Wall clock time and date at job start Wed Apr 1 2020 04:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35897 * 117.00001 * 2 1 4 4 C 1.38751 * 120.05689 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94480 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05327 * 0.02562 * 5 4 3 7 7 C 1.38237 * 120.11258 * 359.95851 * 6 5 4 8 8 C 1.50701 * 119.97006 * 180.02562 * 7 6 5 9 9 H 1.09007 * 109.46646 * 204.99503 * 8 7 6 10 10 O 1.42899 * 109.47083 * 324.99581 * 8 7 6 11 11 C 1.42901 * 113.99912 * 270.00101 * 10 8 7 12 12 C 1.50693 * 109.47517 * 85.00074 * 8 7 6 13 13 O 1.21281 * 120.00095 * 244.99904 * 12 8 7 14 14 N 1.34780 * 120.00182 * 64.99565 * 12 8 7 15 15 C 1.46500 * 119.99910 * 180.02562 * 14 12 8 16 16 H 1.09002 * 109.47129 * 324.99754 * 15 14 12 17 17 C 1.50699 * 109.46939 * 205.00060 * 15 14 12 18 18 H 1.08003 * 120.00271 * 359.97438 * 17 15 14 19 19 C 1.37877 * 120.00384 * 179.97438 * 17 15 14 20 20 N 1.31515 * 119.99644 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00636 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46664 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47482 * 119.99851 * 21 19 17 24 24 H 1.48497 * 109.47236 * 240.00229 * 21 19 17 25 25 C 1.52997 * 109.47473 * 85.00011 * 15 14 12 26 26 F 1.39905 * 109.47157 * 59.99740 * 25 15 14 27 27 F 1.39900 * 109.47010 * 300.00131 * 25 15 14 28 28 F 1.39897 * 109.47422 * 179.97438 * 25 15 14 29 29 C 1.38166 * 120.05649 * 0.27141 * 7 6 5 30 30 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47138 * 300.00183 * 1 2 3 32 32 H 1.09000 * 109.46440 * 60.00159 * 1 2 3 33 33 H 1.08003 * 120.02823 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.97313 * 180.02562 * 5 4 3 35 35 H 1.07995 * 119.93968 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47289 * 60.00153 * 11 10 8 37 37 H 1.09002 * 109.46712 * 179.97438 * 11 10 8 38 38 H 1.08995 * 109.47252 * 300.00029 * 11 10 8 39 39 H 0.96994 * 120.00115 * 0.02562 * 14 12 8 40 40 H 0.97006 * 120.00331 * 179.97438 * 20 19 17 41 41 H 1.08005 * 120.03182 * 179.74016 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3021 3.6757 -0.0016 7 6 4.0561 2.5170 -0.0007 8 6 5.5609 2.5981 -0.0007 9 1 5.9738 1.6872 -0.4343 10 8 5.9772 3.7251 -0.7744 11 6 6.1868 3.4350 -2.1578 12 6 6.0559 2.7498 1.4145 13 8 6.6226 3.7672 1.7529 14 7 5.8687 1.7548 2.3042 15 6 6.3494 1.9026 3.6802 16 1 7.2803 2.4695 3.6809 17 6 6.5906 0.5400 4.2770 18 1 6.4041 -0.3473 3.6902 19 6 7.0495 0.4260 5.5721 20 7 7.2771 1.5064 6.2865 21 14 7.3493 -1.2630 6.3117 22 1 7.0198 -2.3078 5.3092 23 1 8.7762 -1.3854 6.7042 24 1 6.4895 -1.4385 7.5097 25 6 5.2999 2.6444 4.5103 26 9 4.1050 1.9166 4.5093 27 9 5.0759 3.9093 3.9562 28 9 5.7587 2.7849 5.8244 29 6 3.4312 1.2848 -0.0050 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 0.2129 2.3203 -0.0005 34 1 1.3341 4.5114 -0.0011 35 1 3.7923 4.6379 -0.0024 36 1 5.2589 3.0686 -2.5969 37 1 6.5003 4.3415 -2.6757 38 1 6.9607 2.6738 -2.2562 39 1 5.4157 0.9410 2.0335 40 1 7.5996 1.4263 7.1979 41 1 4.0207 0.3798 -0.0086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928800586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:50 Heat of formation + Delta-G solvation = -220.943721 kcal Electronic energy + Delta-G solvation = -32410.049741 eV Core-core repulsion = 27455.806441 eV Total energy + Delta-G solvation = -4954.243299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.30742 -45.95743 -45.57964 -40.41939 -39.34078 -37.68242 -36.85369 -34.61413 -32.72980 -31.85809 -30.43430 -28.76391 -27.53785 -27.28892 -25.51400 -24.52648 -22.63285 -22.02977 -21.14916 -19.87282 -18.22210 -17.63759 -16.98451 -16.69930 -16.60244 -16.53349 -16.13692 -15.81776 -15.77790 -15.55306 -15.33750 -14.89172 -14.54887 -14.05215 -13.81660 -13.62096 -13.38772 -13.08146 -12.87902 -12.74383 -12.59000 -12.38792 -12.34121 -12.23489 -12.00417 -11.94407 -11.78961 -11.67644 -11.29496 -11.18447 -11.15812 -10.96142 -10.86299 -10.76638 -10.40007 -9.95781 -9.64597 -9.36170 -8.73201 -8.72277 -8.26884 -8.19345 -6.23219 -4.47034 1.20118 1.46701 2.99685 3.18251 3.21900 3.26144 3.28199 3.34686 3.70288 4.18455 4.35495 4.57119 4.63650 4.72640 4.93582 4.94661 4.98010 5.00699 5.08512 5.21295 5.29422 5.35373 5.37040 5.41895 5.46486 5.55683 5.64046 5.86219 5.90094 5.92873 6.23118 6.24269 6.42529 6.53206 6.68487 6.90888 7.03700 7.19521 7.33036 7.47330 7.63300 8.28873 8.50453 8.84831 9.20608 10.68555 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010774 B = 0.004358 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.161331 B = 6424.005066 C = 7404.857580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.126 3.874 4 C -0.203 4.203 5 C -0.082 4.082 6 C -0.120 4.120 7 C -0.073 4.073 8 C 0.115 3.885 9 H 0.095 0.905 10 O -0.349 6.349 11 C 0.028 3.972 12 C 0.513 3.487 13 O -0.510 6.510 14 N -0.706 5.706 15 C 0.246 3.754 16 H 0.086 0.914 17 C -0.551 4.551 18 H 0.078 0.922 19 C 0.065 3.935 20 N -0.839 5.839 21 Si 0.915 3.085 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.417 3.583 26 F -0.208 7.208 27 F -0.217 7.217 28 F -0.137 7.137 29 C -0.139 4.139 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.042 0.958 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.398 0.602 40 H 0.268 0.732 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.254 -1.382 -14.783 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.081 3.919 4 C -0.222 4.222 5 C -0.100 4.100 6 C -0.138 4.138 7 C -0.074 4.074 8 C 0.053 3.947 9 H 0.112 0.888 10 O -0.266 6.266 11 C -0.069 4.069 12 C 0.296 3.704 13 O -0.385 6.385 14 N -0.357 5.357 15 C 0.141 3.859 16 H 0.104 0.896 17 C -0.588 4.588 18 H 0.096 0.904 19 C -0.144 4.144 20 N -0.472 5.472 21 Si 0.742 3.258 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.206 1.206 25 C 0.361 3.639 26 F -0.190 7.190 27 F -0.199 7.199 28 F -0.118 7.118 29 C -0.158 4.158 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.232 0.768 40 H 0.078 0.922 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.661 -0.537 -14.234 17.212 hybrid contribution -0.743 -1.166 0.390 1.436 sum -10.404 -1.702 -13.845 17.402 Atomic orbital electron populations 1.23039 0.78542 1.03844 1.01261 1.86073 1.21243 1.26831 1.88825 1.18841 0.92048 0.84172 0.96818 1.21247 0.99908 0.92485 1.08552 1.20934 0.94462 0.97007 0.97636 1.20948 0.93397 0.98724 1.00751 1.19833 0.94632 0.93113 0.99797 1.20771 0.90338 0.91318 0.92246 0.88754 1.88063 1.87714 1.31486 1.19300 1.22890 0.99755 1.02095 0.82180 1.19971 0.80158 0.84257 0.86003 1.90724 1.40915 1.28025 1.78802 1.45961 1.59616 1.18766 1.11330 1.19751 0.91510 0.98626 0.75990 0.89620 1.20904 1.48547 0.90024 0.99318 0.90361 1.25082 0.94582 0.98167 0.96555 1.70415 1.39298 1.27345 1.10175 0.86158 0.78034 0.82516 0.79132 1.19371 1.20547 1.20576 1.23092 0.82426 0.76235 0.82158 1.92994 1.50954 1.78240 1.96853 1.93075 1.95567 1.45167 1.86052 1.93401 1.87122 1.95321 1.35983 1.20193 0.91693 0.97734 1.06160 0.88307 0.92564 0.92859 0.85569 0.85634 0.84988 0.93895 0.89207 0.93742 0.76780 0.92163 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.94 10.50 -19.42 -0.20 -4.15 16 3 C 0.13 1.69 6.69 -39.22 -0.26 1.43 16 4 C -0.20 -2.47 9.04 -39.43 -0.36 -2.82 16 5 C -0.08 -1.04 10.04 -39.60 -0.40 -1.44 16 6 C -0.12 -1.76 9.35 -39.56 -0.37 -2.13 16 7 C -0.07 -1.08 4.91 -104.65 -0.51 -1.59 16 8 C 0.12 1.80 2.73 -29.04 -0.08 1.72 16 9 H 0.09 1.19 7.69 -51.93 -0.40 0.79 16 10 O -0.35 -5.47 9.03 -55.09 -0.50 -5.97 16 11 C 0.03 0.30 10.81 101.05 1.09 1.39 16 12 C 0.51 10.52 6.70 -10.99 -0.07 10.45 16 13 O -0.51 -12.55 15.08 -14.30 -0.22 -12.77 16 14 N -0.71 -14.76 4.94 -54.93 -0.27 -15.03 16 15 C 0.25 6.20 2.21 -69.08 -0.15 6.05 16 16 H 0.09 2.40 7.58 -51.93 -0.39 2.01 16 17 C -0.55 -14.09 8.46 -34.44 -0.29 -14.38 16 18 H 0.08 1.89 7.74 -52.48 -0.41 1.48 16 19 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 20 N -0.84 -23.11 9.51 55.43 0.53 -22.58 16 21 Si 0.92 20.12 29.54 -169.99 -5.02 15.10 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.42 10.94 2.81 37.16 0.10 11.04 16 26 F -0.21 -5.30 16.94 2.25 0.04 -5.26 16 27 F -0.22 -5.69 15.68 2.25 0.04 -5.65 16 28 F -0.14 -3.86 12.91 2.25 0.03 -3.83 16 29 C -0.14 -1.92 9.47 -39.43 -0.37 -2.29 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 32 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 33 H 0.13 1.20 6.30 -52.48 -0.33 0.87 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.13 2.01 7.62 -52.49 -0.40 1.61 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 39 H 0.40 7.30 8.39 -40.82 -0.34 6.96 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -32.67 361.24 -5.65 -38.32 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.74 Total: 6.12 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -0.77 Total: 10.24 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.26 Total: -37.61 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.92 Total: -22.88 kcal Atomic # 9 Polarization: -14.84 SS G_CDS: 0.10 Total: -14.74 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.67 -5.65 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.624 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds