Wall clock time and date at job start Wed Apr 1 2020 04:36:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81394 * 1
3 3 C 1.81399 * 107.16752 * 2 1
4 4 O 1.42104 * 113.54129 * 233.80290 * 2 1 3
5 5 N 1.49352 * 107.52361 * 115.33903 * 2 1 3
6 6 C 1.31700 * 119.99985 * 179.97438 * 5 2 1
7 7 O 1.22303 * 119.99957 * 0.02562 * 6 5 2
8 8 C 1.47894 * 120.00327 * 179.97438 * 6 5 2
9 9 C 1.39911 * 127.60765 * 359.97438 * 8 6 5
10 10 N 1.31359 * 107.98985 * 179.97438 * 9 8 6
11 11 N 1.28320 * 111.78902 * 359.97438 * 10 9 8
12 12 C 1.46491 * 125.09418 * 179.97438 * 11 10 9
13 13 C 1.50702 * 109.46957 * 90.02537 * 12 11 10
14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11
15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11
16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12
17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12
18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13
19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13
20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13
21 21 C 1.37017 * 109.81789 * 0.26777 * 11 10 9
22 22 C 1.46200 * 127.18854 * 179.71738 * 21 11 10
23 23 C 1.40972 * 120.23775 * 314.71605 * 22 21 11
24 24 C 1.36523 * 119.74036 * 179.74120 * 23 22 21
25 25 C 1.38900 * 120.25131 * 0.54249 * 24 23 22
26 26 C 1.38910 * 120.49861 * 359.73338 * 25 24 23
27 27 C 1.36523 * 120.24870 * 359.97438 * 26 25 24
28 28 H 1.09001 * 109.46933 * 304.65757 * 1 2 3
29 29 H 1.08997 * 109.47228 * 64.65807 * 1 2 3
30 30 H 1.09002 * 109.47131 * 184.66008 * 1 2 3
31 31 H 1.09000 * 109.47664 * 173.80541 * 3 2 1
32 32 H 1.09008 * 109.47167 * 293.80554 * 3 2 1
33 33 H 1.09003 * 109.47244 * 53.80099 * 3 2 1
34 34 H 1.08001 * 126.01136 * 0.03024 * 9 8 6
35 35 H 1.09004 * 109.47166 * 330.02803 * 12 11 10
36 36 H 1.08994 * 109.47507 * 210.02509 * 12 11 10
37 37 H 0.97005 * 119.99651 * 179.97438 * 16 15 13
38 38 H 1.08004 * 120.12867 * 0.02562 * 23 22 21
39 39 H 1.08005 * 119.87535 * 180.29917 * 24 23 22
40 40 H 1.07998 * 119.75480 * 179.71818 * 25 24 23
41 41 H 1.07999 * 119.87617 * 180.02562 * 26 25 24
42 42 H 1.07997 * 120.13192 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 6 2.3494 1.7332 0.0000
4 8 2.3815 -0.7694 -1.0513
5 7 2.2636 -0.6095 1.2872
6 6 3.5495 -0.7318 1.5441
7 8 4.3754 -0.3457 0.7288
8 6 3.9949 -1.3348 2.8190
9 6 3.1951 -1.8247 3.8571
10 7 3.9883 -2.2733 4.8032
11 7 5.2257 -2.1300 4.4951
12 6 6.3553 -2.5298 5.3379
13 6 6.7408 -3.9515 5.0198
14 1 6.1988 -4.5021 4.2651
15 6 7.7894 -4.5475 5.6880
16 7 8.4495 -3.8769 6.6068
17 14 8.2721 -6.3071 5.2883
18 1 9.2877 -6.3079 4.2048
19 1 8.8401 -6.9519 6.4995
20 1 7.0725 -7.0606 4.8428
21 6 5.3323 -1.5410 3.2626
22 6 6.5623 -1.1980 2.5505
23 6 7.6210 -0.5605 3.2286
24 6 8.7671 -0.2497 2.5550
25 6 8.8878 -0.5490 1.2040
26 6 7.8487 -1.1719 0.5244
27 6 6.6959 -1.4972 1.1794
28 1 -0.3633 0.5844 0.8453
29 1 -0.3633 0.4398 -0.9287
30 1 -0.3633 -1.0243 0.0835
31 1 3.4328 1.7789 0.1109
32 1 2.0603 2.2028 -0.9403
33 1 1.8767 2.2595 0.8293
34 1 2.1153 -1.8334 3.8769
35 1 6.0694 -2.4570 6.3872
36 1 7.2028 -1.8719 5.1457
37 1 9.1870 -4.2963 7.0771
38 1 7.5277 -0.3231 4.2781
39 1 9.5815 0.2344 3.0736
40 1 9.7962 -0.2954 0.6779
41 1 7.9534 -1.4004 -0.5259
42 1 5.8894 -1.9818 0.6493
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000913642058.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:36:44
Heat of formation + Delta-G solvation = 50.917847 kcal
Electronic energy + Delta-G solvation = -28260.422724 eV
Core-core repulsion = 24334.870590 eV
Total energy + Delta-G solvation = -3925.552135 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-43.08682 -40.24045 -39.67840 -37.35460 -35.80496 -34.29684 -33.59778 -33.20413
-31.93476 -30.77899 -29.97588 -29.85462 -29.11093 -25.88297 -24.78125 -23.60667
-23.29177 -21.59850 -20.59370 -19.14396 -18.92590 -18.43892 -17.76968 -17.17575
-17.05020 -16.93976 -16.63830 -16.39936 -15.95255 -15.58942 -15.22664 -15.07966
-14.90441 -14.56730 -14.34379 -14.25615 -14.00458 -13.94085 -13.89116 -13.79298
-13.52362 -13.47371 -13.09487 -13.00964 -12.75498 -12.39296 -12.21848 -12.05098
-11.94639 -11.82269 -11.68969 -10.95215 -10.78334 -10.76295 -10.58052 -10.35204
-9.85582 -9.84357 -9.03418 -8.39947 -6.55070 -1.42930 -0.09732 0.61294
0.85267 1.32481 1.34474 1.40310 1.48736 1.65459 1.87931 2.12705
2.31661 2.53773 2.92034 2.96374 3.23383 3.62977 3.84638 3.97140
4.03327 4.05618 4.08934 4.10604 4.22319 4.25451 4.32242 4.41110
4.55858 4.72470 4.76734 4.80918 4.90467 4.96388 4.97006 5.02146
5.18367 5.44284 5.53531 5.54820 5.58238 5.64708 5.71009 5.75449
6.02108 6.11582 6.50322 7.13961 7.16514 7.39056 8.68640
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.013262 B = 0.003617 C = 0.003175
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2110.712709 B = 7739.729729 C = 8817.747059
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.486 4.486
2 S 2.265 3.735
3 C -0.608 4.608
4 O -0.996 6.996
5 N -1.129 6.129
6 C 0.622 3.378
7 O -0.608 6.608
8 C -0.247 4.247
9 C 0.050 3.950
10 N -0.340 5.340
11 N -0.255 5.255
12 C 0.256 3.744
13 C -0.557 4.557
14 H 0.044 0.956
15 C 0.030 3.970
16 N -0.911 5.911
17 Si 0.968 3.032
18 H -0.268 1.268
19 H -0.266 1.266
20 H -0.276 1.276
21 C 0.082 3.918
22 C -0.045 4.045
23 C -0.111 4.111
24 C -0.127 4.127
25 C -0.105 4.105
26 C -0.132 4.132
27 C -0.066 4.066
28 H 0.185 0.815
29 H 0.183 0.817
30 H 0.156 0.844
31 H 0.106 0.894
32 H 0.161 0.839
33 H 0.165 0.835
34 H 0.217 0.783
35 H 0.038 0.962
36 H 0.061 0.939
37 H 0.276 0.724
38 H 0.111 0.889
39 H 0.150 0.850
40 H 0.160 0.840
41 H 0.145 0.855
42 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.648 15.220 -15.202 26.602
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.647 4.647
2 S 2.468 3.532
3 C -0.764 4.764
4 O -0.982 6.982
5 N -1.034 6.034
6 C 0.410 3.590
7 O -0.493 6.493
8 C -0.262 4.262
9 C -0.125 4.125
10 N -0.170 5.170
11 N -0.037 5.037
12 C 0.138 3.862
13 C -0.595 4.595
14 H 0.062 0.938
15 C -0.172 4.172
16 N -0.549 5.549
17 Si 0.792 3.208
18 H -0.194 1.194
19 H -0.190 1.190
20 H -0.201 1.201
21 C -0.050 4.050
22 C -0.047 4.047
23 C -0.130 4.130
24 C -0.145 4.145
25 C -0.123 4.123
26 C -0.150 4.150
27 C -0.085 4.085
28 H 0.202 0.798
29 H 0.201 0.799
30 H 0.174 0.826
31 H 0.124 0.876
32 H 0.179 0.821
33 H 0.183 0.817
34 H 0.234 0.766
35 H 0.056 0.944
36 H 0.078 0.922
37 H 0.085 0.915
38 H 0.129 0.871
39 H 0.167 0.833
40 H 0.178 0.822
41 H 0.163 0.837
42 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -14.984 14.113 -14.481 25.167
hybrid contribution 0.631 -0.292 -0.422 0.813
sum -14.353 13.821 -14.902 24.882
Atomic orbital electron populations
1.28928 1.03680 1.15715 1.16356 1.13504 0.85678 0.80593 0.73409
1.29838 1.12634 1.19714 1.14253 1.93515 1.77110 1.65772 1.61842
1.69706 1.27834 1.58828 1.47021 1.16371 0.83176 0.75352 0.84076
1.90986 1.57218 1.52828 1.48271 1.20659 0.90508 1.15545 0.99534
1.23946 1.00787 0.98542 0.89252 1.73148 0.90410 1.24309 1.29113
1.46555 1.05782 1.38231 1.13101 1.19727 0.80541 0.96691 0.89208
1.21265 1.17409 0.97719 1.23081 0.93815 1.25644 0.94903 1.02728
0.93958 1.69978 1.21562 1.39070 1.24274 0.85402 0.78471 0.78456
0.78496 1.19350 1.19005 1.20063 1.21408 0.95014 1.00696 0.87892
1.18306 0.91330 1.01230 0.93844 1.21280 0.93898 0.98597 0.99188
1.21075 0.97127 1.00918 0.95330 1.21821 0.99242 0.97132 0.94082
1.21082 0.93046 0.99875 1.00960 1.21038 0.97563 0.97706 0.92238
0.79758 0.79942 0.82627 0.87554 0.82105 0.81711 0.76645 0.94395
0.92157 0.91512 0.87147 0.83275 0.82232 0.83742 0.87839
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.49 0.93 10.89 113.37 1.23 2.17 16
2 S 2.27 36.40 4.52 -56.49 -0.26 36.14 16
3 C -0.61 -6.14 10.55 113.37 1.20 -4.95 16
4 O -1.00 -30.10 17.27 -132.93 -2.30 -32.40 16
5 N -1.13 -31.28 9.99 -180.08 -1.80 -33.08 16
6 C 0.62 24.72 7.31 87.27 0.64 25.36 16
7 O -0.61 -26.18 11.39 9.74 0.11 -26.07 16
8 C -0.25 -11.13 6.30 -19.28 -0.12 -11.25 16
9 C 0.05 2.14 11.83 85.17 1.01 3.14 16
10 N -0.34 -16.92 11.86 -56.72 -0.67 -17.60 16
11 N -0.25 -13.42 3.34 -335.57 -1.12 -14.54 16
12 C 0.26 14.39 5.87 85.64 0.50 14.89 16
13 C -0.56 -33.33 9.39 25.60 0.24 -33.09 16
14 H 0.04 2.74 7.81 -2.91 -0.02 2.72 16
15 C 0.03 1.69 5.46 84.66 0.46 2.15 16
16 N -0.91 -52.80 13.29 21.45 0.28 -52.52 16
17 Si 0.97 45.37 29.54 68.60 2.03 47.40 16
18 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16
19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16
21 C 0.08 4.10 6.60 41.44 0.27 4.38 16
22 C -0.05 -2.12 5.39 -19.87 -0.11 -2.23 16
23 C -0.11 -4.70 8.53 22.54 0.19 -4.50 16
24 C -0.13 -4.38 9.99 22.03 0.22 -4.16 16
25 C -0.10 -3.26 10.07 22.59 0.23 -3.03 16
26 C -0.13 -4.66 9.99 22.03 0.22 -4.44 16
27 C -0.07 -2.88 7.75 22.54 0.17 -2.71 16
28 H 0.18 -1.55 8.14 -2.39 -0.02 -1.57 16
29 H 0.18 -1.79 8.14 -2.39 -0.02 -1.81 16
30 H 0.16 -0.18 8.14 -2.39 -0.02 -0.20 16
31 H 0.11 2.12 7.06 -2.39 -0.02 2.11 16
32 H 0.16 0.32 8.14 -2.39 -0.02 0.30 16
33 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16
34 H 0.22 7.07 8.06 -2.91 -0.02 7.04 16
35 H 0.04 2.24 8.14 -2.38 -0.02 2.22 16
36 H 0.06 3.38 5.12 -2.39 -0.01 3.36 16
37 H 0.28 14.82 8.31 -92.70 -0.77 14.05 16
38 H 0.11 4.78 6.60 -2.91 -0.02 4.76 16
39 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16
40 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16
41 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16
42 H 0.10 4.86 6.90 -2.91 -0.02 4.84 16
Total: -1.00 -99.23 371.30 3.69 -95.54
By element:
Atomic # 1 Polarization: 14.34 SS G_CDS: 1.05 Total: 15.38 kcal
Atomic # 6 Polarization: -24.62 SS G_CDS: 6.36 Total: -18.26 kcal
Atomic # 7 Polarization: -114.42 SS G_CDS: -3.31 Total: -117.73 kcal
Atomic # 8 Polarization: -56.29 SS G_CDS: -2.18 Total: -58.47 kcal
Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal
Atomic # 16 Polarization: 36.40 SS G_CDS: -0.26 Total: 36.14 kcal
Total: -99.23 3.69 -95.54 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000913642058.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.458 kcal
(2) G-P(sol) polarization free energy of solvation -99.231 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.228 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.918 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds