22.54 0.17 -2.71 16 28 H 0.18 -1.55 8.14 -2.39 -0.02 -1.57 16 29 H 0.18 -1.79 8.14 -2.39 -0.02 -1.81 16 30 H 0.16 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.11 2.12 7.06 -2.39 -0.02 2.11 16 32 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.22 7.07 8.06 -2.91 -0.02 7.04 16 35 H 0.04 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.06 3.38 5.12 -2.39 -0.01 3.36 16 37 H 0.28 14.82 8.31 -92.70 -0.77 14.05 16 38 H 0.11 4.78 6.60 -2.91 -0.02 4.76 16 39 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 40 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 42 H 0.10 4.86 6.90 -2.91 -0.02 4.84 16 Total: -1.00 -99.23 371.30 3.69 -95.54 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.05 Total: 15.38 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 6.36 Total: -18.26 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -3.31 Total: -117.73 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -2.18 Total: -58.47 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: 36.40 SS G_CDS: -0.26 Total: 36.14 kcal Total: -99.23 3.69 -95.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913642058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.458 kcal (2) G-P(sol) polarization free energy of solvation -99.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds